Rorug06G0469100
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004278
Physical Location & Seq
Forward (+)
59312043 .. 59314854
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0469100.1

Sequence Viewer

Length: 1236 bp
ATGGAAAGAACCGAAAGCATCCCACTACAGCCACCAACTTATGGAAACCTAATCACTGTTCTAAGCATTGATGGAGGTGGAATAAGAGGGCTTATCCCAGGAACAATCCTTGCTTTTCTTGAATCTGAGCTTCAGAAGCTGGATGGGGAAGATGTAAGACTCGCCGACTACTTTGATGTGATTTCAGGGACAAGCACAGGAGGTCTTGTGACTGCTATGCTTACAACCCCAGATGAGAATAACAGACCGGTGTTTGCTGCTAAAGATATAAAGGACTTCTACCTTACTCATAGCCCCAAAATCTTCCCCCAGAAGACATGGTGGCTATTTCCTCGTCTTATAAACATCATCAAATCTCTAGTAGGACCAAAATACGATGGGAAGTATCTACATAGCTTGATTAGGGAAAAACTTGGTGACAAGAAACTGCATCAGACATTGACTAATGTTGTCATACCTGCGTTTGATATAAAGAATCTCCAGCCAACAATCTTTTCCAGCTTTGAGGTGAAAAAGAAGCCATCCTTTGATGCTTTGCTTTCAGACATAAGCATCGCAACCTCAGCAGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAAGGACGCGGAAGGGAAAGTAAGAGAATTCAACCTTATAGATGGTGGTGTAGCTGCAAATAATCCGACTCTAGTTGCTATTGGTGAAGTTACAAAGGAAATAATCAAGGGGAGCTCCGACTTTTTCCCTATAAAACCCATGGACTATGGAAGGTTTTTGGTTATATCATTAGGAACCGGCTCACCAAAAATTGAATTGAAGTACAATGCGCCGAGCGCGGCTAAATGGGGTATCTTGAATTGGTTAACCAGCGGTGGTTCCACTCCAATCATTAACGTTTTTAGTCATGCAAGTGCCGATATGGTCGATCTTCACCTTTCTGTAGTTTTCCAAGCCCTTCACTCAGAGAAAAATTATCTTCGAATTCAGGATGATACGCTAAGTGGACAAGTATCTTCGGTGGATGTAGCCACAAAGAAAAATTTGAACGATCTCCTAGGAGTTGGAGAAGGCCTATTGAAGAAACCAGTGTCTAGGGTTAATTTGGGGAATGGCAGATTTGAGGCTTCCAATCATGAGACCAACGAAGAGGCTCTTATAAGGTTTGCAAAACTACTCTCTGAAGAGAAGTGGCTTCGCCTTGCAAGGTCACCTCACGGAAAATGTGACATGCCCATGCCGAACTCCCATTGA

Protein Analysis

411

Amino Acids

45.25

Weight (kDa)

6.81

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 21 - 228 7.3e-26 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 341, 1142
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 41
AccII CGCG 2 cut(s) 611, 821
AciI CCGC 3 cut(s) 611, 821, 855
AclI AACGTT 1 cut(s) 879
AcsI RAATTY 3 cut(s) 629, 966, 1024
AcuI CTGAAG 2 cut(s) 116, 1185
AfaI GTAC 1 cut(s) 806
AfiI CCNNNNNNNGG 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 8 cut(s) 122, 599, 634, 797, 802, 841, 1030, 1063
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 7 cut(s) 130, 139, 396, 501, 587, 656, 717
AluI AGCT 7 cut(s) 130, 139, 396, 501, 587, 656, 717
Alw21I GWGCWC 1 cut(s) 719
Alw26I GTCTC 1 cut(s) 1115
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 1 cut(s) 1054
ApeKI GCWGC 3 cut(s) 257, 566, 656
ApoI RAATTY 3 cut(s) 629, 966, 1024
AsiGI ACCGGT 1 cut(s) 247
AspA2I CCTAGG 1 cut(s) 1039
AspLEI GCGC 2 cut(s) 814, 821
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 6 cut(s) 428, 520, 698, 777, 908, 1185
AsuII TTCGAA 1 cut(s) 964
AvaII GGWCC 1 cut(s) 365
AvrII CCTAGG 1 cut(s) 1039
BanII GRGCYC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 719
BbvCI CCTCAGC 1 cut(s) 562
BbvI GCAGC 3 cut(s) 244, 578, 643
BccI CCATC 5 cut(s) 65, 137, 371, 529, 638
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 4 cut(s) 359, 674, 1040, 1077
BfmI CTRYAG 2 cut(s) 26, 924
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 4 cut(s) 258, 567, 657, 822
BlnI CCTAGG 1 cut(s) 1039
BlsI GCNGC 4 cut(s) 259, 568, 658, 823
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 778, 862
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 4 cut(s) 27, 439, 520, 561
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 562
Bpu14I TTCGAA 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 1115
BsaJI CCNNGG 4 cut(s) 97, 603, 741, 1039
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 2 cut(s) 247, 779
Bse1I ACTGG 1 cut(s) 1070
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 97, 603, 741, 1039
BseGI GGATG 5 cut(s) 18, 148, 521, 979, 1012
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 3 cut(s) 117, 576, 960
BseNI ACTGG 1 cut(s) 1070
BseXI GCAGC 3 cut(s) 244, 578, 643
Bsh1236I CGCG 2 cut(s) 611, 821
BshFI GGCC 1 cut(s) 1056
BshTI ACCGGT 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 719
BsiSI CCGG 2 cut(s) 248, 780
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 1056
Bso31I GGTCTC 1 cut(s) 1115
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 719
Bsp143I GATC 2 cut(s) 910, 1033
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 3 cut(s) 611, 821, 855
BspANI GGCC 1 cut(s) 1056
BspCNI CTCAG 3 cut(s) 118, 575, 959
BspFNI CGCG 2 cut(s) 611, 821
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 2 cut(s) 778, 862
BspMI ACCTGC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 964
BspTNI GGTCTC 1 cut(s) 1115
BsrFI RCCGGY 2 cut(s) 247, 779
BsrI ACTGG 1 cut(s) 1070
BssAI RCCGGY 2 cut(s) 247, 779
BssECI CCNNGG 4 cut(s) 97, 603, 741, 1039
BssMI GATC 2 cut(s) 910, 1033
BssT1I CCWWGG 3 cut(s) 603, 741, 1039
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 1125, 1161
BstBI TTCGAA 1 cut(s) 964
BstDEI CTNAG 5 cut(s) 62, 126, 562, 946, 983
BstDSI CCRYGG 1 cut(s) 741
BstEII GGTNACC 1 cut(s) 1191
BstF5I GGATG 5 cut(s) 18, 148, 521, 979, 1012
BstFNI CGCG 2 cut(s) 611, 821
BstHHI GCGC 2 cut(s) 814, 821
BstKTI GATC 2 cut(s) 913, 1036
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 2 cut(s) 910, 1033
BstMWI GCNNNNNNNGC 3 cut(s) 136, 563, 818
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 1216
BstPI GGTNACC 1 cut(s) 1191
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 2 cut(s) 26, 924
BstUI CGCG 2 cut(s) 611, 821
BstV1I GCAGC 3 cut(s) 244, 578, 643
BstV2I GAAGAC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 1056
BtgI CCRYGG 1 cut(s) 741
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 5 cut(s) 18, 148, 521, 979, 1012
BtsIMutI CAGTG 2 cut(s) 54, 1077
BveI ACCTGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 2 cut(s) 814, 821
Cfr10I RCCGGY 2 cut(s) 247, 779
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 805
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 6 cut(s) 318, 742, 890, 1118, 1213, 1219
CviQI GTAC 1 cut(s) 805
DdeI CTNAG 5 cut(s) 62, 126, 562, 946, 983
DpnI GATC 2 cut(s) 912, 1035
DpnII GATC 2 cut(s) 910, 1033
Eam1104I CTCTTC 2 cut(s) 1125, 1161
EarI CTCTTC 2 cut(s) 1125, 1161
Ecl136II GAGCTC 1 cut(s) 717
Eco130I CCWWGG 3 cut(s) 603, 741, 1039
Eco147I AGGCCT 1 cut(s) 1056
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 1115
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 717
Eco57I CTGAAG 2 cut(s) 116, 1185
Eco91I GGTNACC 1 cut(s) 1191
EcoICRI GAGCTC 1 cut(s) 717
EcoO65I GGTNACC 1 cut(s) 1191
EcoRI GAATTC 2 cut(s) 629, 966
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 3 cut(s) 603, 741, 1039
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 3 cut(s) 603, 741, 1039
FaeI CATG 6 cut(s) 321, 745, 893, 1121, 1216, 1222
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 1122, 1154
FaqI GGGAC 1 cut(s) 202
FatI CATG 6 cut(s) 317, 741, 889, 1117, 1212, 1218
Fnu4HI GCNGC 4 cut(s) 258, 567, 657, 822
FokI GGATG 5 cut(s) 5, 155, 508, 986, 1019
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 4 cut(s) 258, 567, 657, 822
FspBI CTAG 4 cut(s) 359, 674, 1040, 1077
GlaI GCGC 2 cut(s) 813, 820
GluI GCNGC 4 cut(s) 258, 567, 657, 822
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 1056
HapII CCGG 2 cut(s) 248, 780
HgaI GACGC 1 cut(s) 617
HhaI GCGC 2 cut(s) 814, 821
Hin1II CATG 6 cut(s) 321, 745, 893, 1121, 1216, 1222
Hin6I GCGC 2 cut(s) 812, 819
HinP1I GCGC 2 cut(s) 812, 819
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 4 cut(s) 122, 159, 475, 670
HpaI GTTAAC 1 cut(s) 849
HpaII CCGG 2 cut(s) 248, 780
HphI GGTGA 6 cut(s) 428, 520, 698, 777, 908, 1185
Hpy166II GTNNAC 2 cut(s) 849, 989
Hpy188I TCNGA 8 cut(s) 127, 135, 435, 544, 669, 721, 949, 1165
Hpy188III TCNNGA 4 cut(s) 119, 838, 971, 1118
Hpy8I GTNNAC 2 cut(s) 849, 989
HpyAV CCTTC 4 cut(s) 608, 747, 950, 1046
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 879
HpyCH4V TGCA 5 cut(s) 430, 659, 893, 1151, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 563, 818
HpyF3I CTNAG 5 cut(s) 62, 126, 562, 946, 983
HpySE526I ACGT 1 cut(s) 879
Hsp92II CATG 6 cut(s) 321, 745, 893, 1121, 1216, 1222
HspAI GCGC 2 cut(s) 812, 819
KspAI GTTAAC 1 cut(s) 849
Kzo9I GATC 2 cut(s) 910, 1033
LmnI GCTCC 2 cut(s) 714, 722
Lsp1109I GCAGC 3 cut(s) 244, 578, 643
LweI GCATC 4 cut(s) 27, 439, 520, 561
MaeI CTAG 4 cut(s) 359, 674, 1040, 1077
MaeII ACGT 1 cut(s) 879
MaeIII GTNAC 5 cut(s) 208, 416, 691, 1191, 1208
MalI GATC 2 cut(s) 912, 1035
MboI GATC 2 cut(s) 910, 1033
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
MlyI GAGTC 2 cut(s) 153, 664
MmeI TCCRAC 3 cut(s) 692, 744, 1027
MnlI CCTC 9 cut(s) 68, 80, 194, 342, 499, 571, 1099, 1126, 1206
MseI TTAA 3 cut(s) 848, 876, 1083
MslI CAYNNNNRTG 2 cut(s) 894, 1217
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 2 cut(s) 248, 780
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 2 cut(s) 611, 821
MwoI GCNNNNNNNGC 3 cut(s) 136, 563, 818
NcoI CCATGG 1 cut(s) 741
NdeII GATC 2 cut(s) 910, 1033
NlaIII CATG 6 cut(s) 321, 745, 893, 1121, 1216, 1222
NlaIV GGNNCC 2 cut(s) 778, 862
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 4 cut(s) 208, 416, 1191, 1208
NspI RCATGY 1 cut(s) 1216
NspV TTCGAA 1 cut(s) 964
PagI TCATGA 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 122, 475
PflMI CCANNNNNTGG 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 247
PkrI GCNGC 4 cut(s) 259, 568, 658, 823
PleI GAGTC 2 cut(s) 153, 664
PpsI GAGTC 2 cut(s) 153, 664
PsiI TTATAA 2 cut(s) 341, 1142
Psp124BI GAGCTC 1 cut(s) 719
Psp1406I AACGTT 1 cut(s) 879
Psp6I CCWGG 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 1191
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 778, 862
PspPI GGNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 806
RsaNI GTAC 1 cut(s) 805
RseI CAYNNNNRTG 2 cut(s) 894, 1217
SacI GAGCTC 1 cut(s) 719
SaqAI TTAA 3 cut(s) 848, 876, 1083
SatI GCNGC 4 cut(s) 258, 567, 657, 822
Sau3AI GATC 2 cut(s) 910, 1033
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 2 cut(s) 153, 664
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 719
SfaNI GCATC 4 cut(s) 27, 439, 520, 561
SfcI CTRYAG 2 cut(s) 26, 924
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 894, 1217
Sse9I AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
SseBI AGGCCT 1 cut(s) 1056
SsiI CCGC 3 cut(s) 611, 821, 855
SspMI CTAG 4 cut(s) 359, 674, 1040, 1077
SstI GAGCTC 1 cut(s) 719
StuI AGGCCT 1 cut(s) 1056
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 3 cut(s) 603, 741, 1039
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 882
TaqI TCGA 2 cut(s) 909, 964
TasI AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
TatI WGTACW 1 cut(s) 804
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 2 cut(s) 122, 475
Tru1I TTAA 3 cut(s) 848, 876, 1083
Tru9I TTAA 3 cut(s) 848, 876, 1083
TscAI CASTG 2 cut(s) 61, 1077
TseFI GTSAC 4 cut(s) 208, 416, 1191, 1208
TseI GCWGC 3 cut(s) 257, 566, 656
Tsp45I GTSAC 4 cut(s) 208, 416, 1191, 1208
TspGWI ACGGA 1 cut(s) 1215
TspRI CASTG 2 cut(s) 61, 1077
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 3 cut(s) 629, 966, 1024
XceI RCATGY 1 cut(s) 1216
XmaJI CCTAGG 1 cut(s) 1039
XspI CTAG 4 cut(s) 359, 674, 1040, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.