Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004422

Physical Location & Seq

Genomic Coordinates Reverse (-)

57008242 .. 57008601

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0406100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGACAAAATTGCAGGCCTAGTCCTGCTATCTCTCTTTTGCGTCTCTTTTGCTGGTTGTGTCTTGGAGCTCCCAGAGCAGAAGTTTGATGGGCAAACGGTTCTTTTGGATTGGATGAGGTTGGATCGCGGTGGTGAGTCGCGATGCAGTGATGGAGGGACATCGGTTCTAAGAGGCTGGAGAATTGGAATCGGGGTTCTGCGTTTTTCTGGTTTGTCGCCGGCATGGGCTAAGCAAAGTCGTGGCTTTGATGGTGTTGCTGGGACATTAGTAGTGGTCGTCGGCGTCGTTCTCGTCAGCGATGGCTATTGCAGTTTGGCATCCTCCATTGCAGGTCCTCAAGATGAAGGAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001516 GO:0001676 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006690 GO:0006692 GO:0006693 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0009056 GO:0009058 GO:0009395 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0010876 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0015909 GO:0016020 GO:0016042 GO:0016053 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019637 GO:0019752 GO:0031090 GO:0031903 GO:0032309 GO:0032787 GO:0033036 GO:0033559 GO:0034638 GO:0042445 GO:0042446 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046337 GO:0046338 GO:0046394 GO:0046434 GO:0046456 GO:0046457 GO:0046470 GO:0046475 GO:0046486 GO:0046503 GO:0046717 GO:0046903 GO:0046942 GO:0047372 GO:0047499 GO:0050482 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071715 GO:0072330 GO:0097164 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901571 GO:1901575 GO:1901576 GO:1903963

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm LRR_8 Patatin

Protein Analysis

119

Amino Acids

12.55

Weight (kDa)

5.01

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61850 AT1G61850
fragaria_vesca	FvH4_3g02460 FvH4_3g02460 FvH4_3g02460 FvH4_3g02460 FvH4_3g02460
malus_domestica	MD05G1342900.v1.1 MD10G1317800.v1.1
prunus_persica	Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1 Prupe.4G024000_v2.0.a1
pyrus_communis	pycom05g31210 pycom05g31230 pycom10g26910 pycom10g26930
rosa_chinensis	RchiOBHm_Chr5g0003711
rosa_laevigata	RLG00000031168
rosa_multiflora	Rmu_co8519183.1_g000001 Rmu_sc0000500.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072250
rosa_rugosa	Rorug04G0406100 Rorug04G0406200
rosa_samantha	Rh5AG033000 Rh5BG031600 Rh5CG035700 Rh5DG032200
rosa_wichuraiana	Rw5G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	323
AccII	CGCG	2 cut(s)	129, 142
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	285
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	4 cut(s)	83, 146, 245, 296
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	323
BlpI	GCTNAGC	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmsI	GCATC	2 cut(s)	134, 329
BpmI	CTGGAG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	120, 320
BseMI	GCAATG	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	129, 142
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	172, 277
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	172, 277
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp68I	TCGCGA	1 cut(s)	142
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	129, 142
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	16, 222
BstDEI	CTNAG	2 cut(s)	170, 231
BstF5I	GGATG	2 cut(s)	120, 320
BstFNI	CGCG	2 cut(s)	129, 142
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstUI	CGCG	2 cut(s)	129, 142
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	2 cut(s)	157, 315
BtsCI	GGATG	2 cut(s)	120, 320
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
BtuMI	TCGCGA	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	16, 222
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	2 cut(s)	31, 274
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	6 cut(s)	18, 70, 177, 230, 246, 306
CviKI_1	RGCY	6 cut(s)	18, 70, 177, 230, 246, 306
DdeI	CTNAG	2 cut(s)	170, 231
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	228
FaiI	YATR	1 cut(s)	226
FaqI	GGGAC	2 cut(s)	172, 277
FatI	CATG	1 cut(s)	224
FokI	GGATG	2 cut(s)	127, 307
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	2 cut(s)	31, 274
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	228
HinfI	GANTC	2 cut(s)	137, 189
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	141, 341
Hpy99I	CGWCG	2 cut(s)	284, 290
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	14, 147, 312, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	170, 231
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	67, 75
LpnPI	CCDG	8 cut(s)	38, 39, 87, 163, 195, 234, 246, 318
LweI	GCATC	2 cut(s)	134, 329
MaeI	CTAG	1 cut(s)	20
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	9, 183
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	111, 149, 167, 334, 348
MroNI	GCCGGC	1 cut(s)	220
MspI	CCGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	129, 142
MwoI	GCNNNNNNNGC	1 cut(s)	76
NaeI	GCCGGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	124
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	228
NruI	TCGCGA	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	335
PspPPI	RGGWCCY	1 cut(s)	335
RruI	TCGCGA	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	3 cut(s)	72, 122, 337
SfaNI	GCATC	2 cut(s)	134, 329
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	9, 183
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	2 cut(s)	9, 183
TfiI	GAWTC	1 cut(s)	189
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	335
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.