Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004278

Physical Location & Seq

Genomic Coordinates Forward (+)

59330457 .. 59330660

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0469400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAACAACGAGGAGGAGTTCGCCAGGAGTTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

67

Amino Acids

7.22

Weight (kDa)

4.43

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18410 AT1G18410 AT1G18410 AT1G18410 AT1G18410 AT1G73860 AT1G73860
fragaria_vesca	FvH4_5g12130 FvH4_5g12130
malus_domestica	MD06G1216000.v1.1 MD14G1226600.v1.1
prunus_persica	Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1
pyrus_communis	pycom06g19260 pycom14g18800
rosa_chinensis	RchiOBHm_Chr7g0185441 RchiOBHm_Chr7g0185451
rosa_laevigata	RLG00000004912
rosa_multiflora	Rmu_sc0010190.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268930
rosa_rugosa	Rorug06G0469100 Rorug06G0469200 Rorug06G0469300 Rorug06G0469400 Rorug06G0469500
rosa_samantha	Rh7AG073500 Rh7BG074100 Rh7CG074300 Rh7DG074200
rosa_wichuraiana	Rw7G006170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	172, 194
AluI	AGCT	2 cut(s)	172, 194
Alw21I	GWGCWC	2 cut(s)	60, 174
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	60, 174
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	96, 148
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	96, 148
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	147, 187
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	27, 30
BseSI	GKGCMC	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	60, 174
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	60, 174
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	152
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	146, 186
BspEI	TCCGGA	1 cut(s)	188
BspPI	GGATC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	96, 148
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	133, 173
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	110
CviJI	RGCY	4 cut(s)	132, 172, 177, 194
CviKI_1	RGCY	4 cut(s)	132, 172, 177, 194
DdeI	CTNAG	2 cut(s)	133, 173
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	174
FaiI	YATR	3 cut(s)	75, 112, 114
FauNDI	CATATG	1 cut(s)	112
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	167, 189
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	133, 173
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	11, 38, 120, 171
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	77, 140
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	2 cut(s)	32, 97
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	60, 174
MnlI	CCTC	6 cut(s)	5, 8, 54, 58, 91, 188
MroI	TCCGGA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	39
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	60, 174
SetI	ASST	4 cut(s)	72, 106, 174, 196
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.