Rh7AG014400

Putative sugar-binding N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006366
Physical Location & Seq
Forward (+)
931577 .. 944459
12883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG014400.1

Sequence Viewer

Length: 4116 bp
ATGGCGTTTCATGGTGTTGTTGGGTTTGTGGGATTGGATGACTTGAGCTTGGACTTGGCTTCTTCACTTCTCCGCAGCGGTTACAGAGTTCAAGCATTTGAGACATATGAACCTTTGATAAATGAGTTTTTAAAGCTAGGGGGAACAAGATGTAGCAGCCCAAAGGAGGCAGGAAAAGATGTTTCAGCTTTGGTTCTGTTAACTTCTCAGGCAGATCAAATTAATGATGCCACGTCAGGATTGCAGAACGATACTGTTCTCATTTTTAATTCAACAATGTTACCGTTGTACATTAAGAATTTGCAGACGTGTTTCACTGCTGATTATAAGCCAGCTTATGTTGTAGATGTATATGCCATGAAGGCAGTATCTGATAGTTTAAATGGAAAAATCATGATTGCTTCTTCAGGAAGTTCAAATGCCATTTTAAAGGCACGACCAGTTCTCTCTGCAATGTGTGAAAAGCTTTATGTTTTTGAGGGTGAAGTTGGTGCTGGAAGCAAAATTAAGATGGTTAAGGAACTACTTGAGGGTATTCATCTTGTTGCATCTTTGGAAGCTATTTCTCTTGGTACCAAAGCTGGTATTCATCCGTGGATAATCTATGATATCATATCTAATGCGGCCGGAAACTCATGGGTTTTTAAGAACCAGGTGCCCCAGCTGTTAGAGCACTCAAAGGGTGCTCCTAAAGATCATTTACGGGACACTCTGGTTCAAAAATTGGGGGTTATATTGAATCTTGCCAAATCGCTTACTTTCCCTCTGCCACTTTTAGCAGTAGCTCACCAACATCTTATTCTTGGGTCTTCAGATGGTAACACAGATGATCAAGATGCCACATTGATTAAGGTTTGGGAAAAGAAACTTGGAGTAAAAATTTCAGATGCAGCAAATGCTGAGACTTACATCCCTGAGCAATTGGCGAGCCATATTGTTGCTAAATCAGATATGGTGAAGCGGATTGGATTCATTGGTCTTGGAGCAATGGGATTCGGCATGGCAACTCAACTTCTAAAATCAAACTTTTGTGTTCTTGGTTATGATGTATATAAACCGACACTAACGCGATTTGCCAATGCTGGTGGCTTGATTGGAAGCTCTCCAGCAGAAGTATGTAAAGATGTTGATGTTCTGGTAATAATGGTCACAAATGAAGCTCAAGCTGAGAGCGCTTTATTTGGAGATTTTGGTGCTATTTCAGCACTTCCATCTGGAGCTTCTATTATCCTTTCATCCACTGTTTCTCCTGGATTTGTGAGCCGACTAGATCAACGCTTACAAAATGAAGGAAAGGATCTGAAGTTGGTGGATGCTCCTGTTTCTGGTGGTGTTGTGAGAGCCGGCAATGGGACACTTACGATCATGGCATCTGGCACAGATGAAGCTCTTAAGAGTGCTGGTTCAGTCCTCTCAGCATTAAGCGAGAGGCTTTATATTATCAAAGGAGGCTGTGGAGCTGGAAGTGGTGTAAAGATGGTTAATCAATTGCTAGCTGGAGTTCATATAGCATCGGGAGCTGAGGCAATGGCGTTTGGAGCTCGGTTGGGTCTTAATACAAGGATGTTATTTGATTTCATCACAAATAGTGAGGGATCATCCTGGATGTTTGAAAATCGTGTTCCACACATGCTGGACAATGATTATACACCACTTTCTGCGCTTGATATCTTTGTGAAAGATTTGGGAATTGTTACTCACGAATGTTCAATTCGAAAGGTTCCACTTCATGTATCGACTATTGCTCATCAACTATTCCTATCAGGTTCTGCTGCAGGCTGGGGTCGACAAGATGATGCTGGTGTGGTTAAGGTTTATGAGACACTCACAGGCGTTAAGGTAGAAGGAAAACTTCCGGCTGTTAAGAAAGACTTTGTATTGCAATCTCTCCCAGCTGAATGGCCATTAGATCCTATAGGTGAAATACAGAAACTAAATCAGGACACATCAAAGACTTTGGTTGTTCTTGATGATGATCCGACTGGAACTCAAACTGTGCATGATATTGAGGTCTTAACTGAATGGACTGTTGAATCACTAATTGAGCAGTTCAGAAAAAGCCCGAAATGCTTTTTCATTTTGACCAACTCCAGGGCAATGAGCTCTGACAAGGCCACCACATTAATCAAAGACATCTGCACAAACTTGCATACTGCAGCCAAATCAGTTCAGGACGCTGATTATACTGTAGTTTTGAGAGGTGATTCGACTTTGCGTGGTCATTTCCCAGAGGCAACTGATGCTGCTGTTTCAGTATTGGGTGAGATGGATGCATGGATCATCTGCCCCTTTTTTCTTCAAGGAGGGCGTTATACCATCGGAGATATACATTATGTGGCTGATACTGATCAGCTTATCCCTGCAGCAGATACAGGATTCGCTAAAGATGCTGCTTTTGGCTACAAATCTTCGAATCTTCGCGAGTGGGTTGAGGAGAAAACAGCTGGTCGCATACCAGCCAGCAGTGTCGCATCCATTTCTATTCAACTGCTGAGAGAAGGTGGGCCAGATGTTGTTTGTGAGCATCTTTGCAGTTTGCAGAAGGGATCAACATGCATAGTTAATGCTGCTAGCGAAAGAGATATGGCTGTTTTTGCAGCTGGAATGATCAAGGCACAACTGAAAGGCAAGCAATTCTTATGCCGCACTGCTGCTAGTTTTGTTTCTGCAAGGATTGGAATTATTCCCAAAGCTCCAATTTTGCCCAAGGATCTAGGAATAAACAAGGAACGGAATGGTGGTCTCATAGTTGTTGGATCATATGTTTCAAAGACGACAAAACAGGTAGAAGAGCTTAAGTTACAATGTGGCCAGATTCTGAGAAGCATTGAGGTTTCGGTTGCTAAAGTTGCAATGAGGTCTGCAGAAGAGAGGGAGCAGGAAATCAGTACAGCAGCTGAGATGGCTGATATTTTTCTTGCAGCTCAGAATGACACACTAATAGTAACCAGTCGGGAGCTTATTACCGGCAAAAGTCCCTCTGAGAGTTTGGAAATCAACTTCAAAGTTAGCTCTGCACTGGTGGAAATAGTTAGGCGAATAACTAAAAGACCTCGTTACATCCTTGCAAAGGGTGGAATCACATCTTCTGACCTTGCTACTAAAGCCCTTGAAGCAAAATGTGCTAAAATAGTGGGACAAGCCTTGCCTGGTGTTCCCTTATGGCAGTTGGGTCCTGAAAGTAGGCATCTGGGAGTTCCATACATTGTTTTTCCTGGTAATGTTGGTGACAGTGGAGCATTGGCCGAGCTAGTGAAATCCTGGGCTCGTCCAATCAGATTTTCAACGAAAGAGCTTCTTCTGAACGCAGAAAAGGGTGGATATGCTGTTGGAGCATTCAATGTTTATAATTTAGAAGGAGTAGAGGCAGTTGTTGCTGCAGCAGAGGAACAACAGAGTCCTGCCATATTACAGATCCATCCCGGTGCCTTGAAGCAAGGAGGCATGCCGTTGATTGCTTGTTGCATCTCTGCTGCTGAACAAGCCAGTGTACCCATAGCTGTACACTTTGATCATGGAACTTCAAAGCAAGATCTGGTGACAGCTCTTGAGTTGGGATTTGATTCTGTCATGGTAGATGGTTCACATCTTTCCTTTACAGAAAATGTTTCGTACACTAGGTTCATAACATTCTTGGCTCACTCAAAAGGCTTGCTAGTAGAAGCTGAACTAGGGAGATTGTCAGGGACAGAAGATGATTTGACTGTTGAAGATTATGAAGCAAGGCTGACCGATGTTAAGCAGGCTCAAGAGTTCATCGATGAAACTGGTATAGATGCTTTGGCAGTGTGTATCGGAAATGTCCATGGTAAATACCCTGCAAGTGGTCCAAATCTGAGACTTGACTTGCTCAAGGAATTGCACGCGTTGAGTTCAAAGAAAGGAGTCTTTCTGGTGCTTCATGGAGCTTCTGGTGTGCCCAAGGAACTTGTAAAGGGATGCATAGAGCTAGGTGTAAGAAAGTTCAATGTAAATACCGAGGTACGGAAAGCTTATATGGATTCCCTTAGCAACTCAAAGAAAGATCTGGTCCATGTTATGGAGTCAGCAAAACTAGCCATGAAAGCAGTGATTGCAGAGAAGATGATTCTATTTGGCTCAGCAGGAAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1357_C DUF1537 F_bP_aldolase NAD_binding_11 NAD_binding_2

Protein Analysis

1371

Amino Acids

146.78

Weight (kDa)

5.94

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_2 PF03446 7 - 157 4.5e-07 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11 PF14833 164 - 285 6.7e-18 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
NAD_binding_2 PF03446 321 - 479 4.6e-36 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11 PF14833 486 - 606 8.8e-29 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
SBD_N PF07005 653 - 890 6.1e-57 Sugar-binding N-terminal domain
NBD_C PF17042 915 - 1081 1e-33 Nucleotide-binding C-terminal domain
F_bP_aldolase PF01116 1095 - 1370 2.8e-92 Fructose-bisphosphate aldolase class-II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 327, 3348
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 3 cut(s) 572, 655, 3425
AccB7I CCANNNNNTGG 1 cut(s) 4039
AccI GTMKAC 1 cut(s) 1786
AccII CGCG 3 cut(s) 1069, 2421, 3866
AciI CCGC 5 cut(s) 73, 78, 623, 961, 2644
AclWI GGATC 9 cut(s) 1305, 1603, 1904, 1970, 2285, 2554, 2718, 2764, 3409
AcoI YGGCCR 4 cut(s) 624, 1901, 2809, 3243
AcsI RAATTY 2 cut(s) 298, 879
AcuI CTGAAG 3 cut(s) 390, 795, 1322
AfaI GTAC 7 cut(s) 290, 574, 2890, 3492, 3504, 3614, 3984
AfeI AGCGCT 1 cut(s) 1174
AfiI CCNNNNNNNGG 8 cut(s) 166, 1325, 1350, 2091, 3070, 3824, 3984, 4039
AflII CTTAAG 2 cut(s) 1391, 2795
AflIII ACRYGT 2 cut(s) 308, 3864
AjiI CACGTC 2 cut(s) 234, 309
AjnI CCWGG 7 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260
AjuI GAANNNNNNNTTGG 6 cut(s) 783, 815, 852, 884, 3265, 3297
Alw21I GWGCWC 4 cut(s) 675, 688, 1543, 2105
Alw26I GTCTC 5 cut(s) 95, 896, 1814, 2747, 3832
AlwI GGATC 9 cut(s) 1305, 1603, 1904, 1970, 2285, 2554, 2718, 2764, 3409
AlwNI CAGNNNCTG 4 cut(s) 371, 1769, 2818, 2897
Aor51HI AGCGCT 1 cut(s) 1174
AoxI GGCC 6 cut(s) 624, 1901, 2112, 2504, 2809, 3243
ApoI RAATTY 2 cut(s) 298, 879
AseI ATTAAT 2 cut(s) 222, 2123
Asp718I GGTACC 1 cut(s) 572
AspLEI GCGC 2 cut(s) 1175, 1663
AspS9I GGNCC 4 cut(s) 2504, 3173, 3827, 4030
AsuC2I CCSGG 1 cut(s) 3423
AsuHPI GGTGA 8 cut(s) 494, 779, 967, 1931, 2213, 2273, 3239, 3550
AsuII TTCGAA 2 cut(s) 1714, 2411
AsuNHI GCTAGC 2 cut(s) 1492, 2570
AvaII GGWCC 3 cut(s) 3173, 3827, 4030
BaeGI GKGCMC 2 cut(s) 660, 3921
BalI TGGCCA 2 cut(s) 1903, 2811
BanI GGYRCC 3 cut(s) 572, 655, 3425
BanII GRGCYC 3 cut(s) 1543, 2105, 3268
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 4 cut(s) 675, 688, 1543, 2105
BbvCI CCTCAGC 1 cut(s) 1521
BccI CCATC 9 cut(s) 505, 809, 1219, 1471, 2260, 2324, 2896, 3426, 3572
BceAI ACGGC 1 cut(s) 3433
BciT130I CCWGG 7 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262
BclI TGATCA 4 cut(s) 829, 2347, 2607, 3511
BcnI CCSGG 1 cut(s) 3423
BcoDI GTCTC 5 cut(s) 95, 896, 1814, 2747, 3832
BfmI CTRYAG 7 cut(s) 1773, 1914, 2154, 2187, 2361, 2862, 3378
BfoI RGCGCY 1 cut(s) 1176
BfrI CTTAAG 2 cut(s) 1391, 2795
BglI GCCNNNNNGGC 1 cut(s) 362
BglII AGATCT 2 cut(s) 3532, 4024
BlpI GCTNAGC 1 cut(s) 4099
Bme1390I CCNGG 8 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262, 3423
Bme18I GGWCC 3 cut(s) 3173, 3827, 4030
BmgBI CACGTC 2 cut(s) 234, 309
BmgT120I GGNCC 4 cut(s) 2504, 3173, 3827, 4030
BmiI GGNNCC 5 cut(s) 574, 657, 1722, 3174, 3427
BmrFI CCNGG 8 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262, 3423
BmtI GCTAGC 2 cut(s) 1496, 2574
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 4 cut(s) 1089, 1236, 1518, 2074
Bpu10I CCTNAGC 3 cut(s) 915, 1521, 4007
Bpu1102I GCTNAGC 1 cut(s) 4099
Bpu14I TTCGAA 2 cut(s) 1714, 2411
BpuEI CTTGAG 6 cut(s) 64, 548, 1146, 3569, 3732, 3836
BpuMI CCSGG 1 cut(s) 3423
Bsa29I ATCGAT 1 cut(s) 3759
BsaBI GATNNNNATC 2 cut(s) 1974, 2346
BsaI GGTCTC 1 cut(s) 2747
BsaJI CCNNGG 7 cut(s) 593, 2091, 2706, 3261, 3805, 3921, 3978
BsaXI ACNNNNNCTCC 2 cut(s) 1231, 1261
Bsc4I CCNNNNNNNGG 8 cut(s) 166, 1325, 1350, 2091, 3070, 3824, 3984, 4039
Bse118I RCCGGY 2 cut(s) 1343, 2966
Bse1I ACTGG 6 cut(s) 440, 1987, 2949, 3024, 3486, 3772
Bse3DI GCAATG 6 cut(s) 459, 993, 1354, 1533, 2103, 2859
Bse8I GATNNNNATC 2 cut(s) 1974, 2346
BseBI CCWGG 7 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262
BseCI ATCGAT 1 cut(s) 3759
BseDI CCNNGG 7 cut(s) 593, 2091, 2706, 3261, 3805, 3921, 3978
BseJI GATNNNNATC 2 cut(s) 1974, 2346
BseLI CCNNNNNNNGG 8 cut(s) 166, 1325, 1350, 2091, 3070, 3824, 3984, 4039
BseMI GCAATG 6 cut(s) 459, 993, 1354, 1533, 2103, 2859
BseNI ACTGG 6 cut(s) 440, 1987, 2949, 3024, 3486, 3772
BseRI GAGGAG 1 cut(s) 2447
BseSI GKGCMC 2 cut(s) 660, 3921
BseX3I CGGCCG 1 cut(s) 624
BseYI CCCAGC 3 cut(s) 660, 1779, 1891
BsgI GTGCAG 2 cut(s) 2122, 3000
Bsh1236I CGCG 3 cut(s) 1069, 2421, 3866
Bsh1285I CGRYCG 1 cut(s) 627
BshFI GGCC 6 cut(s) 626, 1903, 2114, 2506, 2811, 3245
BshNI GGYRCC 3 cut(s) 572, 655, 3425
BshVI ATCGAT 1 cut(s) 3759
BsiEI CGRYCG 1 cut(s) 627
BsiHKAI GWGCWC 4 cut(s) 675, 688, 1543, 2105
BsiSI CCGG 5 cut(s) 627, 1344, 1856, 2967, 3423
BslFI GGGAC 5 cut(s) 719, 1366, 2961, 3150, 3700
BslI CCNNNNNNNGG 8 cut(s) 166, 1325, 1350, 2091, 3070, 3824, 3984, 4039
BsmAI GTCTC 5 cut(s) 95, 896, 1814, 2747, 3832
BsmFI GGGAC 5 cut(s) 719, 1366, 2961, 3150, 3700
BsmI GAATGC 1 cut(s) 3335
BsnI GGCC 6 cut(s) 626, 1903, 2114, 2506, 2811, 3245
Bso31I GGTCTC 1 cut(s) 2747
Bsp119I TTCGAA 2 cut(s) 1714, 2411
Bsp1286I GDGCHC 7 cut(s) 660, 675, 688, 1543, 2105, 3268, 3921
Bsp1407I TGTACA 2 cut(s) 288, 3502
Bsp1720I GCTNAGC 1 cut(s) 4099
Bsp19I CCATGG 1 cut(s) 3805
Bsp68I TCGCGA 1 cut(s) 2421
BspACI CCGC 5 cut(s) 73, 78, 623, 961, 2644
BspANI GGCC 6 cut(s) 626, 1903, 2114, 2506, 2811, 3245
BspDI ATCGAT 1 cut(s) 3759
BspFNI CGCG 3 cut(s) 1069, 2421, 3866
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 574, 657, 1722, 3174, 3427
BspMAI CTGCAG 5 cut(s) 1777, 2158, 2365, 2866, 3382
BspOI GCTAGC 2 cut(s) 1496, 2574
BspPI GGATC 9 cut(s) 1305, 1603, 1904, 1970, 2285, 2554, 2718, 2764, 3409
BspQI GCTCTTC 1 cut(s) 2784
BspT104I TTCGAA 2 cut(s) 1714, 2411
BspT107I GGYRCC 3 cut(s) 572, 655, 3425
BspTI CTTAAG 2 cut(s) 1391, 2795
BspTNI GGTCTC 1 cut(s) 2747
BsrDI GCAATG 6 cut(s) 459, 993, 1354, 1533, 2103, 2859
BsrFI RCCGGY 2 cut(s) 1343, 2966
BsrGI TGTACA 2 cut(s) 288, 3502
BsrI ACTGG 6 cut(s) 440, 1987, 2949, 3024, 3486, 3772
BssAI RCCGGY 2 cut(s) 1343, 2966
BssECI CCNNGG 7 cut(s) 593, 2091, 2706, 3261, 3805, 3921, 3978
BssT1I CCWWGG 3 cut(s) 2706, 3805, 3921
Bst2UI CCWGG 7 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262
Bst4CI ACNGT 8 cut(s) 256, 285, 1243, 1996, 2029, 2188, 3233, 3706
Bst6I CTCTTC 2 cut(s) 2784, 2862
BstAFI CTTAAG 2 cut(s) 1391, 2795
BstAPI GCANNNNNTGC 5 cut(s) 896, 2240, 3122, 3374, 4073
BstAUI TGTACA 2 cut(s) 288, 3502
BstBI TTCGAA 2 cut(s) 1714, 2411
BstDSI CCRYGG 2 cut(s) 593, 3805
BstENI CCTNNNNNAGG 1 cut(s) 3068
BstFNI CGCG 3 cut(s) 1069, 2421, 3866
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 2 cut(s) 1175, 1663
BstMAI GTCTC 5 cut(s) 95, 896, 1814, 2747, 3832
BstMCI CGRYCG 1 cut(s) 627
BstNI CCWGG 7 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262
BstNSI RCATGY 3 cut(s) 1633, 2556, 3448
BstSCI CCNGG 8 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260, 3421
BstSFI CTRYAG 7 cut(s) 1773, 1914, 2154, 2187, 2361, 2862, 3378
BstSLI GKGCMC 2 cut(s) 660, 3921
BstUI CGCG 3 cut(s) 1069, 2421, 3866
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 6 cut(s) 1297, 1909, 2710, 3414, 3532, 4024
BstXI CCANNNNNNTGG 1 cut(s) 1899
BstYI RGATCY 6 cut(s) 1297, 1909, 2710, 3414, 3532, 4024
BstZI CGGCCG 1 cut(s) 624
Bsu15I ATCGAT 1 cut(s) 3759
BsuRI GGCC 6 cut(s) 626, 1903, 2114, 2506, 2811, 3245
BsuTUI ATCGAT 1 cut(s) 3759
BtgI CCRYGG 2 cut(s) 593, 3805
BtrI CACGTC 2 cut(s) 234, 309
BtsI GCAGTG 5 cut(s) 315, 2470, 2646, 3792, 4074
BtsIMutI CAGTG 9 cut(s) 315, 1239, 2470, 2646, 3017, 3238, 3493, 3792, 4074
BtuMI TCGCGA 1 cut(s) 2421
CaiI CAGNNNCTG 4 cut(s) 371, 1769, 2818, 2897
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 1175, 1663
Cfr10I RCCGGY 2 cut(s) 1343, 2966
Cfr13I GGNCC 4 cut(s) 2504, 3173, 3827, 4030
ClaI ATCGAT 1 cut(s) 3759
CseI GACGC 1 cut(s) 2183
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 7 cut(s) 289, 573, 2889, 3491, 3503, 3613, 3983
CspCI CAANNNNNGTGG 2 cut(s) 1066, 1101
CviQI GTAC 7 cut(s) 289, 573, 2889, 3491, 3503, 3613, 3983
DraI TTTAAA 3 cut(s) 132, 381, 429
EaeI YGGCCR 4 cut(s) 624, 1901, 2809, 3243
EagI CGGCCG 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 2784, 2862
EarI CTCTTC 2 cut(s) 2784, 2862
Ecl136II GAGCTC 2 cut(s) 1541, 2103
EclXI CGGCCG 1 cut(s) 624
Eco130I CCWWGG 3 cut(s) 2706, 3805, 3921
Eco24I GRGCYC 3 cut(s) 1543, 2105, 3268
Eco31I GGTCTC 1 cut(s) 2747
Eco32I GATATC 2 cut(s) 610, 1669
Eco47I GGWCC 3 cut(s) 3173, 3827, 4030
Eco47III AGCGCT 1 cut(s) 1174
Eco52I CGGCCG 1 cut(s) 624
Eco53kI GAGCTC 2 cut(s) 1541, 2103
Eco57I CTGAAG 3 cut(s) 390, 795, 1322
EcoICRI GAGCTC 2 cut(s) 1541, 2103
EcoNI CCTNNNNNAGG 1 cut(s) 3068
EcoO109I RGGNCCY 1 cut(s) 3173
EcoRII CCWGG 7 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260
EcoRV GATATC 2 cut(s) 610, 1669
EcoT14I CCWWGG 3 cut(s) 2706, 3805, 3921
EcoT22I ATGCAT 3 cut(s) 2275, 2558, 3944
EcoT38I GRGCYC 3 cut(s) 1543, 2105, 3268
ErhI CCWWGG 3 cut(s) 2706, 3805, 3921
FalI AAGNNNNNCTT 8 cut(s) 1836, 1868, 1856, 1888, 2621, 2653, 3282, 3314
FaqI GGGAC 5 cut(s) 719, 1366, 2961, 3150, 3700
FauNDI CATATG 2 cut(s) 106, 2761
FbaI TGATCA 4 cut(s) 829, 2347, 2607, 3511
FblI GTMKAC 1 cut(s) 1786
FriOI GRGCYC 3 cut(s) 1543, 2105, 3268
GlaI GCGC 2 cut(s) 1174, 1662
GsaI CCCAGC 3 cut(s) 664, 1783, 1895
GsuI CTGGAG 4 cut(s) 1089, 1236, 1518, 2074
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 6 cut(s) 626, 1903, 2114, 2506, 2811, 3245
HapII CCGG 5 cut(s) 627, 1344, 1856, 2967, 3423
HgaI GACGC 1 cut(s) 2183
HhaI GCGC 2 cut(s) 1175, 1663
Hin6I GCGC 2 cut(s) 1173, 1661
HinP1I GCGC 2 cut(s) 1173, 1661
HincII GTYRAC 2 cut(s) 201, 1787
HindII GTYRAC 2 cut(s) 201, 1787
HindIII AAGCTT 2 cut(s) 464, 3990
HpaI GTTAAC 1 cut(s) 201
HpaII CCGG 5 cut(s) 627, 1344, 1856, 2967, 3423
HphI GGTGA 8 cut(s) 494, 779, 967, 1931, 2213, 2273, 3239, 3550
Hpy166II GTNNAC 6 cut(s) 201, 1787, 3491, 3505, 3584, 3615
Hpy8I GTNNAC 6 cut(s) 201, 1787, 3491, 3505, 3584, 3615
HpyAV CCTTC 6 cut(s) 355, 1283, 1838, 2492, 2536, 3350
HpyCH4III ACNGT 8 cut(s) 256, 285, 1243, 1996, 2029, 2188, 3233, 3706
HpyCH4IV ACGT 2 cut(s) 233, 308
HpySE526I ACGT 2 cut(s) 233, 308
HspAI GCGC 2 cut(s) 1173, 1661
KpnI GGTACC 1 cut(s) 576
KroI GCCGGC 1 cut(s) 1343
KroNI GCCGGC 1 cut(s) 1345
Ksp22I TGATCA 4 cut(s) 829, 2347, 2607, 3511
KspAI GTTAAC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 2784
MabI ACCWGGT 1 cut(s) 651
MaeII ACGT 2 cut(s) 233, 308
MfeI CAATTG 2 cut(s) 920, 1487
MflI RGATCY 6 cut(s) 1297, 1909, 2710, 3414, 3532, 4024
MhlI GDGCHC 7 cut(s) 660, 675, 688, 1543, 2105, 3268, 3921
MlsI TGGCCA 2 cut(s) 1903, 2811
MluI ACGCGT 1 cut(s) 3864
MluNI TGGCCA 2 cut(s) 1903, 2811
MlyI GAGTC 3 cut(s) 3406, 3894, 4052
MmeI TCCRAC 3 cut(s) 2003, 2734, 3310
Mox20I TGGCCA 2 cut(s) 1903, 2811
Mph1103I ATGCAT 3 cut(s) 2275, 2558, 3944
MroNI GCCGGC 1 cut(s) 1343
MscI TGGCCA 2 cut(s) 1903, 2811
MslI CAYNNNNRTG 1 cut(s) 3423
Msp20I TGGCCA 2 cut(s) 1903, 2811
MspA1I CMGCKG 6 cut(s) 78, 664, 1895, 2444, 2600, 2897
MspCI CTTAAG 2 cut(s) 1391, 2795
MspI CCGG 5 cut(s) 627, 1344, 1856, 2967, 3423
MspR9I CCNGG 8 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262, 3423
MunI CAATTG 2 cut(s) 920, 1487
Mva1269I GAATGC 1 cut(s) 3335
MvaI CCWGG 7 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262
MvnI CGCG 3 cut(s) 1069, 2421, 3866
NaeI GCCGGC 1 cut(s) 1345
NciI CCSGG 1 cut(s) 3423
NcoI CCATGG 1 cut(s) 3805
NdeI CATATG 2 cut(s) 106, 2761
NgoMIV GCCGGC 1 cut(s) 1343
NheI GCTAGC 2 cut(s) 1492, 2570
NlaIV GGNNCC 5 cut(s) 574, 657, 1722, 3174, 3427
NmeAIII GCCGAG 1 cut(s) 3271
NmuCI GTSAC 3 cut(s) 1147, 3227, 3538
NruI TCGCGA 1 cut(s) 2421
NsiI ATGCAT 3 cut(s) 2275, 2558, 3944
NspI RCATGY 3 cut(s) 1633, 2556, 3448
NspV TTCGAA 2 cut(s) 1714, 2411
PaeI GCATGC 1 cut(s) 3448
PagI TCATGA 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 2784
PctI GAATGC 1 cut(s) 3335
PdiI GCCGGC 1 cut(s) 1345
PflMI CCANNNNNTGG 1 cut(s) 4039
PfoI TCCNGGA 2 cut(s) 1249, 1601
PleI GAGTC 3 cut(s) 3405, 3893, 4051
PpsI GAGTC 3 cut(s) 3405, 3893, 4051
PpuMI RGGWCCY 1 cut(s) 3173
PshBI ATTAAT 2 cut(s) 222, 2123
PsiI TTATAA 2 cut(s) 327, 3348
Psp124BI GAGCTC 2 cut(s) 1543, 2105
Psp5II RGGWCCY 1 cut(s) 3173
Psp6I CCWGG 7 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260
PspFI CCCAGC 3 cut(s) 660, 1779, 1891
PspGI CCWGG 7 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260
PspN4I GGNNCC 5 cut(s) 574, 657, 1722, 3174, 3427
PspPI GGNCC 4 cut(s) 2504, 3173, 3827, 4030
PspPPI RGGWCCY 1 cut(s) 3173
PsrI GAACNNNNNNTAC 2 cut(s) 3605, 3637
PstI CTGCAG 5 cut(s) 1777, 2158, 2365, 2866, 3382
PstNI CAGNNNCTG 4 cut(s) 371, 1769, 2818, 2897
PsuI RGATCY 6 cut(s) 1297, 1909, 2710, 3414, 3532, 4024
PvuII CAGCTG 5 cut(s) 664, 1895, 2444, 2600, 2897
RruI TCGCGA 1 cut(s) 2421
RsaI GTAC 7 cut(s) 290, 574, 2890, 3492, 3504, 3614, 3984
RsaNI GTAC 7 cut(s) 289, 573, 2889, 3491, 3503, 3613, 3983
RseI CAYNNNNRTG 1 cut(s) 3423
SacI GAGCTC 2 cut(s) 1543, 2105
SalI GTCGAC 1 cut(s) 1785
SapI GCTCTTC 1 cut(s) 2784
Sau96I GGNCC 4 cut(s) 2504, 3173, 3827, 4030
SchI GAGTC 3 cut(s) 3406, 3894, 4052
ScrFI CCNGG 8 cut(s) 653, 1251, 1603, 2092, 3150, 3216, 3262, 3423
SduI GDGCHC 7 cut(s) 660, 675, 688, 1543, 2105, 3268, 3921
SexAI ACCWGGT 1 cut(s) 651
SfcI CTRYAG 7 cut(s) 1773, 1914, 2154, 2187, 2361, 2862, 3378
SfuI TTCGAA 2 cut(s) 1714, 2411
SinI GGWCC 3 cut(s) 3173, 3827, 4030
SmiMI CAYNNNNRTG 1 cut(s) 3423
SmlI CTYRAG 8 cut(s) 43, 527, 1161, 1391, 2795, 3548, 3747, 3851
SmoI CTYRAG 8 cut(s) 43, 527, 1161, 1391, 2795, 3548, 3747, 3851
SphI GCATGC 1 cut(s) 3448
SsiI CCGC 5 cut(s) 73, 78, 623, 961, 2644
SstI GAGCTC 2 cut(s) 1543, 2105
StyD4I CCNGG 8 cut(s) 651, 1249, 1601, 2090, 3148, 3214, 3260, 3421
StyI CCWWGG 3 cut(s) 2706, 3805, 3921
TaaI ACNGT 8 cut(s) 256, 285, 1243, 1996, 2029, 2188, 3233, 3706
TaiI ACGT 2 cut(s) 236, 311
TaqI TCGA 6 cut(s) 1714, 1736, 1786, 2207, 2411, 3759
TaqII GACCGA 1 cut(s) 3746
TatI WGTACW 3 cut(s) 288, 2888, 3502
TauI GCSGC 2 cut(s) 626, 2646
TscAI CASTG 9 cut(s) 322, 1246, 2470, 2653, 3024, 3238, 3493, 3792, 4074
TseFI GTSAC 3 cut(s) 1147, 3227, 3538
Tsp45I GTSAC 3 cut(s) 1147, 3227, 3538
TspGWI ACGGA 3 cut(s) 582, 2746, 4000
TspRI CASTG 9 cut(s) 322, 1246, 2470, 2653, 3024, 3238, 3493, 3792, 4074
Van91I CCANNNNNTGG 1 cut(s) 4039
Vha464I CTTAAG 2 cut(s) 1391, 2795
VpaK11BI GGWCC 3 cut(s) 3173, 3827, 4030
VspI ATTAAT 2 cut(s) 222, 2123
XagI CCTNNNNNAGG 1 cut(s) 3068
XapI RAATTY 2 cut(s) 298, 879
XceI RCATGY 3 cut(s) 1633, 2556, 3448
XmiI GTMKAC 1 cut(s) 1786
Zsp2I ATGCAT 3 cut(s) 2275, 2558, 3944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.