Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003232

Physical Location & Seq

Genomic Coordinates Reverse (-)

56568357 .. 56572270

Gene Structure 3914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0400700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGACGGAACTCGAAGAACTAGTGGGATTTCTATCTTCCCCATCTCCAAATTTGACAAAGGCAGCTGTTGATATTGTTCATGGATTAACCGGGTCCGAAGATGGCTTGAAGTCTCTAGCCAGTCATGCAGAGATTCTGCTGCCGCCATTATGGCGGCTCTTAGCCGGAAAGAAGGAGGTCTCGGAACCTGCAGCAGTAGCTCTTGTTAATCTTTCCCAGAGGTCGGCTGTAGCAGCAAAGATGGTTGATATGGGAATGATTAACCTGGCTATGGACCTTTTATTTAAGTCAGAACCTAATATAAGCCGGTTGCTGGTAATGCTTTTAGTTAATCTCACACAATTAGAAAGTGGTACTGCCTCTTTACTGCAGACTGGACATGAGAAAATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTTTGTAGATCCTCCTCCAGTGAAGATAGCGAAGATCCATTTGAACATGTTGGGTCTATACTTGTGAACATCTCAAAGAAAGAAGCAGGCAGGAAACTTTTACTGGACCCTAAGCGAGGACTTCTGAAGCAGATTATTAGACAGTATGACTCTTCTAGCCCATTGAGAAGGAAAGGGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGCGAGCGAGCTTCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTGCCTGTTGCTGGTAACAAGATTTACAGTCAGCAAGATAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGAGGCAGGTCTAAGAGCCTTTTGGTCTGTCAATGGACCAAGAATAATACAAGTGGGTTATGAAGATGAGGAAGATCCTAAAGTAATGGAAGCATATGAGCAACTCGGCTCCTTGTTGATTAATAGCAGCGGGACGGAGGAATCAGCAATTGAGACATCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0010021 GO:0042802 GO:0043170 GO:0071704 GO:1901135 GO:1901137 GO:1901576 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026

Pfam Domains

Protein Families

CBM53 Glyco_transf_5 Glycos_transf_1

Protein Analysis

337

Amino Acids

36.97

Weight (kDa)

5.0

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF383	PF04063	98 - 270	5.9e-38	Domain of unknown function (DUF383)
DUF384	PF04064	276 - 328	9.7e-11	Domain of unknown function (DUF384)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11720 AT1G11720
fragaria_vesca	FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040 FvH4_3g02040
malus_domestica	MD05G1347400.v1.1 MD10G1321600.v1.1
prunus_persica	Prupe.4G020100_v2.0.a1 Prupe.4G020100_v2.0.a1 Prupe.4G020100_v2.0.a1 Prupe.4G020100_v2.0.a1 Prupe.4G020100_v2.0.a1
pyrus_communis	pycom05g31510 pycom10g27230
rosa_chinensis	RchiOBHm_Chr5g0002941
rosa_laevigata	RLG00000031072
rosa_multiflora	Rmu_sc0013603.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072920
rosa_rugosa	Rorug04G0400700 Rorug04G0400800 Rorug04G0400800
rosa_samantha	Rh5AG023700 Rh5BG026500 Rh5CG026400 Rh5DG025000
rosa_wichuraiana	Rw5G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	199, 845
AciI	CCGC	3 cut(s)	146, 157, 978
AclWI	GGATC	4 cut(s)	429, 455, 791, 917
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	52, 655, 804
AcuI	CTGAAG	3 cut(s)	572, 635, 834
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	5 cut(s)	226, 274, 316, 542, 707
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	3 cut(s)	112, 470, 635
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	267, 819
AluBI	AGCT	7 cut(s)	68, 203, 415, 638, 649, 689, 757
AluI	AGCT	7 cut(s)	68, 203, 415, 638, 649, 689, 757
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	3 cut(s)	120, 187, 995
AlwI	GGATC	4 cut(s)	429, 455, 791, 917
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	6 cut(s)	65, 142, 194, 236, 638, 975
ApoI	RAATTY	3 cut(s)	52, 655, 804
AseI	ATTAAT	1 cut(s)	969
AspS9I	GGNCC	4 cut(s)	96, 277, 532, 884
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	4 cut(s)	96, 277, 532, 884
BalI	TGGCCA	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	6 cut(s)	77, 129, 206, 248, 625, 987
BccI	CCATC	3 cut(s)	52, 98, 238
BciT130I	CCWGG	2 cut(s)	269, 821
BclI	TGATCA	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	120, 187, 995
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	3 cut(s)	23, 119, 582
BfmI	CTRYAG	3 cut(s)	192, 231, 371
BfuAI	ACCTGC	2 cut(s)	199, 845
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	8 cut(s)	66, 143, 146, 158, 195, 237, 639, 976
BlsI	GCNGC	8 cut(s)	67, 144, 147, 159, 196, 238, 640, 977
Bme1390I	CCNGG	3 cut(s)	94, 269, 821
Bme18I	GGWCC	4 cut(s)	96, 277, 532, 884
BmgT120I	GGNCC	4 cut(s)	96, 277, 532, 884
BmiI	GGNNCC	4 cut(s)	97, 189, 534, 958
BmrFI	CCNGG	3 cut(s)	94, 269, 821
BpmI	CTGGAG	2 cut(s)	427, 842
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 274, 316, 542, 707
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	5 cut(s)	123, 382, 444, 534, 788
Bse8I	GATNNNNATC	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	269, 821
BseJI	GATNNNNATC	1 cut(s)	34
BseLI	CCNNNNNNNGG	5 cut(s)	226, 274, 316, 542, 707
BseNI	ACTGG	5 cut(s)	123, 382, 444, 534, 788
BseRI	GAGGAG	1 cut(s)	430
BseXI	GCAGC	6 cut(s)	77, 129, 206, 248, 625, 987
BshFI	GGCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	3 cut(s)	93, 168, 310
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	5 cut(s)	226, 274, 316, 542, 707
BsmAI	GTCTC	3 cut(s)	120, 187, 995
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	1 cut(s)	685
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	402, 769
Bsp143I	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
BspACI	CCGC	3 cut(s)	146, 157, 978
BspANI	GGCC	1 cut(s)	685
BspLI	GGNNCC	4 cut(s)	97, 189, 534, 958
BspMAI	CTGCAG	2 cut(s)	196, 375
BspMI	ACCTGC	2 cut(s)	199, 845
BspPI	GGATC	4 cut(s)	429, 455, 791, 917
BspTNI	GGTCTC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	5 cut(s)	123, 382, 444, 534, 788
BssAI	RCCGGY	1 cut(s)	309
BssMI	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
Bst2UI	CCWGG	2 cut(s)	269, 821
Bst4CI	ACNGT	3 cut(s)	570, 626, 725
Bst6I	CTCTTC	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	514, 643, 647, 687
BstDEI	CTNAG	4 cut(s)	163, 537, 758, 860
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstKTI	GATC	7 cut(s)	425, 437, 463, 740, 799, 840, 925
BstMAI	GTCTC	3 cut(s)	120, 187, 995
BstMBI	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 154, 200, 236, 322, 691, 754
BstNI	CCWGG	2 cut(s)	269, 821
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	3 cut(s)	92, 267, 819
BstSFI	CTRYAG	3 cut(s)	192, 231, 371
BstV1I	GCAGC	6 cut(s)	77, 129, 206, 248, 625, 987
BstX2I	RGATCY	3 cut(s)	434, 460, 922
BstYI	RGATCY	3 cut(s)	434, 460, 922
BsuRI	GGCC	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	2 cut(s)	199, 845
Cac8I	GCNNGC	4 cut(s)	514, 643, 647, 687
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	4 cut(s)	96, 277, 532, 884
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	5 cut(s)	83, 128, 383, 473, 835
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	4 cut(s)	163, 537, 758, 860
DpnI	GATC	7 cut(s)	424, 436, 462, 739, 798, 839, 924
DpnII	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	4 cut(s)	96, 277, 532, 884
Eco57I	CTGAAG	3 cut(s)	572, 635, 834
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	267, 819
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	5 cut(s)	86, 131, 386, 476, 838
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	5 cut(s)	82, 127, 382, 472, 834
FauI	CCCGC	1 cut(s)	971
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	8 cut(s)	66, 143, 146, 158, 195, 237, 639, 976
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	8 cut(s)	66, 143, 146, 158, 195, 237, 639, 976
FspBI	CTAG	3 cut(s)	23, 119, 582
GluI	GCNGC	8 cut(s)	66, 143, 146, 158, 195, 237, 639, 976
GsuI	CTGGAG	2 cut(s)	427, 842
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	3 cut(s)	93, 168, 310
Hin1II	CATG	5 cut(s)	86, 131, 386, 476, 838
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	136, 575, 989
HpaII	CCGG	3 cut(s)	93, 168, 310
Hpy166II	GTNNAC	2 cut(s)	493, 785
Hpy188I	TCNGA	6 cut(s)	100, 187, 295, 552, 654, 673
Hpy188III	TCNNGA	2 cut(s)	609, 800
Hpy8I	GTNNAC	2 cut(s)	493, 785
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	169, 588
HpyCH4III	ACNGT	3 cut(s)	570, 626, 725
HpyCH4V	TGCA	4 cut(s)	131, 194, 373, 394
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 154, 200, 236, 322, 691, 754
HpyF3I	CTNAG	4 cut(s)	163, 537, 758, 860
Hsp92II	CATG	5 cut(s)	86, 131, 386, 476, 838
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
LmnI	GCTCC	1 cut(s)	962
Lsp1109I	GCAGC	6 cut(s)	77, 129, 206, 248, 625, 987
MaeI	CTAG	3 cut(s)	23, 119, 582
MaeIII	GTNAC	2 cut(s)	620, 710
MalI	GATC	7 cut(s)	424, 436, 462, 739, 798, 839, 924
MboI	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
MboII	GAAGA	8 cut(s)	29, 30, 113, 461, 470, 570, 923, 932
MfeI	CAATTG	2 cut(s)	774, 996
MflI	RGATCY	3 cut(s)	434, 460, 922
MhlI	GDGCHC	2 cut(s)	402, 769
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	7 cut(s)	52, 344, 655, 774, 804, 996, 1009
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	1 cut(s)	569
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	6 cut(s)	89, 210, 264, 288, 333, 969
Msp20I	TGGCCA	1 cut(s)	685
MspA1I	CMGCKG	2 cut(s)	68, 978
MspI	CCGG	3 cut(s)	93, 168, 310
MspR9I	CCNGG	3 cut(s)	94, 269, 821
MunI	CAATTG	2 cut(s)	774, 996
MvaI	CCWGG	2 cut(s)	269, 821
MwoI	GCNNNNNNNGC	7 cut(s)	128, 154, 200, 236, 322, 691, 754
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
NlaIII	CATG	5 cut(s)	86, 131, 386, 476, 838
NlaIV	GGNNCC	4 cut(s)	97, 189, 534, 958
NmeAIII	GCCGAG	1 cut(s)	933
NspI	RCATGY	1 cut(s)	476
PciI	ACATGT	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	136, 989
PfoI	TCCNGGA	1 cut(s)	819
PkrI	GCNGC	8 cut(s)	67, 144, 147, 159, 196, 238, 640, 977
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PscI	ACATGT	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	969
Psp6I	CCWGG	2 cut(s)	267, 819
PspGI	CCWGG	2 cut(s)	267, 819
PspN4I	GGNNCC	4 cut(s)	97, 189, 534, 958
PspPI	GGNCC	4 cut(s)	96, 277, 532, 884
PstI	CTGCAG	2 cut(s)	196, 375
PsuI	RGATCY	3 cut(s)	434, 460, 922
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	6 cut(s)	89, 210, 264, 288, 333, 969
SatI	GCNGC	8 cut(s)	66, 143, 146, 158, 195, 237, 639, 976
Sau3AI	GATC	7 cut(s)	422, 434, 460, 737, 796, 837, 922
Sau96I	GGNCC	4 cut(s)	96, 277, 532, 884
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	94, 269, 821
SduI	GDGCHC	2 cut(s)	402, 769
SfcI	CTRYAG	3 cut(s)	192, 231, 371
SinI	GGWCC	4 cut(s)	96, 277, 532, 884
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	7 cut(s)	52, 344, 655, 774, 804, 996, 1009
SsiI	CCGC	3 cut(s)	146, 157, 978
SspMI	CTAG	3 cut(s)	23, 119, 582
StyD4I	CCNGG	3 cut(s)	92, 267, 819
TaaI	ACNGT	3 cut(s)	570, 626, 725
TaqI	TCGA	1 cut(s)	15
TasI	AATT	7 cut(s)	52, 344, 655, 774, 804, 996, 1009
TauI	GCSGC	2 cut(s)	148, 160
TfiI	GAWTC	2 cut(s)	136, 989
Tru1I	TTAA	6 cut(s)	89, 210, 264, 288, 333, 969
Tru9I	TTAA	6 cut(s)	89, 210, 264, 288, 333, 969
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	6 cut(s)	65, 142, 194, 236, 638, 975
TspDTI	ATGAA	3 cut(s)	71, 425, 924
TspGWI	ACGGA	2 cut(s)	23, 998
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	4 cut(s)	96, 277, 532, 884
VspI	ATTAAT	1 cut(s)	969
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	3 cut(s)	52, 655, 804
XceI	RCATGY	1 cut(s)	476
XspI	CTAG	3 cut(s)	23, 119, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.