Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005877

Physical Location & Seq

Genomic Coordinates Reverse (-)

32633694 .. 32641172

Gene Structure 7479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGTCGCTTACTCAGGTGCTTCAAGAACATAAAGAGAGAAGGAAGAAGGATAGTAATGCTGTAATGACAATTGTTATTAAACGGTCAAAGCCTTCACCAATCACTCGCCAATCTCGACTGGGCACTGATGAGCTCTTTATGGCAGTAGATCCCAACACAAAGCAGCTCTTATATTATGAGGACAAGGCAGACCATGCAAAGGGATCTATATATCTTGATAAGTTATTGCTTGCTGATAAGTCTTCGATTTCTCTGCATAATGACAAACAGGATTGCTATATCGACATCTGCTCTCCTGAAGTCCTCAGCCTTTTCACAGACAATTTTGACTATCAACATTTACGTCGTCATTTTTTAAAGGGATTGCTTCTTGATGATATTATGGGTTACAAAATATTCACACATGAAATTCACTCGACTTATGCGGCTAGGATTGACAACTTCAGAAGCTATGATACAATCAGTAAGGACATAATTCAGAGATGGACTTACCCATTGGTGCCAGATGTTAAGTTTTTCGGAGATTCTTCAACGAAGCTGGAAAGACGGGGGATGTATCGAGCCTCAGATATAGGGCAATCACGATCTGCACAGATTGGTCCTTTTACAGTCATTGGGAATGGCACCAAGATTGGGGACAACACCAAAATTTCAAATTCTGTTATTGGAGAAGGGTGTTCTATTGGACCAAACGTTTCCATAGAAGGTTCTTATATATGGGATAATGTCACCATTGAAGATGGCTGCAAGCTAAGGCATGCTATAGTATGTGATGGAGTGATAATGAAGTCTGGGGCAGTTTTGGAATCGGGTGTAGTTTTGTCTTTCAAGGTAGTGATAGGACAACAATTTATTGCTCCTTCATACTTAATGGTATCTTTACTCCAACAACCAATAAAGCAAAATAGTGATGAGAAGCTAGAGTATGTTGACAATAGCACTGGTAATGCAGAAATTTCTTCTCTTACACATGCACTGGATATATCGAATGGGGAAATAGCGAACCAACAACAGGAGACACAGTGTTGGGTGACATCTGAGCTTGGTATTGGTGGGGCTGGTTATGTTTGGTCAGTTTGTGAAGGAGGCCATGATGAAGAGTGGAGGCATTCAGTTGCTCCCATTCCTGCAGAGAAACTTGCTGAGGTGATACAAGCTGCAGAGGATGATCTGGAGTTAGATCCAGATGGCAGCAGTCTCCCACCTTCAGGAGAGCTGAAACTTGATTCTGATTCTGATGAAGAGTATAGAGATGGTTCCTACTTTGAAAATGAGGTTGAAGCAACCTTCCTAAGAGCTGTGGATGAAAATATTAAAGTAGAGAATGTCGTCTTAGAAGTGAACTCACTGAGATTGTCATTCAACAAGCAAACTGTACACTGTGCTGGAGCTATATTTTATTCAATGATGAAATTGGCATTAGAAACTCCACATAATTCAGCAGTTGAATTGGTCCAAGCTACTACGAAGGTAATTACAAAATGGAAAGGACTGCTGAAGTATTACCTATCAGACATTGATGAAGAGATAGAAGTAATAATGAAATTTGAAGATATGTGTTTGGAGTCCGCTAAGGAGTTCTCCCCCGTGTTCGATAAGATACTCTATCAACTGTATGACCAAGAAGTTATACAGGAAGAGGCTATTCTGAGGTGGGATGATGAAAAGAGACATGCTGATGAATCAGATAGAATTTTTGTTAGGCAGGCTGAAACATTTATCCAATGGTTGAGAGAGGCATCTGAAGAAGAGGATGAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:0098772 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep Hexapep_2 NTP_transferase W2

Protein Analysis

588

Amino Acids

66.52

Weight (kDa)

4.72

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LbH_EIF2B	PF25084	182 - 284	2.3e-39	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	195 - 279	1.7e-10	GMPPB C-terminal domain
Hexapep	PF00132	203 - 236	1e-07	Bacterial transferase hexapeptide (six repeats)
Hexapep_GlmU	PF24894	204 - 267	7.3e-06	GlmU-like, C-terminal hexapeptide
W2	PF02020	509 - 587	5.9e-18	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34970 AT4G18300
fragaria_vesca	FvH4_2g12670 FvH4_2g12670
malus_domestica	MD00G1051200.v1.1 MD12G1232500.v1.1 MD17G1228000.v1.1
prunus_persica	Prupe.6G335900_v2.0.a1
pyrus_communis	pycom04g19200 pycom12g21490
rosa_chinensis	RchiOBHm_Chr2g0129391 RchiOBHm_Chr6g0273391
rosa_laevigata	RLG00000013621 RLG00000019076
rosa_multiflora	Rmu_sc0001171.1_g000012 Rmu_sc0005891.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114650 Rroxscaffold_7G00195420
rosa_rugosa	Rorug06G0074500
rosa_samantha	Rh2AG338500 Rh2BG346600 Rh2CG326000 Rh2DG364400 Rh6AG189600 Rh6BG193000 Rh6CG192800 Rh6DG184300
rosa_wichuraiana	Rw6G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	499, 623
AciI	CCGC	2 cut(s)	425, 1569
AclI	AACGTT	1 cut(s)	693
AclWI	GGATC	3 cut(s)	143, 211, 1175
AcsI	RAATTY	6 cut(s)	408, 648, 655, 954, 1544, 1692
AcuI	CTGAAG	5 cut(s)	318, 427, 1191, 1517, 1764
AfaI	GTAC	1 cut(s)	1377
AfiI	CCNNNNNNNGG	4 cut(s)	199, 633, 1012, 1208
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	3 cut(s)	1010, 1202, 1663
AlwI	GGATC	3 cut(s)	143, 211, 1175
AoxI	GGCC	1 cut(s)	1087
ApeKI	GCWGC	4 cut(s)	163, 744, 1157, 1191
ApoI	RAATTY	6 cut(s)	408, 648, 655, 954, 1544, 1692
AspS9I	GGNCC	3 cut(s)	599, 686, 1453
AsuHPI	GGTGA	4 cut(s)	87, 721, 1042, 1159
AvaII	GGWCC	3 cut(s)	599, 686, 1453
BaeGI	GKGCMC	1 cut(s)	125
BanI	GGYRCC	2 cut(s)	499, 623
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	2 cut(s)	305, 1143
BbvI	GCAGC	4 cut(s)	175, 731, 1144, 1203
BccI	CCATC	5 cut(s)	477, 734, 767, 1181, 1247
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcoDI	GTCTC	3 cut(s)	1010, 1202, 1663
BfaI	CTAG	2 cut(s)	429, 920
BfmI	CTRYAG	3 cut(s)	762, 1128, 1158
BisI	GCNGC	5 cut(s)	164, 426, 745, 1158, 1192
BlsI	GCNGC	5 cut(s)	165, 427, 746, 1159, 1193
Bme18I	GGWCC	3 cut(s)	599, 686, 1453
BmgT120I	GGNCC	3 cut(s)	599, 686, 1453
BmiI	GGNNCC	3 cut(s)	501, 625, 1258
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	1748
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	1193, 1407
Bpu10I	CCTNAGC	4 cut(s)	305, 752, 1143, 1572
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 633, 1012, 1208
Bse1I	ACTGG	3 cut(s)	123, 946, 981
BseGI	GGATG	5 cut(s)	558, 1171, 1309, 1663, 1759
BseLI	CCNNNNNNNGG	4 cut(s)	199, 633, 1012, 1208
BseMII	CTCAG	7 cut(s)	26, 319, 579, 1029, 1134, 1340, 1640
BseNI	ACTGG	3 cut(s)	123, 946, 981
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	4 cut(s)	175, 731, 1144, 1203
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	1089
BshNI	GGYRCC	2 cut(s)	499, 623
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	199, 633, 1012, 1208
BsmAI	GTCTC	3 cut(s)	1010, 1202, 1663
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	1 cut(s)	1089
Bsp1286I	GDGCHC	2 cut(s)	125, 135
Bsp1407I	TGTACA	1 cut(s)	1375
Bsp143I	GATC	5 cut(s)	148, 203, 584, 1168, 1180
BspACI	CCGC	2 cut(s)	425, 1569
BspANI	GGCC	1 cut(s)	1089
BspCNI	CTCAG	7 cut(s)	25, 318, 578, 1030, 1135, 1341, 1641
BspLI	GGNNCC	3 cut(s)	501, 625, 1258
BspMAI	CTGCAG	2 cut(s)	1132, 1162
BspPI	GGATC	3 cut(s)	143, 211, 1175
BspT107I	GGYRCC	2 cut(s)	499, 623
BsrGI	TGTACA	1 cut(s)	1375
BsrI	ACTGG	3 cut(s)	123, 946, 981
BssMI	GATC	5 cut(s)	148, 203, 584, 1168, 1180
Bst4CI	ACNGT	6 cut(s)	84, 610, 1023, 1375, 1382, 1614
Bst6I	CTCTTC	6 cut(s)	1092, 1236, 1518, 1632, 1743, 1755
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	1375
BstC8I	GCNNGC	4 cut(s)	231, 749, 759, 1707
BstF5I	GGATG	5 cut(s)	558, 1171, 1309, 1663, 1759
BstKTI	GATC	5 cut(s)	151, 206, 587, 1171, 1183
BstMAI	GTCTC	3 cut(s)	1010, 1202, 1663
BstMBI	GATC	5 cut(s)	148, 203, 584, 1168, 1180
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	3 cut(s)	761, 974, 1676
BstSFI	CTRYAG	3 cut(s)	762, 1128, 1158
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	175, 731, 1144, 1203
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	3 cut(s)	148, 203, 1180
BstYI	RGATCY	3 cut(s)	148, 203, 1180
BsuRI	GGCC	1 cut(s)	1089
BtsCI	GGATG	5 cut(s)	558, 1171, 1309, 1663, 1759
BtsIMutI	CAGTG	6 cut(s)	123, 939, 974, 1028, 1346, 1378
Cac8I	GCNNGC	4 cut(s)	231, 749, 759, 1707
Cfr13I	GGNCC	3 cut(s)	599, 686, 1453
Csp6I	GTAC	1 cut(s)	1376
CviAII	CATG	6 cut(s)	194, 404, 758, 971, 1091, 1673
CviQI	GTAC	1 cut(s)	1376
DpnI	GATC	5 cut(s)	150, 205, 586, 1170, 1182
DpnII	GATC	5 cut(s)	148, 203, 584, 1168, 1180
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	6 cut(s)	1092, 1236, 1518, 1632, 1743, 1755
EarI	CTCTTC	6 cut(s)	1092, 1236, 1518, 1632, 1743, 1755
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	3 cut(s)	599, 686, 1453
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	5 cut(s)	318, 427, 1191, 1517, 1764
EcoICRI	GAGCTC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	6 cut(s)	197, 407, 761, 974, 1094, 1676
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	6 cut(s)	193, 403, 757, 970, 1090, 1672
Fnu4HI	GCNGC	5 cut(s)	164, 426, 745, 1158, 1192
FokI	GGATG	4 cut(s)	565, 1178, 1316, 1670
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	164, 426, 745, 1158, 1192
FspBI	CTAG	2 cut(s)	429, 920
GluI	GCNGC	5 cut(s)	164, 426, 745, 1158, 1192
GsuI	CTGGAG	2 cut(s)	1193, 1407
HaeIII	GGCC	1 cut(s)	1089
Hin1II	CATG	6 cut(s)	197, 407, 761, 974, 1094, 1676
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HinfI	GANTC	6 cut(s)	524, 806, 1226, 1232, 1565, 1682
HphI	GGTGA	4 cut(s)	87, 721, 1042, 1159
Hpy166II	GTNNAC	3 cut(s)	931, 1342, 1378
Hpy188III	TCNNGA	9 cut(s)	23, 114, 215, 296, 371, 582, 1172, 1184, 1209
Hpy8I	GTNNAC	3 cut(s)	931, 1342, 1378
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4III	ACNGT	6 cut(s)	84, 610, 1023, 1375, 1382, 1614
HpyCH4IV	ACGT	2 cut(s)	343, 693
HpyCH4V	TGCA	8 cut(s)	197, 256, 590, 747, 950, 974, 1130, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	2 cut(s)	343, 693
Hsp92II	CATG	6 cut(s)	197, 407, 761, 974, 1094, 1676
Kzo9I	GATC	5 cut(s)	148, 203, 584, 1168, 1180
LmnI	GCTCC	3 cut(s)	862, 1123, 1388
Lsp1109I	GCAGC	4 cut(s)	175, 731, 1144, 1203
LweI	GCATC	1 cut(s)	1748
MaeI	CTAG	2 cut(s)	429, 920
MaeII	ACGT	2 cut(s)	343, 693
MaeIII	GTNAC	3 cut(s)	386, 727, 1030
MalI	GATC	5 cut(s)	150, 205, 586, 1170, 1182
MboI	GATC	5 cut(s)	148, 203, 584, 1168, 1180
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	3 cut(s)	148, 203, 1180
MhlI	GDGCHC	2 cut(s)	125, 135
MlyI	GAGTC	1 cut(s)	1574
MmeI	TCCRAC	1 cut(s)	910
MseI	TTAA	5 cut(s)	78, 356, 510, 869, 1314
MslI	CAYNNNNRTG	1 cut(s)	1677
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	1108
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	5 cut(s)	148, 203, 584, 1168, 1180
NlaIII	CATG	6 cut(s)	197, 407, 761, 974, 1094, 1676
NlaIV	GGNNCC	3 cut(s)	501, 625, 1258
NmuCI	GTSAC	2 cut(s)	727, 1030
NspI	RCATGY	3 cut(s)	761, 974, 1676
PaeI	GCATGC	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	5 cut(s)	524, 806, 1226, 1232, 1682
PkrI	GCNGC	5 cut(s)	165, 427, 746, 1159, 1193
PleI	GAGTC	1 cut(s)	1573
PpsI	GAGTC	1 cut(s)	1573
Psp124BI	GAGCTC	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	501, 625, 1258
PspPI	GGNCC	3 cut(s)	599, 686, 1453
PstI	CTGCAG	2 cut(s)	1132, 1162
PsuI	RGATCY	3 cut(s)	148, 203, 1180
RsaI	GTAC	1 cut(s)	1377
RsaNI	GTAC	1 cut(s)	1376
RseI	CAYNNNNRTG	1 cut(s)	1677
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	5 cut(s)	78, 356, 510, 869, 1314
SatI	GCNGC	5 cut(s)	164, 426, 745, 1158, 1192
Sau3AI	GATC	5 cut(s)	148, 203, 584, 1168, 1180
Sau96I	GGNCC	3 cut(s)	599, 686, 1453
SchI	GAGTC	1 cut(s)	1574
SduI	GDGCHC	2 cut(s)	125, 135
SfaNI	GCATC	1 cut(s)	1748
SfcI	CTRYAG	3 cut(s)	762, 1128, 1158
SinI	GGWCC	3 cut(s)	599, 686, 1453
SmiMI	CAYNNNNRTG	1 cut(s)	1677
SphI	GCATGC	1 cut(s)	761
SsiI	CCGC	2 cut(s)	425, 1569
SspI	AATATT	2 cut(s)	396, 1312
SspMI	CTAG	2 cut(s)	429, 920
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	6 cut(s)	84, 610, 1023, 1375, 1382, 1614
TaiI	ACGT	2 cut(s)	346, 696
TaqI	TCGA	7 cut(s)	115, 245, 282, 416, 559, 986, 1593
TatI	WGTACW	1 cut(s)	1375
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	5 cut(s)	524, 806, 1226, 1232, 1682
Tru1I	TTAA	5 cut(s)	78, 356, 510, 869, 1314
Tru9I	TTAA	5 cut(s)	78, 356, 510, 869, 1314
TscAI	CASTG	6 cut(s)	130, 946, 981, 1028, 1353, 1385
TseFI	GTSAC	2 cut(s)	727, 1030
TseI	GCWGC	4 cut(s)	163, 744, 1157, 1191
Tsp45I	GTSAC	2 cut(s)	727, 1030
TspRI	CASTG	6 cut(s)	130, 946, 981, 1028, 1353, 1385
VpaK11BI	GGWCC	3 cut(s)	599, 686, 1453
XapI	RAATTY	6 cut(s)	408, 648, 655, 954, 1544, 1692
XceI	RCATGY	3 cut(s)	761, 974, 1676
XspI	CTAG	2 cut(s)	429, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.