Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005215

Physical Location & Seq

Genomic Coordinates Forward (+)

52480949 .. 52483438

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGACACCAGGAAGTTCATGCAACTGGTCGAGGAGAAAAAGAGGAGAGCTTTGGAGAAGAAAGAAGCACCTTTGAAATGGGAGCAGAAACTAGAAGCTGCTGCCAAGGCAAAAGCTGATGCTGAAGCCAAAGAGAGGAAATTGAAATCTTCGAAGCACAAGAGAAGGTCTGTCTCAGACTCCGATTCAGATAGCGACGCCAACGGCACTGATGGTAGGAGAAAATCAAGTAAAAGAGCTCACAAGAAGCACAAGAAAGACCCTCACTCGGACTCGAGTGACAACGAAAAGAAGAAGGAAAAGAGATCCAGGCGGAAGCCAAAGAGATATTCCTCAGTGTCAAGTGATGACAGCAGTGATGGATATGAGAGTGGCTATGAAGGAGATAAGAAGAGGAAGAAGCGAAGCCACAAAAGGCACAGGGGTCATGATTCTAGATCAGAATCTGGTGCTTCTGATTCTTCAAGTGATGACAAGGATGAGAGAGTCAAGAGAAGTCATGTGAAGTACCACAGGCGCCATAGGAGGGCAGATTCTGATCTTTCTGATTCTAGTGATGATGATCGGAGAAGAATCAGAAGAAGTCATGCAAAGCACCCTAAACACCACCGACAGTTGAAATCTGTTTCTTCTGATTCTTCTAGTTATGAGGATGGTGAGATTAGAAGGAAAAGTCGTGCAAAGCACCATAAATGTCATAGGCGACCAAATAGTGTTGATTCAAGGTCATCGGAGTCAGATTCCTATATGCTTGACAGAAGAAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATGAGGCAGGTAAACATTTGAAGGACAAGAAAAATGGCCACCACCATCATCATAGACATGGTCACAATCATTACTCAGGAGAGGAGAAAGATCACCATCATCAGGATTCAGTTAAGCCCCATGGAAAGCACATCAAAGACCACAGTAGAAATGGAACTGATGACATTAATGATGGTCCTGATGATCAGAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

331

Amino Acids

38.5

Weight (kDa)

9.93

Isoelectric Point (pI)

79.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10540 AT1G10540 AT1G60030
fragaria_vesca	FvH4_4g34940 FvH4_4g34940 FvH4_4g34940 FvH4_4g34940 FvH4_4g34940
malus_domestica	MD13G1087500.v1.1 MD16G1088000.v1.1
prunus_persica	Prupe.1G258700_v2.0.a1 Prupe.1G258700_v2.0.a1 Prupe.1G258700_v2.0.a1
pyrus_communis	pycom13g07540 pycom16g07540
rosa_chinensis	RchiOBHm_Chr4g0444391
rosa_laevigata	RLG00000005835
rosa_multiflora	Rmu_sc0002841.1_g000007 Rmu_sc0019696.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384920
rosa_rugosa	Rorug04G0352500 Rorug04G0352600 Rorug04G0352600 Rorug04G0352700 Rorug04G0352700 Rorug04G0352700
rosa_samantha	Rh4AG412800 Rh4BG424300
rosa_wichuraiana	Rw4G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	797
AccB1I	GGYRCC	1 cut(s)	516
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	198, 517
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	5 cut(s)	135, 268, 526, 802, 901
AgsI	TTSAA	6 cut(s)	76, 145, 465, 619, 723, 820
AjnI	CCWGG	2 cut(s)	8, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	4 cut(s)	50, 98, 116, 239
AluI	AGCT	4 cut(s)	50, 98, 116, 239
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	2 cut(s)	446, 536
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	835
ApeKI	GCWGC	2 cut(s)	98, 101
AseI	ATTAAT	1 cut(s)	966
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	974
AsuHPI	GGTGA	2 cut(s)	668, 884
AsuII	TTCGAA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	974
BalI	TGGCCA	1 cut(s)	837
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	85, 88
BccI	CCATC	6 cut(s)	206, 353, 647, 852, 903, 965
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	10, 310
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	4 cut(s)	92, 435, 552, 642
BfoI	RGCGCY	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	797
BglII	AGATCT	1 cut(s)	767
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme1390I	CCNGG	2 cut(s)	10, 310
Bme18I	GGWCC	1 cut(s)	974
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	974
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	2 cut(s)	10, 310
BmsI	GCATC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	152
BsaBI	GATNNNNATC	4 cut(s)	442, 537, 561, 894
BsaHI	GRCGYC	2 cut(s)	198, 517
BsaJI	CCNNGG	2 cut(s)	105, 919
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 268, 526, 802, 901
Bse1I	ACTGG	1 cut(s)	30
Bse8I	GATNNNNATC	4 cut(s)	442, 537, 561, 894
BseBI	CCWGG	2 cut(s)	10, 310
BseDI	CCNNGG	2 cut(s)	105, 919
BseGI	GGATG	2 cut(s)	484, 658
BseJI	GATNNNNATC	4 cut(s)	442, 537, 561, 894
BseLI	CCNNNNNNNGG	5 cut(s)	135, 268, 526, 802, 901
BseMII	CTCAG	3 cut(s)	189, 348, 888
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	3 cut(s)	47, 58, 896
BseXI	GCAGC	2 cut(s)	85, 88
BshFI	GGCC	1 cut(s)	837
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	274
BslI	CCNNNNNNNGG	5 cut(s)	135, 268, 526, 802, 901
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	837
BsoBI	CYCGRG	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	837
BspCNI	CTCAG	3 cut(s)	188, 347, 887
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	797
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	105, 919
BssMI	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
BssNI	GRCGYC	2 cut(s)	198, 517
BssT1I	CCWWGG	2 cut(s)	105, 919
Bst2UI	CCWGG	2 cut(s)	10, 310
Bst4CI	ACNGT	2 cut(s)	615, 944
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	2 cut(s)	198, 517
BstBI	TTCGAA	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	175, 334, 874
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	2 cut(s)	484, 658
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	7 cut(s)	308, 440, 541, 565, 770, 892, 985
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	2 cut(s)	10, 310
BstSCI	CCNGG	2 cut(s)	8, 308
BstV1I	GCAGC	2 cut(s)	85, 88
BstX2I	RGATCY	2 cut(s)	305, 767
BstYI	RGATCY	2 cut(s)	305, 767
BsuRI	GGCC	1 cut(s)	837
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	2 cut(s)	484, 658
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	3 cut(s)	207, 342, 361
BveI	ACCTGC	1 cut(s)	797
CaiI	CAGNNNCTG	2 cut(s)	446, 536
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	974
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	7 cut(s)	19, 428, 500, 587, 797, 857, 920
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	175, 334, 874
DinI	GGCGCC	1 cut(s)	518
DpnI	GATC	7 cut(s)	307, 439, 540, 564, 769, 891, 984
DpnII	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	105, 919
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	974
Eco53kI	GAGCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	8, 308
EcoT14I	CCWWGG	2 cut(s)	105, 919
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	518
EheI	GGCGCC	1 cut(s)	518
ErhI	CCWWGG	2 cut(s)	105, 919
FaeI	CATG	7 cut(s)	22, 431, 503, 590, 800, 860, 923
FalI	AAGNNNNNCTT	2 cut(s)	754, 786
FatI	CATG	7 cut(s)	18, 427, 499, 586, 796, 856, 919
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	2 cut(s)	491, 665
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	4 cut(s)	92, 435, 552, 642
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	2 cut(s)	99, 102
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	1 cut(s)	837
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	2 cut(s)	198, 517
Hin1II	CATG	7 cut(s)	22, 431, 503, 590, 800, 860, 923
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HphI	GGTGA	2 cut(s)	668, 884
Hpy166II	GTNNAC	1 cut(s)	812
Hpy188III	TCNNGA	6 cut(s)	428, 435, 490, 876, 902, 977
Hpy8I	GTNNAC	1 cut(s)	812
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	5 cut(s)	159, 289, 374, 660, 814
HpyCH4III	ACNGT	2 cut(s)	615, 944
HpyCH4V	TGCA	3 cut(s)	22, 590, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	175, 334, 874
Hsp92I	GRCGYC	2 cut(s)	198, 517
Hsp92II	CATG	7 cut(s)	22, 431, 503, 590, 800, 860, 923
HspAI	GCGC	1 cut(s)	517
KasI	GGCGCC	1 cut(s)	516
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	4 cut(s)	92, 435, 552, 642
MaeIII	GTNAC	2 cut(s)	278, 860
MalI	GATC	7 cut(s)	307, 439, 540, 564, 769, 891, 984
MboI	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
MflI	RGATCY	2 cut(s)	305, 767
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	837
Mly113I	GGCGCC	1 cut(s)	517
MlyI	GAGTC	4 cut(s)	173, 266, 495, 743
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	2 cut(s)	912, 966
MslI	CAYNNNNRTG	1 cut(s)	855
Msp20I	TGGCCA	1 cut(s)	837
MspR9I	CCNGG	2 cut(s)	10, 310
MvaI	CCWGG	2 cut(s)	10, 310
MwoI	GCNNNNNNNGC	1 cut(s)	107
NarI	GGCGCC	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
NlaIII	CATG	7 cut(s)	22, 431, 503, 590, 800, 860, 923
NlaIV	GGNNCC	1 cut(s)	518
NmuCI	GTSAC	2 cut(s)	278, 860
NspV	TTCGAA	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	274
PagI	TCATGA	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	858
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	4 cut(s)	173, 266, 494, 742
PluTI	GGCGCC	1 cut(s)	520
PpsI	GAGTC	4 cut(s)	173, 266, 494, 742
PshBI	ATTAAT	1 cut(s)	966
Psp124BI	GAGCTC	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	8, 308
PspGI	CCWGG	2 cut(s)	8, 308
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	974
PspXI	VCTCGAGB	1 cut(s)	274
PstNI	CAGNNNCTG	2 cut(s)	446, 536
PsuI	RGATCY	2 cut(s)	305, 767
PsyI	GACNNNGTC	1 cut(s)	858
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	855
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	912, 966
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	7 cut(s)	305, 437, 538, 562, 767, 889, 982
Sau96I	GGNCC	1 cut(s)	974
SchI	GAGTC	4 cut(s)	173, 266, 495, 743
ScrFI	CCNGG	2 cut(s)	10, 310
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	8 cut(s)	52, 73, 100, 118, 170, 241, 728, 811
SfaNI	GCATC	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	518
Sfr274I	CTCGAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	974
SlaI	CTCGAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	313
SspDI	GGCGCC	1 cut(s)	516
SspMI	CTAG	4 cut(s)	92, 435, 552, 642
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	8, 308
StyI	CCWWGG	2 cut(s)	105, 919
TaaI	ACNGT	2 cut(s)	615, 944
TaqI	TCGA	3 cut(s)	30, 152, 275
TasI	AATT	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	912, 966
Tru9I	TTAA	2 cut(s)	912, 966
TscAI	CASTG	3 cut(s)	214, 342, 361
TseFI	GTSAC	2 cut(s)	278, 860
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	2 cut(s)	278, 860
TspDTI	ATGAA	2 cut(s)	7, 393
TspRI	CASTG	3 cut(s)	214, 342, 361
Tth111I	GACNNNGTC	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	1 cut(s)	966
XbaI	TCTAGA	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	947
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	4 cut(s)	92, 435, 552, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.