Rorug06G0415400

Putative sugar-binding N-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
55519446 .. 55522066
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0415400.1

Sequence Viewer

Length: 1263 bp
ATGTCATTGAAAAGCATAATCCGCGATCTCTGGATCATAAGAGATGAGATGAGGAAGAAGCCCAAGGCTGGAGGGGCAGCAGAAGAGAGAAAGCAGATGCGTCGTCGTCGCCGAACCAAAGCATATATTGCACCTGAACAGCCATTTTCATTGCCATCATCAACTGTGCCGCAGAGTCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATAATCCAACGCGTGGAACAAGCCGAGATCTCCTGGCCTGCTCGGAGGGATGTCGTTGCTTGTGCTTCCGTTTGCAGATCATGGAGGGAGATTACAAACGAGATTGTCAAGACTCCGGAGCAATGTGGCTTGCTTACCTTCCCCATCTCACTCAAGCAGCCGGGGCCGAGAGATTCTCTGATCCAGTGCTTTATTCAGAGGGAAAGAGAAACTTCGACATATCGCCTGTTTCTTGGTCTAAGCCCTGCTCTCTCCGGGGACATGAGTAAGCTACTGTTGACAGCCAGGAAAATTAGACGGGCAACAAGTACAGAGTTTGTGATATCCTTGGCTGCAGATGATTTCTCTCGAGCAAGCACTACTTATGTCGGAAAACTAAGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCTCCAATCCAAACAAATCACAAGTCACATAAAAAAATGAATTCAAAGCATGCAATTTCAAGGATACCTGCCGGTAGTTATAATGTTGCTACAGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCATCATGCAATCGATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCCCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGAGTATGATGACATGAGTGACCCACTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACGGTGGCTTCGGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGAGGCTGAACAAGAGAAAGTAATACTGCAATTCGGGAAAATTGGTAAAGACATTTTCACAATGGATTATCGATACCCTCTCTCTACTTTCCAAGCCTTCGCAATTTGCTTGAGCTGCTTTGACACAAAACCAGCCTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

420

Amino Acids

47.4

Weight (kDa)

9.42

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 61 - 105 1.9e-06 F-box-like
Tub PF01167 122 - 415 1.3e-102 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
Acc36I ACCTGC 1 cut(s) 724
AccB7I CCANNNNNTGG 2 cut(s) 226, 1087
AccII CGCG 2 cut(s) 24, 225
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 2 cut(s) 22, 170
AclWI GGATC 6 cut(s) 41, 388, 603, 616, 802, 960
AcsI RAATTY 3 cut(s) 688, 1039, 1075
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 6 cut(s) 68, 226, 644, 949, 1057, 1087
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 10, 693, 708, 991
AjnI CCWGG 2 cut(s) 245, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 7 cut(s) 484, 754, 916, 933, 1001, 1021, 1233
AluI AGCT 7 cut(s) 484, 754, 916, 933, 1001, 1021, 1233
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 1 cut(s) 1120
AlwI GGATC 6 cut(s) 41, 388, 603, 616, 802, 960
AlwNI CAGNNNCTG 1 cut(s) 1124
Ama87I CYCGRG 1 cut(s) 561
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 3 cut(s) 248, 377, 1048
ApeKI GCWGC 9 cut(s) 77, 370, 545, 916, 1018, 1021, 1091, 1094, 1233
ApoI RAATTY 3 cut(s) 688, 1039, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 3 cut(s) 377, 776, 1048
AsuC2I CCSGG 2 cut(s) 375, 469
AsuII TTCGAA 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 9 cut(s) 89, 382, 532, 903, 1008, 1030, 1078, 1081, 1220
BccI CCATC 4 cut(s) 163, 365, 821, 1002
BceAI ACGGC 1 cut(s) 1035
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 247, 499
BciVI GTATCC 1 cut(s) 705
BcnI CCSGG 2 cut(s) 375, 469
BcoDI GTCTC 1 cut(s) 1120
BfaI CTAG 1 cut(s) 1005
BfmI CTRYAG 4 cut(s) 546, 738, 1022, 1095
BfuAI ACCTGC 1 cut(s) 724
BfuI GTATCC 1 cut(s) 705
BglII AGATCT 1 cut(s) 240
Bme1390I CCNGG 4 cut(s) 247, 375, 469, 499
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 3 cut(s) 377, 776, 1048
BmiI GGNNCC 4 cut(s) 378, 610, 777, 1049
BmrFI CCNGG 4 cut(s) 247, 375, 469, 499
BmsI GCATC 2 cut(s) 87, 804
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpmI CTGGAG 2 cut(s) 90, 977
Bpu14I TTCGAA 1 cut(s) 766
BpuEI CTTGAG 2 cut(s) 350, 1249
BpuMI CCSGG 2 cut(s) 375, 469
Bsa29I ATCGAT 2 cut(s) 806, 1189
BsaBI GATNNNNATC 1 cut(s) 812
BsaJI CCNNGG 4 cut(s) 63, 374, 468, 540
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 226, 644, 949, 1057, 1087
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 3 cut(s) 397, 896, 954
Bse3DI GCAATG 2 cut(s) 149, 341
Bse8I GATNNNNATC 1 cut(s) 812
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 247, 499
BseCI ATCGAT 2 cut(s) 806, 1189
BseDI CCNNGG 4 cut(s) 63, 374, 468, 540
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 812
BseLI CCNNNNNNNGG 6 cut(s) 68, 226, 644, 949, 1057, 1087
BseMI GCAATG 2 cut(s) 149, 341
BseMII CTCAG 3 cut(s) 189, 831, 1131
BseNI ACTGG 3 cut(s) 397, 896, 954
BseXI GCAGC 9 cut(s) 89, 382, 532, 903, 1008, 1030, 1078, 1081, 1220
Bsh1236I CGCG 2 cut(s) 24, 225
BshFI GGCC 3 cut(s) 250, 379, 1050
BshVI ATCGAT 2 cut(s) 806, 1189
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 4 cut(s) 329, 374, 468, 720
BslFI GGGAC 2 cut(s) 485, 789
BslI CCNNNNNNNGG 6 cut(s) 68, 226, 644, 949, 1057, 1087
BsmAI GTCTC 1 cut(s) 1120
BsmFI GGGAC 2 cut(s) 485, 789
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 3 cut(s) 250, 379, 1050
BsoBI CYCGRG 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 1 cut(s) 756
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
BspACI CCGC 2 cut(s) 22, 170
BspANI GGCC 3 cut(s) 250, 379, 1050
BspCNI CTCAG 3 cut(s) 190, 830, 1130
BspDI ATCGAT 2 cut(s) 806, 1189
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 2 cut(s) 24, 225
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 378, 610, 777, 1049
BspMAI CTGCAG 3 cut(s) 550, 1026, 1099
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 6 cut(s) 41, 388, 603, 616, 802, 960
BspT104I TTCGAA 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 149, 341
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 3 cut(s) 397, 896, 954
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 4 cut(s) 63, 374, 468, 540
BssMI GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
BssT1I CCWWGG 2 cut(s) 63, 540
Bst2UI CCWGG 2 cut(s) 247, 499
Bst4CI ACNGT 4 cut(s) 166, 489, 742, 1060
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 4 cut(s) 252, 344, 568, 699
BstDEI CTNAG 5 cut(s) 198, 452, 590, 817, 1117
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 24, 225
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 8 cut(s) 28, 36, 243, 293, 396, 611, 810, 955
BstMAI GTCTC 1 cut(s) 1120
BstMBI GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
BstMWI GCNNNNNNNGC 7 cut(s) 21, 74, 128, 376, 939, 1018, 1233
BstNI CCWGG 2 cut(s) 247, 499
BstNSI RCATGY 2 cut(s) 193, 701
BstSCI CCNGG 4 cut(s) 245, 373, 467, 497
BstSFI CTRYAG 4 cut(s) 546, 738, 1022, 1095
BstUI CGCG 2 cut(s) 24, 225
BstV1I GCAGC 9 cut(s) 89, 382, 532, 903, 1008, 1030, 1078, 1081, 1220
BstX2I RGATCY 3 cut(s) 240, 608, 952
BstYI RGATCY 3 cut(s) 240, 608, 952
Bsu15I ATCGAT 2 cut(s) 806, 1189
BsuI GTATCC 1 cut(s) 705
BsuRI GGCC 3 cut(s) 250, 379, 1050
BsuTUI ATCGAT 2 cut(s) 806, 1189
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 797, 1031
BtsIMutI CAGTG 3 cut(s) 404, 797, 1031
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 4 cut(s) 252, 344, 568, 699
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 844
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 377, 776, 1048
ClaI ATCGAT 2 cut(s) 806, 1189
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 522
CspCI CAANNNNNGTGG 2 cut(s) 969, 1004
CviAII CATG 9 cut(s) 190, 209, 294, 475, 644, 698, 799, 970, 1013
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 5 cut(s) 198, 452, 590, 817, 1117
DpnI GATC 8 cut(s) 27, 35, 242, 292, 395, 610, 809, 954
DpnII GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
DraI TTTAAA 1 cut(s) 861
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 754
Eco130I CCWWGG 2 cut(s) 63, 540
Eco24I GRGCYC 1 cut(s) 756
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 245, 497
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 63, 540
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 2 cut(s) 63, 540
FaeI CATG 9 cut(s) 193, 212, 297, 478, 647, 701, 802, 973, 1016
FalI AAGNNNNNCTT 4 cut(s) 409, 441, 559, 591
FaqI GGGAC 2 cut(s) 485, 789
FatI CATG 9 cut(s) 189, 208, 293, 474, 643, 697, 798, 969, 1012
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 756
FspBI CTAG 1 cut(s) 1005
GlaI GCGC 1 cut(s) 843
GsuI CTGGAG 2 cut(s) 90, 977
HaeIII GGCC 3 cut(s) 250, 379, 1050
HapII CCGG 4 cut(s) 329, 374, 468, 720
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 844
Hin1II CATG 9 cut(s) 193, 212, 297, 478, 647, 701, 802, 973, 1016
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 175, 325, 386
HpaII CCGG 4 cut(s) 329, 374, 468, 720
Hpy166II GTNNAC 2 cut(s) 492, 618
Hpy188I TCNGA 5 cut(s) 258, 393, 411, 584, 1120
Hpy188III TCNNGA 9 cut(s) 31, 197, 209, 322, 329, 561, 827, 956, 1153
Hpy8I GTNNAC 2 cut(s) 492, 618
Hpy99I CGWCG 3 cut(s) 105, 108, 111
HpyAV CCTTC 5 cut(s) 361, 773, 824, 1113, 1225
HpyCH4III ACNGT 4 cut(s) 166, 489, 742, 1060
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 74, 128, 376, 939, 1018, 1233
HpyF3I CTNAG 5 cut(s) 198, 452, 590, 817, 1117
Hsp92II CATG 9 cut(s) 193, 212, 297, 478, 647, 701, 802, 973, 1016
HspAI GCGC 1 cut(s) 842
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
LmnI GCTCC 2 cut(s) 331, 1006
Lsp1109I GCAGC 9 cut(s) 89, 382, 532, 903, 1008, 1030, 1078, 1081, 1220
LweI GCATC 2 cut(s) 87, 804
MaeI CTAG 1 cut(s) 1005
MaeIII GTNAC 3 cut(s) 672, 974, 1054
MalI GATC 8 cut(s) 27, 35, 242, 292, 395, 610, 809, 954
MboI GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
MboII GAAGA 3 cut(s) 67, 95, 795
MfeI CAATTG 1 cut(s) 1082
MflI RGATCY 3 cut(s) 240, 608, 952
MhlI GDGCHC 1 cut(s) 756
MluI ACGCGT 1 cut(s) 223
MlyI GAGTC 2 cut(s) 184, 319
MmeI TCCRAC 3 cut(s) 244, 562, 875
MroI TCCGGA 1 cut(s) 328
MseI TTAA 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 1021
MspI CCGG 4 cut(s) 329, 374, 468, 720
MspR9I CCNGG 4 cut(s) 247, 375, 469, 499
MunI CAATTG 1 cut(s) 1082
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 2 cut(s) 247, 499
MvnI CGCG 2 cut(s) 24, 225
MwoI GCNNNNNNNGC 7 cut(s) 21, 74, 128, 376, 939, 1018, 1233
NciI CCSGG 2 cut(s) 375, 469
NdeII GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
NlaIII CATG 9 cut(s) 193, 212, 297, 478, 647, 701, 802, 973, 1016
NlaIV GGNNCC 4 cut(s) 378, 610, 777, 1049
NmeAIII GCCGAG 2 cut(s) 262, 405
NmuCI GTSAC 2 cut(s) 672, 974
NspI RCATGY 2 cut(s) 193, 701
NspV TTCGAA 1 cut(s) 766
PaeI GCATGC 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 561
PagI TCATGA 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PctI GAATGC 1 cut(s) 792
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 2 cut(s) 226, 1087
PleI GAGTC 2 cut(s) 183, 319
PpsI GAGTC 2 cut(s) 183, 319
PsiI TTATAA 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 245, 497
PspGI CCWGG 2 cut(s) 245, 497
PspN4I GGNNCC 4 cut(s) 378, 610, 777, 1049
PspPI GGNCC 3 cut(s) 377, 776, 1048
PstI CTGCAG 3 cut(s) 550, 1026, 1099
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 240, 608, 952
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
SacI GAGCTC 1 cut(s) 756
SaqAI TTAA 1 cut(s) 860
Sau3AI GATC 8 cut(s) 25, 33, 240, 290, 393, 608, 807, 952
Sau96I GGNCC 3 cut(s) 377, 776, 1048
SchI GAGTC 2 cut(s) 184, 319
ScrFI CCNGG 4 cut(s) 247, 375, 469, 499
SduI GDGCHC 1 cut(s) 756
SfaNI GCATC 2 cut(s) 87, 804
SfcI CTRYAG 4 cut(s) 546, 738, 1022, 1095
Sfr274I CTCGAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 766
SinI GGWCC 1 cut(s) 776
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 3 cut(s) 365, 561, 1228
SmoI CTYRAG 3 cut(s) 365, 561, 1228
SphI GCATGC 1 cut(s) 701
SsiI CCGC 2 cut(s) 22, 170
SspMI CTAG 1 cut(s) 1005
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 4 cut(s) 245, 373, 467, 497
StyI CCWWGG 2 cut(s) 63, 540
TaaI ACNGT 4 cut(s) 166, 489, 742, 1060
TaqI TCGA 5 cut(s) 428, 562, 766, 806, 1189
TatI WGTACW 1 cut(s) 521
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TscAI CASTG 3 cut(s) 404, 797, 1031
TseFI GTSAC 2 cut(s) 672, 974
TseI GCWGC 9 cut(s) 77, 370, 545, 916, 1018, 1021, 1091, 1094, 1233
Tsp45I GTSAC 2 cut(s) 672, 974
TspDTI ATGAA 3 cut(s) 138, 197, 701
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 3 cut(s) 404, 797, 1031
Van91I CCANNNNNTGG 2 cut(s) 226, 1087
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 3 cut(s) 688, 1039, 1075
XceI RCATGY 2 cut(s) 193, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 561
XspI CTAG 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.