Rorug06G0074500

Translation initiation factor eIF-2B subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
9906346 .. 9908046
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0074500.1

Sequence Viewer

Length: 1434 bp
ATGGGAACCCAAAACCACCAGCTTCATATTGCTTTCTTTCCCTTCATGGCTCAAGGCCACATGATCCCAGCCATTCACATGGCCAAGCTATTTGTTTCCAGAGGTCTCGAAGCCACCATCATCACAACCCCTGCAGATGCACCTTTCATCCACAAGAAGATTGAAAACTCAGGTACCCAGATCCACATTTACACAATCAAAGTGCCTACTGTTGAGGTGGGATTGCCAGAAAACTGTGAGAGCTTTCACTCTGCTACTTCGCCGGAAATGCAAGCCAAGTTCTTCAAAGCCACAACTTTGCTTGGACCACAGCTTGAGCAGTTCTTGAAGCAAAAGAGACCCAATTGCCTTGTTGCTGACATGTTCTTTCCGTGGGCTACTGATGTGGCATCAAAGCTTGGGATTCTGATGCTCATTTTCCATGGAATTAGTTACTTCGCCTTGTGCGCTACACTGTGTGTGCATCAGTATAAGCCTCACAACCAGGTTTCATCTGATTCAGAACCTTTTGTTATTCCTAACTTACCCGACAAGATCGAGCTGAATAGAAAGAAAATTCCTGATTTTGTTAGGGATGGAGTTGAGAATGAATTTAAAAATATGCATGAAGAAGCAATGGGAGCACTAAGTAGGAGCTATGGGGTTCTTGTTAACAGCTTTTCTGAACTTGAATCTGCGTATGCTGATCATTTTAGCAAGGTTTTGGGGATAAGATCTTGGCATATAGGCCCACTTTGGTTATGTAATGAGGGAGGCCTTGAAGTTGAAGATCAAAAATACTCTATTGATGTACACGAATGCATGAAGTGGCTTGACACAAAGAAGCCCAATTCAGTTGTTTATGTATGCTTTGGGAGTTTGGCAAATTTTGGTGATGCTCAGCTCCTAGAAATTGCATTAGGTCTTCAGAGTTCAGGGTACCATTTCATTTGGGTTGTCAATAAACAAAAGAATATTGAAGAAAACTGGTTGCCTCAAGGATATGAAGAGAGGATTGAAGGGAAGGGAATGATTATAAGAGGGTGGGCGCCGCAAGTGAAGATTCTTTCACATGAAGCAGTGGGAGGGTTTGTGACTCATTGTGGGTGGAACTCGACACTTGAAGCAGTGTGTGCTGGTGCGCCCATGGTGACATGGCCTCTGTTTGCAGAGCAGTTTTACAATGAGAAGTTGATAACCCAAGTGCTTGGAATCGGGGTTGGTGTTGGTGCTCAAGAATGGACTAGAGTGGATAGGGAGATTGTGAAGAGTGAGAACATAGAGAAGGCTGTGACAAAGGTGTTGGGTGAAGAAGCAGAGGAAATGAGAAGCAGAGCCAGGGGTTATGCAATAATGGCAAGAAGGGCTATTGAAGAAGGGGGTTCATCTTACTCGGATCTTATTGGTTTGATTGAAGAATTAAGGTCTCATGCCATTACTAGAGGAACAATTTGA

Protein Analysis

477

Amino Acids

53.43

Weight (kDa)

5.92

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 245 3.6e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 270 - 430 1.6e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1016
Acc65I GGTACC 2 cut(s) 173, 918
AccB1I GGYRCC 3 cut(s) 173, 918, 1027
AciI CCGC 1 cut(s) 1031
AclWI GGATC 3 cut(s) 58, 175, 1383
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 555, 590, 865
AcuI CTGAAG 1 cut(s) 890
AcyI GRCGYC 1 cut(s) 1028
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 3 cut(s) 175, 792, 920
AflIII ACRYGT 1 cut(s) 360
AjnI CCWGG 2 cut(s) 483, 1316
AluBI AGCT 9 cut(s) 22, 88, 243, 313, 397, 541, 636, 657, 883
AluI AGCT 9 cut(s) 22, 88, 243, 313, 397, 541, 636, 657, 883
Alw21I GWGCWC 2 cut(s) 625, 1213
Alw26I GTCTC 3 cut(s) 110, 331, 1410
AlwI GGATC 3 cut(s) 58, 175, 1383
AoxI GGCC 5 cut(s) 55, 81, 727, 754, 1136
ApoI RAATTY 3 cut(s) 555, 590, 865
Asp718I GGTACC 2 cut(s) 173, 918
AspLEI GCGC 3 cut(s) 449, 1030, 1123
AspS9I GGNCC 2 cut(s) 305, 728
AsuHPI GGTGA 3 cut(s) 884, 1141, 1298
AvaII GGWCC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 3 cut(s) 173, 918, 1027
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 2 cut(s) 625, 1213
BccI CCATC 2 cut(s) 125, 569
BciT130I CCWGG 2 cut(s) 485, 1318
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 3 cut(s) 110, 331, 1410
BfaI CTAG 3 cut(s) 887, 1224, 1419
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 1031
BglII AGATCT 1 cut(s) 713
BisI GCNGC 1 cut(s) 1031
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 1032
Bme1390I CCNGG 2 cut(s) 485, 1318
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 305, 728
BmiI GGNNCC 4 cut(s) 7, 175, 920, 1029
BmrFI CCNGG 2 cut(s) 485, 1318
BmsI GCATC 5 cut(s) 127, 398, 399, 472, 865
BpiI GAAGAC 1 cut(s) 896
Bpu1102I GCTNAGC 1 cut(s) 879
BpuEI CTTGAG 4 cut(s) 36, 335, 960, 1197
BsaHI GRCGYC 1 cut(s) 1028
BsaI GGTCTC 3 cut(s) 110, 331, 1410
BsaJI CCNNGG 4 cut(s) 371, 421, 1125, 1317
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bse1I ACTGG 1 cut(s) 971
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 2 cut(s) 485, 1318
BseDI CCNNGG 4 cut(s) 371, 421, 1125, 1317
BseGI GGATG 2 cut(s) 147, 580
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 2 cut(s) 183, 893
BseNI ACTGG 1 cut(s) 971
BseYI CCCAGC 1 cut(s) 67
BshFI GGCC 5 cut(s) 57, 83, 729, 756, 1138
BshNI GGYRCC 3 cut(s) 173, 918, 1027
BsiHKAI GWGCWC 2 cut(s) 625, 1213
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 3 cut(s) 110, 331, 1410
BsmI GAATGC 1 cut(s) 803
BsnI GGCC 5 cut(s) 57, 83, 729, 756, 1138
Bso31I GGTCTC 3 cut(s) 110, 331, 1410
Bsp1286I GDGCHC 2 cut(s) 625, 1213
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
Bsp1720I GCTNAGC 1 cut(s) 879
Bsp19I CCATGG 2 cut(s) 421, 1125
BspACI CCGC 1 cut(s) 1031
BspANI GGCC 5 cut(s) 57, 83, 729, 756, 1138
BspCNI CTCAG 2 cut(s) 182, 892
BspLI GGNNCC 4 cut(s) 7, 175, 920, 1029
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 3 cut(s) 58, 175, 1383
BspT107I GGYRCC 3 cut(s) 173, 918, 1027
BspTNI GGTCTC 3 cut(s) 110, 331, 1410
BsrDI GCAATG 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 1 cut(s) 971
BssECI CCNNGG 4 cut(s) 371, 421, 1125, 1317
BssMI GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
BssNI GRCGYC 1 cut(s) 1028
BssT1I CCWWGG 2 cut(s) 421, 1125
Bst2UI CCWGG 2 cut(s) 485, 1318
Bst4CI ACNGT 3 cut(s) 211, 236, 456
Bst6I CTCTTC 2 cut(s) 981, 1241
BstACI GRCGYC 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 169, 626, 879
BstDSI CCRYGG 3 cut(s) 371, 421, 1125
BstF5I GGATG 2 cut(s) 147, 580
BstH2I RGCGCY 1 cut(s) 1031
BstHHI GCGC 3 cut(s) 449, 1030, 1123
BstKTI GATC 7 cut(s) 66, 183, 537, 688, 716, 772, 1378
BstMAI GTCTC 3 cut(s) 110, 331, 1410
BstMBI GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
BstMWI GCNNNNNNNGC 6 cut(s) 268, 446, 620, 1112, 1334, 1343
BstNI CCWGG 2 cut(s) 485, 1318
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 483, 1316
BstSFI CTRYAG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 3 cut(s) 180, 713, 1375
BstXI CCANNNNNNTGG 2 cut(s) 79, 1187
BstYI RGATCY 3 cut(s) 180, 713, 1375
BsuRI GGCC 5 cut(s) 57, 83, 729, 756, 1138
BtgI CCRYGG 3 cut(s) 371, 421, 1125
BtsCI GGATG 2 cut(s) 147, 580
BtsI GCAGTG 2 cut(s) 1065, 1113
BtsIMutI CAGTG 3 cut(s) 452, 1065, 1113
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 3 cut(s) 449, 1030, 1123
Cfr13I GGNCC 2 cut(s) 305, 728
CsiI ACCWGGT 1 cut(s) 483
Csp6I GTAC 3 cut(s) 174, 791, 919
CviQI GTAC 3 cut(s) 174, 791, 919
DdeI CTNAG 3 cut(s) 169, 626, 879
DinI GGCGCC 1 cut(s) 1029
DpnI GATC 7 cut(s) 65, 182, 536, 687, 715, 771, 1377
DpnII GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
DraI TTTAAA 1 cut(s) 595
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 981, 1241
EarI CTCTTC 2 cut(s) 981, 1241
Eco130I CCWWGG 2 cut(s) 421, 1125
Eco147I AGGCCT 1 cut(s) 756
Eco31I GGTCTC 3 cut(s) 110, 331, 1410
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 890
EcoRII CCWGG 2 cut(s) 483, 1316
EcoT14I CCWWGG 2 cut(s) 421, 1125
EcoT22I ATGCAT 2 cut(s) 606, 803
EgeI GGCGCC 1 cut(s) 1029
EheI GGCGCC 1 cut(s) 1029
ErhI CCWWGG 2 cut(s) 421, 1125
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 1031
FokI GGATG 2 cut(s) 134, 587
Fsp4HI GCNGC 1 cut(s) 1031
FspBI CTAG 3 cut(s) 887, 1224, 1419
GlaI GCGC 3 cut(s) 448, 1029, 1122
GluI GCNGC 1 cut(s) 1031
GsaI CCCAGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 1031
HaeIII GGCC 5 cut(s) 57, 83, 729, 756, 1138
HapII CCGG 1 cut(s) 263
HhaI GCGC 3 cut(s) 449, 1030, 1123
Hin1I GRCGYC 1 cut(s) 1028
Hin6I GCGC 3 cut(s) 447, 1028, 1121
HinP1I GCGC 3 cut(s) 447, 1028, 1121
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 6 cut(s) 403, 497, 671, 1042, 1075, 1191
HpaI GTTAAC 1 cut(s) 652
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 884, 1141, 1298
Hpy166II GTNNAC 2 cut(s) 652, 793
Hpy188I TCNGA 6 cut(s) 408, 496, 502, 664, 909, 1375
Hpy188III TCNNGA 5 cut(s) 99, 107, 325, 560, 1214
Hpy8I GTNNAC 2 cut(s) 652, 793
HpyAV CCTTC 6 cut(s) 52, 992, 997, 1258, 1335, 1349
HpyCH4III ACNGT 3 cut(s) 211, 236, 456
HpyCH4V TGCA 9 cut(s) 134, 140, 271, 463, 604, 801, 896, 1148, 1328
HpyF10VI GCNNNNNNNGC 6 cut(s) 268, 446, 620, 1112, 1334, 1343
HpyF3I CTNAG 3 cut(s) 169, 626, 879
Hsp92I GRCGYC 1 cut(s) 1028
HspAI GCGC 3 cut(s) 447, 1028, 1121
KasI GGCGCC 1 cut(s) 1027
KpnI GGTACC 2 cut(s) 177, 922
Ksp22I TGATCA 1 cut(s) 685
KspAI GTTAAC 1 cut(s) 652
Kzo9I GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
LmnI GCTCC 3 cut(s) 620, 633, 888
LweI GCATC 5 cut(s) 127, 398, 399, 472, 865
MabI ACCWGGT 1 cut(s) 483
MaeI CTAG 3 cut(s) 887, 1224, 1419
MaeIII GTNAC 4 cut(s) 431, 1072, 1129, 1270
MalI GATC 7 cut(s) 65, 182, 536, 687, 715, 771, 1377
MboI GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 3 cut(s) 180, 713, 1375
MhlI GDGCHC 2 cut(s) 625, 1213
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 9 cut(s) 343, 426, 555, 590, 829, 865, 891, 1397, 1428
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 1028
MlyI GAGTC 1 cut(s) 1069
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 2 cut(s) 606, 803
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 594, 651, 1400
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 485, 1318
MunI CAATTG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 2 cut(s) 485, 1318
MwoI GCNNNNNNNGC 6 cut(s) 268, 446, 620, 1112, 1334, 1343
NarI GGCGCC 1 cut(s) 1028
NcoI CCATGG 2 cut(s) 421, 1125
NdeII GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
NlaIV GGNNCC 4 cut(s) 7, 175, 920, 1029
NmuCI GTSAC 3 cut(s) 1072, 1129, 1270
NsiI ATGCAT 2 cut(s) 606, 803
NspI RCATGY 1 cut(s) 364
PceI AGGCCT 1 cut(s) 756
PciI ACATGT 1 cut(s) 360
PctI GAATGC 1 cut(s) 803
PfeI GAWTC 5 cut(s) 403, 497, 671, 1042, 1191
PkrI GCNGC 1 cut(s) 1032
PleI GAGTC 1 cut(s) 1069
PluTI GGCGCC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1069
PscI ACATGT 1 cut(s) 360
PsiI TTATAA 1 cut(s) 1016
Psp6I CCWGG 2 cut(s) 483, 1316
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 483, 1316
PspN4I GGNNCC 4 cut(s) 7, 175, 920, 1029
PspPI GGNCC 2 cut(s) 305, 728
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 3 cut(s) 180, 713, 1375
RsaI GTAC 3 cut(s) 175, 792, 920
RsaNI GTAC 3 cut(s) 174, 791, 919
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 3 cut(s) 594, 651, 1400
SatI GCNGC 1 cut(s) 1031
Sau3AI GATC 7 cut(s) 63, 180, 534, 685, 713, 769, 1375
Sau96I GGNCC 2 cut(s) 305, 728
SchI GAGTC 1 cut(s) 1069
ScrFI CCNGG 2 cut(s) 485, 1318
SduI GDGCHC 2 cut(s) 625, 1213
SexAI ACCWGGT 1 cut(s) 483
SfaNI GCATC 5 cut(s) 127, 398, 399, 472, 865
SfcI CTRYAG 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 1029
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 4 cut(s) 51, 314, 975, 1212
SmoI CTYRAG 4 cut(s) 51, 314, 975, 1212
Sse9I AATT 9 cut(s) 343, 426, 555, 590, 829, 865, 891, 1397, 1428
SseBI AGGCCT 1 cut(s) 756
SsiI CCGC 1 cut(s) 1031
SspDI GGCGCC 1 cut(s) 1027
SspI AATATT 1 cut(s) 955
SspMI CTAG 3 cut(s) 887, 1224, 1419
StuI AGGCCT 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 483, 1316
StyI CCWWGG 2 cut(s) 421, 1125
TaaI ACNGT 3 cut(s) 211, 236, 456
TaqI TCGA 3 cut(s) 108, 537, 1094
TasI AATT 9 cut(s) 343, 426, 555, 590, 829, 865, 891, 1397, 1428
TatI WGTACW 1 cut(s) 790
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 5 cut(s) 403, 497, 671, 1042, 1191
Tru1I TTAA 3 cut(s) 594, 651, 1400
Tru9I TTAA 3 cut(s) 594, 651, 1400
TscAI CASTG 3 cut(s) 459, 1065, 1113
TseFI GTSAC 3 cut(s) 1072, 1129, 1270
Tsp45I GTSAC 3 cut(s) 1072, 1129, 1270
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 3 cut(s) 459, 1065, 1113
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 3 cut(s) 555, 590, 865
XceI RCATGY 1 cut(s) 364
XspI CTAG 3 cut(s) 887, 1224, 1419
Zsp2I ATGCAT 2 cut(s) 606, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.