Rorug04G0379300

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005757
Physical Location & Seq
Forward (+)
54990970 .. 54992377
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0379300.1

Sequence Viewer

Length: 1002 bp
ATGGCACTACCTCAACCTCCTACTGCTCTTCCCCAATACTTGCAAGAAAGTGAACTCAGCCAAGAAACCAGAGACATGATATCCACTCTACCTAGAGAAAAAGGTTGGGTTGCAAATCATCTCCATCAATACCAAGGCTTTTGGCACTCAAGTAGGCAGATGCAAGGAGTCTTGGCGTGCCAGAAACACTTCCAAGCCCAAGATTCTGATATTCTTCTTGTTACTACTCCCAAATCAGGTACCACTTGGCTCAAGGCAATTTTGTTTTCCCTAGTTAAACGAGGAGAGCACTATCATCCAGACCCTCAACACCACCCTTTGCTCACAAAAAACCCTCATGTTCTTGTGCCCTTCTTGGAGCTCAATCTGTACCTTGAGAAACCGGTGCCTGACCTCATGACCTCCTATGCCCCTCCTCGGCTCTTTTCAACTCACTTACCACTTGTGTCTCTACCGGAATCAGTCAAAGGCTCTGCTTGCAAGGTTGTCTATTTGTGTAGAAACCCTAAGGACACATTTATTTCACTCTGGCACTTCACAAACAGATTGAGACCCGAGGGTAGGGGAACCAATCCACTTGAAGAAGCATTGGAAAAGTTCTGCAGGGGAGTGAGTTTGTATGGACCCTTTTGGGATCATGTGTTGGGGTACTGGAATGAGAGCTTGAAAAGGCCTGAAAGGGTATTTTTCATCAAATATGAGGAAATGAAAGGACAACCCGGTTTTCACTTGAGGAGGCTAGCCGAGTTCTTGGGGTGCCCATTTTTCCCAGAAGAAGAGGCACAGGGAGTGGTGGACAACATCTTAAGGCTGTGTAGTTTTGAGACTCTGAGCAATTTGGATGTGAACAAAAATGGGAAGTTATCGTCCGGCGAGGAGCATAGTGCTTTCTTTCGGCGAGGGGAGGCTGGAGAGTGGAGGAATCTTTTGACAGCTAAGATGGCGGAACAGCTAGACCGTATCACTGAGGAGAAGTGGCAAGGTTCTGGATTAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Katanin_con80 WD40

Protein Analysis

333

Amino Acids

38.37

Weight (kDa)

7.24

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 330 3.2e-73 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 3 cut(s) 239, 385, 756
AciI CCGC 1 cut(s) 944
AclWI GGATC 1 cut(s) 642
AcsI RAATTY 1 cut(s) 995
AfaI GTAC 3 cut(s) 241, 371, 650
AfiI CCNNNNNNNGG 3 cut(s) 236, 417, 561
AflII CTTAAG 1 cut(s) 805
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 3 cut(s) 429, 581, 667
AluBI AGCT 4 cut(s) 361, 663, 935, 952
AluI AGCT 4 cut(s) 361, 663, 935, 952
Alw21I GWGCWC 2 cut(s) 291, 363
Alw26I GTCTC 4 cut(s) 66, 453, 544, 818
AlwI GGATC 1 cut(s) 642
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 995
AsiGI ACCGGT 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 188
Asp718I GGTACC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 623
AsuC2I CCSGG 1 cut(s) 720
AsuNHI GCTAGC 1 cut(s) 739
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 2 cut(s) 351, 761
BanI GGYRCC 3 cut(s) 239, 385, 756
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 291, 363
BccI CCATC 2 cut(s) 132, 934
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 66, 453, 544, 818
BfaI CTAG 4 cut(s) 93, 272, 740, 953
BfmI CTRYAG 1 cut(s) 601
BfrI CTTAAG 1 cut(s) 805
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 5 cut(s) 241, 387, 568, 625, 758
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 930
BpuEI CTTGAG 4 cut(s) 133, 236, 395, 751
BpuMI CCSGG 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 133, 416, 555
BsaWI WCCGGW 2 cut(s) 382, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 417, 561
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 656
Bse21I CCTNAGG 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 133, 416, 555
BseGI GGATG 2 cut(s) 295, 847
BseLI CCNNNNNNNGG 3 cut(s) 236, 417, 561
BseMII CTCAG 3 cut(s) 70, 821, 957
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 5 cut(s) 297, 405, 748, 890, 983
BseSI GKGCMC 2 cut(s) 351, 761
BshFI GGCC 1 cut(s) 673
BshNI GGYRCC 3 cut(s) 239, 385, 756
BshTI ACCGGT 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 291, 363
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 4 cut(s) 383, 455, 720, 870
BslI CCNNNNNNNGG 3 cut(s) 236, 417, 561
BsmAI GTCTC 4 cut(s) 66, 453, 544, 818
BsnI GGCC 1 cut(s) 673
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 4 cut(s) 291, 351, 363, 761
Bsp143I GATC 1 cut(s) 634
BspACI CCGC 1 cut(s) 944
BspANI GGCC 1 cut(s) 673
BspCNI CTCAG 3 cut(s) 69, 822, 958
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 5 cut(s) 241, 387, 568, 625, 758
BspMAI CTGCAG 1 cut(s) 605
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 642
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 3 cut(s) 239, 385, 756
BspTI CTTAAG 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 1 cut(s) 656
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 133, 416, 555
BssMI GATC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 959
Bst6I CTCTTC 2 cut(s) 33, 771
BstAFI CTTAAG 1 cut(s) 805
BstC8I GCNNGC 3 cut(s) 178, 478, 741
BstDEI CTNAG 5 cut(s) 56, 507, 830, 936, 966
BstF5I GGATG 2 cut(s) 295, 847
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 4 cut(s) 66, 453, 544, 818
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 2 cut(s) 477, 941
BstSCI CCNGG 1 cut(s) 718
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 2 cut(s) 351, 761
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 1 cut(s) 673
BtsCI GGATG 2 cut(s) 295, 847
BtsIMutI CAGTG 1 cut(s) 963
Cac8I GCNNGC 3 cut(s) 178, 478, 741
CciI TCATGA 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 623
Csp6I GTAC 3 cut(s) 240, 370, 649
CspAI ACCGGT 1 cut(s) 382
CviAII CATG 4 cut(s) 76, 338, 397, 638
CviQI GTAC 3 cut(s) 240, 370, 649
DdeI CTNAG 5 cut(s) 56, 507, 830, 936, 966
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eam1104I CTCTTC 2 cut(s) 33, 771
EarI CTCTTC 2 cut(s) 33, 771
EciI GGCGGA 1 cut(s) 959
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 544
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 554
EcoICRI GAGCTC 1 cut(s) 361
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 79, 341, 400, 641
FaiI YATR 8 cut(s) 77, 339, 398, 408, 621, 639, 699, 882
FatI CATG 4 cut(s) 75, 337, 396, 637
FokI GGATG 2 cut(s) 282, 854
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 4 cut(s) 93, 272, 740, 953
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 1 cut(s) 673
HapII CCGG 4 cut(s) 383, 455, 720, 870
Hin1II CATG 4 cut(s) 79, 341, 400, 641
HinfI GANTC 5 cut(s) 168, 203, 458, 826, 922
HpaII CCGG 4 cut(s) 383, 455, 720, 870
Hpy166II GTNNAC 3 cut(s) 53, 796, 847
Hpy188I TCNGA 2 cut(s) 208, 831
Hpy188III TCNNGA 3 cut(s) 299, 397, 987
Hpy8I GTNNAC 3 cut(s) 53, 796, 847
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 959
HpyCH4V TGCA 5 cut(s) 43, 113, 163, 480, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 941
HpyF3I CTNAG 5 cut(s) 56, 507, 830, 936, 966
Hsp92II CATG 4 cut(s) 79, 341, 400, 641
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 634
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 358, 877
LweI GCATC 1 cut(s) 150
MaeI CTAG 4 cut(s) 93, 272, 740, 953
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 5 cut(s) 20, 206, 593, 785, 788
MhlI GDGCHC 4 cut(s) 291, 351, 363, 761
MluCI AATT 3 cut(s) 258, 835, 995
MlyI GAGTC 2 cut(s) 177, 820
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 3 cut(s) 276, 806, 992
MspCI CTTAAG 1 cut(s) 805
MspI CCGG 4 cut(s) 383, 455, 720, 870
MspR9I CCNGG 1 cut(s) 720
MwoI GCNNNNNNNGC 2 cut(s) 477, 941
NciI CCSGG 1 cut(s) 720
NdeII GATC 1 cut(s) 634
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 4 cut(s) 79, 341, 400, 641
NlaIV GGNNCC 5 cut(s) 241, 387, 568, 625, 758
NmeAIII GCCGAG 2 cut(s) 397, 769
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 203, 458, 922
PinAI ACCGGT 1 cut(s) 382
PleI GAGTC 2 cut(s) 176, 820
PpsI GAGTC 2 cut(s) 176, 820
Psp124BI GAGCTC 1 cut(s) 363
PspN4I GGNNCC 5 cut(s) 241, 387, 568, 625, 758
PspPI GGNCC 1 cut(s) 623
PstI CTGCAG 1 cut(s) 605
RsaI GTAC 3 cut(s) 241, 371, 650
RsaNI GTAC 3 cut(s) 240, 370, 649
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 276, 806, 992
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 2 cut(s) 177, 820
ScrFI CCNGG 1 cut(s) 720
SduI GDGCHC 4 cut(s) 291, 351, 363, 761
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 623
SmlI CTYRAG 5 cut(s) 148, 251, 374, 730, 805
SmoI CTYRAG 5 cut(s) 148, 251, 374, 730, 805
Sse9I AATT 3 cut(s) 258, 835, 995
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 944
SspMI CTAG 4 cut(s) 93, 272, 740, 953
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 1 cut(s) 718
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 959
TasI AATT 3 cut(s) 258, 835, 995
TfiI GAWTC 3 cut(s) 203, 458, 922
Tru1I TTAA 3 cut(s) 276, 806, 992
Tru9I TTAA 3 cut(s) 276, 806, 992
TscAI CASTG 1 cut(s) 970
TspDTI ATGAA 2 cut(s) 679, 722
TspRI CASTG 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 1 cut(s) 995
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 4 cut(s) 93, 272, 740, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.