Rorug06G0469300
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004278
Physical Location & Seq
Forward (+)
59329852 .. 59330391
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0469300.1

Sequence Viewer

Length: 540 bp
ATGGAGCTACAAACCCAGCAACAAATTGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACCGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGCTTCTACTGGTAATGAAGGATTTATTTACTTAAATTTTGTTTCATAA

Protein Analysis

179

Amino Acids

19.25

Weight (kDa)

5.54

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.5e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 413
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 3 cut(s) 78, 329, 413
AflIII ACRYGT 1 cut(s) 214
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 7, 199, 410
AluI AGCT 3 cut(s) 7, 199, 410
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 4 cut(s) 357, 404, 438, 486
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 3 cut(s) 357, 438, 486
BaeGI GKGCMC 2 cut(s) 164, 306
BamHI GGATCC 5 cut(s) 123, 335, 383, 416, 464
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 94, 324
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 2 cut(s) 315, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 3 cut(s) 55, 94, 324
Bme18I GGWCC 3 cut(s) 357, 438, 486
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 357, 404, 438, 486
BmrFI CCNGG 3 cut(s) 55, 94, 324
BpmI CTGGAG 2 cut(s) 93, 179
BpuEI CTTGAG 2 cut(s) 113, 282
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 329, 413
Bse1I ACTGG 6 cut(s) 205, 334, 367, 376, 457, 505
BseBI CCWGG 2 cut(s) 94, 324
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 78, 329, 413
BseNI ACTGG 6 cut(s) 205, 334, 367, 376, 457, 505
BseSI GKGCMC 2 cut(s) 164, 306
BseXI GCAGC 2 cut(s) 62, 280
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 78, 329, 413
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 164, 177, 262, 306
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 406
BsrI ACTGG 6 cut(s) 205, 334, 367, 376, 457, 505
BssECI CCNNGG 1 cut(s) 306
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 324
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 94, 324
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 53, 92, 322
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 164, 306
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BstYI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 360, 489
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 4 cut(s) 357, 404, 438, 486
Csp6I GTAC 1 cut(s) 327
CviAII CATG 2 cut(s) 215, 307
CviJI RGCY 8 cut(s) 7, 53, 87, 199, 260, 293, 406, 410
CviKI_1 RGCY 8 cut(s) 7, 53, 87, 199, 260, 293, 406, 410
CviQI GTAC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 357, 438, 486
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 92, 322
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 218, 310
FaiI YATR 4 cut(s) 210, 216, 308, 538
FatI CATG 2 cut(s) 214, 306
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 444
GluI GCNGC 2 cut(s) 51, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 93, 179
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 54
Hin1II CATG 2 cut(s) 218, 310
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 3 cut(s) 360, 441, 489
Hpy188III TCNNGA 4 cut(s) 110, 182, 247, 263
Hpy8I GTNNAC 3 cut(s) 360, 441, 489
HpyAV CCTTC 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 285
Hsp92II CATG 2 cut(s) 218, 310
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 62, 280
MaeI CTAG 2 cut(s) 315, 444
MboII GAAGA 1 cut(s) 289
MflI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
MhlI GDGCHC 4 cut(s) 164, 177, 262, 306
MluCI AATT 6 cut(s) 24, 349, 397, 430, 478, 526
MnlI CCTC 4 cut(s) 22, 137, 214, 273
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 55, 94, 324
MvaI CCWGG 2 cut(s) 94, 324
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 2 cut(s) 218, 310
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 92, 322
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 92, 322
PspPI GGNCC 4 cut(s) 357, 404, 438, 486
PsuI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 2 cut(s) 51, 294
Sau96I GGNCC 4 cut(s) 357, 404, 438, 486
ScrFI CCNGG 3 cut(s) 55, 94, 324
SduI GDGCHC 4 cut(s) 164, 177, 262, 306
SetI ASST 5 cut(s) 9, 98, 201, 284, 412
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 3 cut(s) 357, 438, 486
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 297
SmoI CTYRAG 3 cut(s) 128, 261, 297
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 6 cut(s) 24, 349, 397, 430, 478, 526
SspMI CTAG 2 cut(s) 315, 444
StyD4I CCNGG 3 cut(s) 53, 92, 322
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 6 cut(s) 24, 349, 397, 430, 478, 526
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 2 cut(s) 367, 496
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 2 cut(s) 367, 496
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 357, 438, 486
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 315, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.