Rorug06G0202200

Zeta toxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007046
Physical Location & Seq
Forward (+)
32450639 .. 32454262
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0202200.1

Sequence Viewer

Length: 201 bp
ATGAACGCCGTCGAGCAGTTTTCTGATTTTGAAGTCTCTCGTCGCGAACGAGAGTTGCAGCACATTTTGCGTGTTCTGAACACCAATGTGGATGGAAATCAGAAGATCATGTTCGCTCTGACCTCCATCAAGGGTATCGGTCGCCGTTTAGCCAACATCGTCTGCAAGAAGGCCGATGTCGACATGAACAGGAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zeta_toxin

Protein Analysis

66

Amino Acids

7.7

Weight (kDa)

10.38

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 24 - 65 2.5e-13 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 32
AleI CACNNNNGTG 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 86, 134
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 40
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 96
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 105
Bsp68I TCGCGA 1 cut(s) 45
BspANI GGCC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 45
BssMI GATC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 105
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 97
BtuMI TCGCGA 1 cut(s) 45
CviAII CATG 2 cut(s) 109, 184
CviJI RGCY 2 cut(s) 152, 173
CviKI_1 RGCY 2 cut(s) 152, 173
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
FaeI CATG 2 cut(s) 112, 187
FaiI YATR 2 cut(s) 110, 185
FatI CATG 2 cut(s) 108, 183
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 2 cut(s) 112, 187
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 25, 78, 102, 120
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 14, 45
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 58, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 112, 187
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 70
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 115
MnlI CCTC 2 cut(s) 133, 186
MslI CAYNNNNRTG 1 cut(s) 86
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 112, 187
NruI TCGCGA 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 1 cut(s) 60
RruI TCGCGA 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 86
SalI GTCGAC 1 cut(s) 179
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 105
SetI ASST 1 cut(s) 125
SgeI CNNG 9 cut(s) 25, 51, 56, 62, 83, 121, 142, 178, 196
SmiMI CAYNNNNRTG 1 cut(s) 86
TaqI TCGA 2 cut(s) 12, 180
TaqII GACCGA 1 cut(s) 128
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 17, 200
XmiI GTMKAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.