Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006366

Physical Location & Seq

Genomic Coordinates Forward (+)

32103135 .. 32106048

Gene Structure 2914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTGAAGCGGATTGGATTCATTGGTCTTGGAGCAATGGGATTCGGCATGGCAACTCAACTTCTAAAATCAAACTTTTGTGTTCTTGGTTATGATGTATATAAACCGACACTAACGCGATTTGCCAATGCTGGTGGCTTGATTGGAAGCTCTCCAGCAGAAGTATATGTTGATGTTTTGGTAATTATGGTCACAAATGAAGCTCAAGCTGAGAGCGCTTTATTTGGAGATTTTGGTGCTATTTTAGCACTTCCATCTGGAGCTTCTATTATCCTTTCATCCACTGTTTCTCCTGGATTTGTGAGCCGACTAGATCAACGCTTACAAAATGAAGGAAAGGATCTGAAGTTGGTGGATGCTCCTGTTTCTGGTGGTGTTGTGAGAGCCGGCAATGGGACACTTACGATCATGGCATCTGGCACAGATGAAGCTCTTAAGAGTACTGGTTCAGTCCTCTCAGCATTAAGCGAGAAGCTTTATATTATCAAAGGAGGCTGTGGAGCTGGAAGGATGGTTAATCAATTGCTAGCTGGAGTTCATATAGCATCGGGAGCTGAGGCAATGGCGTTTGGAGCTCGGTTGGGTCTTAATACAAGGATGTTATTTGATTTCATCACAAATAGTGAGGGATCATCCTGGATGTTTGAAAATCGTGTTCCACACATGCTGGACAATGATTATACACCACTTTCTGCGCTTGATATCTTTGTGAAAGATTTGTTGTTAGCATGCTCATGGAAACTAACACTTGATATAACTGTCTGGCAAGTTCTGCTGAATGGTGGCTTAAGTGTGCATGATATTGAGGTCTTAACTGAATGGGCAATGAGCTCTGACAAGGCCACCACACTAATCAAAGACATCTGCACAAACTTGCATACTGCAGCCAAATCAGTTCAGGATGCTGATTATACTATAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1357_C DUF1537 F_bP_aldolase NAD_binding_11 NAD_binding_2

Protein Analysis

307

Amino Acids

32.54

Weight (kDa)

5.1

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	4 - 160	3.1e-33	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	170 - 245	1.2e-18	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18270 AT1G18270 AT1G18270 AT1G18270
fragaria_vesca	FvH4_5g17450 FvH4_5g17450 FvH4_5g17450 FvH4_5g17450 FvH4_5g17450 FvH4_5g17450 FvH4_5g17450
malus_domestica	MD14G1237000.v1.1
prunus_persica	Prupe.5G234300_v2.0.a1
pyrus_communis	pycom14g19800
rosa_chinensis	RchiOBHm_Chr7g0178241
rosa_laevigata	RLG00000005461
rosa_multiflora	Rmu_co8179448.1_g000001 Rmu_sc0007855.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275050
rosa_rugosa	Rorug06G0415300 Rorug06G0415400
rosa_samantha	Rh7AG014400 Rh7BG013900 Rh7CG013800 Rh7DG014100
rosa_wichuraiana	Rw6G016340 Rw7G001130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	348, 637
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	442
AfeI	AGCGCT	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	368, 393
AflII	CTTAAG	2 cut(s)	434, 787
AgsI	TTSAA	1 cut(s)	647
AjnI	CCWGG	2 cut(s)	292, 635
Alw21I	GWGCWC	2 cut(s)	577, 833
AlwI	GGATC	2 cut(s)	348, 637
Aor51HI	AGCGCT	1 cut(s)	217
AoxI	GGCC	1 cut(s)	840
ApeKI	GCWGC	1 cut(s)	884
AspLEI	GCGC	2 cut(s)	218, 697
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	577, 833
Bbv12I	GWGCWC	2 cut(s)	577, 833
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	896
BccI	CCATC	2 cut(s)	262, 505
BciT130I	CCWGG	2 cut(s)	294, 637
BfaI	CTAG	3 cut(s)	311, 527, 922
BfmI	CTRYAG	2 cut(s)	882, 915
BfoI	RGCGCY	1 cut(s)	219
BfrI	CTTAAG	2 cut(s)	434, 787
BisI	GCNGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	886
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	294, 637
BmrFI	CCNGG	2 cut(s)	294, 637
BmsI	GCATC	4 cut(s)	346, 422, 554, 892
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	3 cut(s)	138, 279, 552
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 393
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	4 cut(s)	42, 397, 567, 831
BseBI	CCWGG	2 cut(s)	294, 637
BseGI	GGATG	7 cut(s)	278, 361, 516, 603, 632, 645, 907
BseLI	CCNNNNNNNGG	2 cut(s)	368, 393
BseMI	GCAATG	4 cut(s)	42, 397, 567, 831
BseMII	CTCAG	3 cut(s)	201, 471, 546
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	896
BsgI	GTGCAG	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	842
BsiHKAI	GWGCWC	2 cut(s)	577, 833
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	368, 393
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	842
Bsp1286I	GDGCHC	2 cut(s)	577, 833
Bsp143I	GATC	4 cut(s)	313, 340, 405, 629
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	842
BspCNI	CTCAG	3 cut(s)	202, 470, 547
BspFNI	CGCG	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	886
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	348, 637
BspTI	CTTAAG	2 cut(s)	434, 787
BsrDI	GCAATG	4 cut(s)	42, 397, 567, 831
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	386
BssMI	GATC	4 cut(s)	313, 340, 405, 629
Bst2UI	CCWGG	2 cut(s)	294, 637
Bst4CI	ACNGT	2 cut(s)	286, 760
BstAFI	CTTAAG	2 cut(s)	434, 787
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	388, 528, 730
BstDEI	CTNAG	3 cut(s)	210, 457, 555
BstF5I	GGATG	7 cut(s)	278, 361, 516, 603, 632, 645, 907
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 697
BstKTI	GATC	4 cut(s)	316, 343, 408, 632
BstMBI	GATC	4 cut(s)	313, 340, 405, 629
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 245, 551, 572, 772
BstNI	CCWGG	2 cut(s)	294, 637
BstNSI	RCATGY	2 cut(s)	667, 732
BstSCI	CCNGG	2 cut(s)	292, 635
BstSFI	CTRYAG	2 cut(s)	882, 915
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	896
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	842
BtsCI	GGATG	7 cut(s)	278, 361, 516, 603, 632, 645, 907
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	388, 528, 730
CfoI	GCGC	2 cut(s)	218, 697
Cfr10I	RCCGGY	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	6 cut(s)	49, 409, 664, 729, 735, 797
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	3 cut(s)	210, 457, 555
DpnI	GATC	4 cut(s)	315, 342, 407, 631
DpnII	GATC	4 cut(s)	313, 340, 405, 629
Ecl136II	GAGCTC	2 cut(s)	575, 831
Eco24I	GRGCYC	2 cut(s)	577, 833
Eco32I	GATATC	1 cut(s)	703
Eco47III	AGCGCT	1 cut(s)	217
Eco53kI	GAGCTC	2 cut(s)	575, 831
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	2 cut(s)	575, 831
EcoRII	CCWGG	2 cut(s)	292, 635
EcoRV	GATATC	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	577, 833
FaeI	CATG	6 cut(s)	52, 412, 667, 732, 738, 800
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	6 cut(s)	48, 408, 663, 728, 734, 796
Fnu4HI	GCNGC	1 cut(s)	885
FokI	GGATG	7 cut(s)	265, 368, 523, 610, 619, 652, 914
FriOI	GRGCYC	2 cut(s)	577, 833
Fsp4HI	GCNGC	1 cut(s)	885
FspBI	CTAG	3 cut(s)	311, 527, 922
GlaI	GCGC	2 cut(s)	217, 696
GluI	GCNGC	1 cut(s)	885
GsuI	CTGGAG	3 cut(s)	138, 279, 552
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	1 cut(s)	387
HhaI	GCGC	2 cut(s)	218, 697
Hin1II	CATG	6 cut(s)	52, 412, 667, 732, 738, 800
Hin6I	GCGC	2 cut(s)	216, 695
HinP1I	GCGC	2 cut(s)	216, 695
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	18, 42
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	345, 835
Hpy188III	TCNNGA	3 cut(s)	258, 549, 899
HpyAV	CCTTC	2 cut(s)	326, 501
HpyCH4III	ACNGT	2 cut(s)	286, 760
HpyCH4V	TGCA	4 cut(s)	796, 867, 877, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 245, 551, 572, 772
HpyF3I	CTNAG	3 cut(s)	210, 457, 555
Hsp92II	CATG	6 cut(s)	52, 412, 667, 732, 738, 800
HspAI	GCGC	2 cut(s)	216, 695
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	313, 340, 405, 629
LmnI	GCTCC	6 cut(s)	32, 260, 364, 500, 551, 572
Lsp1109I	GCAGC	1 cut(s)	896
LweI	GCATC	4 cut(s)	346, 422, 554, 892
MaeI	CTAG	3 cut(s)	311, 527, 922
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	315, 342, 407, 631
MboI	GATC	4 cut(s)	313, 340, 405, 629
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	577, 833
MluCI	AATT	2 cut(s)	183, 521
MnlI	CCTC	5 cut(s)	464, 485, 550, 619, 799
MroNI	GCCGGC	1 cut(s)	386
MseI	TTAA	6 cut(s)	435, 464, 516, 588, 788, 812
MslI	CAYNNNNRTG	1 cut(s)	733
MspCI	CTTAAG	2 cut(s)	434, 787
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	294, 637
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	294, 637
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	5 cut(s)	215, 245, 551, 572, 772
NaeI	GCCGGC	1 cut(s)	388
NdeII	GATC	4 cut(s)	313, 340, 405, 629
NgoMIV	GCCGGC	1 cut(s)	386
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	6 cut(s)	52, 412, 667, 732, 738, 800
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	2 cut(s)	667, 732
PaeI	GCATGC	1 cut(s)	732
PdiI	GCCGGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	18, 42
PfoI	TCCNGGA	2 cut(s)	292, 635
PkrI	GCNGC	1 cut(s)	886
Psp124BI	GAGCTC	2 cut(s)	577, 833
Psp6I	CCWGG	2 cut(s)	292, 635
PspGI	CCWGG	2 cut(s)	292, 635
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	733
SacI	GAGCTC	2 cut(s)	577, 833
SaqAI	TTAA	6 cut(s)	435, 464, 516, 588, 788, 812
SatI	GCNGC	1 cut(s)	885
Sau3AI	GATC	4 cut(s)	313, 340, 405, 629
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	294, 637
SduI	GDGCHC	2 cut(s)	577, 833
SfaNI	GCATC	4 cut(s)	346, 422, 554, 892
SfcI	CTRYAG	2 cut(s)	882, 915
SmiMI	CAYNNNNRTG	1 cut(s)	733
SmlI	CTYRAG	3 cut(s)	204, 434, 787
SmoI	CTYRAG	3 cut(s)	204, 434, 787
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	2 cut(s)	183, 521
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	311, 527, 922
SstI	GAGCTC	2 cut(s)	577, 833
StyD4I	CCNGG	2 cut(s)	292, 635
TaaI	ACNGT	2 cut(s)	286, 760
TasI	AATT	2 cut(s)	183, 521
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	18, 42
Tru1I	TTAA	6 cut(s)	435, 464, 516, 588, 788, 812
Tru9I	TTAA	6 cut(s)	435, 464, 516, 588, 788, 812
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	884
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	7 cut(s)	10, 213, 267, 345, 441, 527, 601
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	2 cut(s)	434, 787
XceI	RCATGY	2 cut(s)	667, 732
XspI	CTAG	3 cut(s)	311, 527, 922
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.