Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004278

Physical Location & Seq

Genomic Coordinates Reverse (-)

59342581 .. 59343177

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0469500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTTCCAGTGAAGTCTCGCTTGAAGTTCCTCCATACGCGCGAGTACTCAAAGATGGAACAATTGAGAGACTTGCCGGATCCCAAGTTGTTCCGGCCGGGTTGGACCTTCAAACCGGAGTTTTTTCCAAAGACATAGTGATTTTCCCACAAACCGGTGTCTCAGCTAGAGTCGCTAGACTTTACCGACCCAATATCACTGGTACCGACCAAAAGCTTCCTTTGATCGTTTACTATCATGGTGGAGCTTTTTGCATAGCTTCAGCTCCCGAGCCACGTACTCTACGTCTCTACCACAACTGCCTTAACATGCTTGTTGCTGAGGCCAGAGCTATTGCTGTTTCTATTAATTACAGATTAGCCCCTGAGCATCCATTACCGATTGCCTATGAGGATTCTTGGGCAGTACTTCAATGGGTTTTTGGTGGTGAAGATCGTGACGATTGGGTTAAGGATCATGTTGAATTTGAGCGAGCAGTGTTCTTGGTGGGAGATAGTGCTGGGCCTAATATTGCACACCACTTGGCCTTGCGGGTCAAGAAGTCCGACCCATCCTTATTTCTGGGGGAAAGTTCCGATTGGCCGGGAGGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

198

Amino Acids

21.67

Weight (kDa)

5.65

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	68 - 180	4.9e-08	BD-FAE
Abhydrolase_3	PF07859	76 - 182	9.5e-31	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18410 AT1G18410 AT1G18410 AT1G18410 AT1G18410 AT1G73860 AT1G73860
fragaria_vesca	FvH4_5g12130 FvH4_5g12130
malus_domestica	MD06G1216000.v1.1 MD14G1226600.v1.1
prunus_persica	Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1 Prupe.5G221200_v2.0.a1
pyrus_communis	pycom06g19260 pycom14g18800
rosa_chinensis	RchiOBHm_Chr7g0185441 RchiOBHm_Chr7g0185451
rosa_laevigata	RLG00000004912
rosa_multiflora	Rmu_sc0010190.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268930
rosa_rugosa	Rorug06G0469100 Rorug06G0469200 Rorug06G0469300 Rorug06G0469400 Rorug06G0469500
rosa_samantha	Rh7AG073500 Rh7BG074100 Rh7CG074300 Rh7DG074200
rosa_wichuraiana	Rw7G006170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	2 cut(s)	41, 43
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	3 cut(s)	75, 88, 462
AcoI	YGGCCR	2 cut(s)	96, 581
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	4 cut(s)	48, 205, 280, 408
AfiI	CCNNNNNNNGG	2 cut(s)	155, 590
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	26, 113, 413, 464
AluBI	AGCT	6 cut(s)	167, 217, 248, 260, 266, 332
AluI	AGCT	6 cut(s)	167, 217, 248, 260, 266, 332
Alw26I	GTCTC	4 cut(s)	22, 64, 166, 293
AlwI	GGATC	3 cut(s)	75, 88, 462
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	5 cut(s)	96, 324, 503, 525, 581
ApoI	RAATTY	1 cut(s)	464
AseI	ATTAAT	1 cut(s)	348
AsiGI	ACCGGT	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	106, 503
AsuC2I	CCSGG	2 cut(s)	100, 585
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	50, 559
BcnI	CCSGG	2 cut(s)	100, 585
BcoDI	GTCTC	4 cut(s)	22, 64, 166, 293
BfaI	CTAG	2 cut(s)	168, 177
BmcAI	AGTACT	2 cut(s)	48, 408
Bme1390I	CCNGG	2 cut(s)	100, 585
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	106, 503
BmiI	GGNNCC	3 cut(s)	7, 82, 205
BmrFI	CCNGG	2 cut(s)	100, 585
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	2 cut(s)	321, 366
BpuMI	CCSGG	2 cut(s)	100, 585
BsaAI	YACGTR	1 cut(s)	278
BsaWI	WCCGGW	2 cut(s)	116, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 590
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	9, 205
BseGI	GGATG	2 cut(s)	370, 551
BseLI	CCNNNNNNNGG	2 cut(s)	155, 590
BseMII	CTCAG	3 cut(s)	177, 312, 357
BseNI	ACTGG	2 cut(s)	9, 205
BseX3I	CGGCCG	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	41, 43
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	98, 326, 505, 527, 583
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	6 cut(s)	78, 95, 99, 117, 156, 584
BslI	CCNNNNNNNGG	2 cut(s)	155, 590
BsmAI	GTCTC	4 cut(s)	22, 64, 166, 293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	5 cut(s)	98, 326, 505, 527, 583
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	4 cut(s)	80, 225, 433, 454
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	5 cut(s)	98, 326, 505, 527, 583
BspCNI	CTCAG	3 cut(s)	176, 313, 358
BspFNI	CGCG	2 cut(s)	41, 43
BspLI	GGNNCC	3 cut(s)	7, 82, 205
BspPI	GGATC	3 cut(s)	75, 88, 462
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	9, 205
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	4 cut(s)	80, 225, 433, 454
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	163, 321, 366
BstF5I	GGATG	2 cut(s)	370, 551
BstFNI	CGCG	2 cut(s)	41, 43
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	83, 228, 436, 457
BstMAI	GTCTC	4 cut(s)	22, 64, 166, 293
BstMBI	GATC	4 cut(s)	80, 225, 433, 454
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	98, 583
BstUI	CGCG	2 cut(s)	41, 43
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	5 cut(s)	98, 326, 505, 527, 583
BtsCI	GGATG	2 cut(s)	370, 551
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	16, 198, 483
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	106, 503
Csp6I	GTAC	4 cut(s)	47, 204, 279, 407
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	3 cut(s)	239, 310, 458
CviQI	GTAC	4 cut(s)	47, 204, 279, 407
DdeI	CTNAG	3 cut(s)	163, 321, 366
DpnI	GATC	4 cut(s)	82, 227, 435, 456
DpnII	GATC	4 cut(s)	80, 225, 433, 454
EaeI	YGGCCR	2 cut(s)	96, 581
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	3 cut(s)	242, 313, 461
FaiI	YATR	7 cut(s)	37, 137, 240, 257, 311, 390, 459
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	3 cut(s)	238, 309, 457
FauI	CCCGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	357, 538
FspBI	CTAG	2 cut(s)	168, 177
GlaI	GCGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	5 cut(s)	98, 326, 505, 527, 583
HapII	CCGG	6 cut(s)	78, 95, 99, 117, 156, 584
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	242, 313, 461
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	171, 395
HpaII	CCGG	6 cut(s)	78, 95, 99, 117, 156, 584
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	547, 577
Hpy188III	TCNNGA	3 cut(s)	269, 437, 538
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	277, 286
HpyCH4V	TGCA	2 cut(s)	255, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	163, 321, 366
HpySE526I	ACGT	2 cut(s)	277, 286
Hsp92II	CATG	3 cut(s)	242, 313, 461
HspAI	GCGC	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	80, 225, 433, 454
LmnI	GCTCC	2 cut(s)	245, 271
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	168, 177
MaeII	ACGT	2 cut(s)	277, 286
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	82, 227, 435, 456
MboI	GATC	4 cut(s)	80, 225, 433, 454
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	3 cut(s)	63, 349, 464
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	84, 570
MnlI	CCTC	4 cut(s)	42, 316, 385, 581
MseI	TTAA	3 cut(s)	306, 348, 450
MspI	CCGG	6 cut(s)	78, 95, 99, 117, 156, 584
MspR9I	CCNGG	2 cut(s)	100, 585
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	41, 43
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	2 cut(s)	100, 585
NdeII	GATC	4 cut(s)	80, 225, 433, 454
NlaIII	CATG	3 cut(s)	242, 313, 461
NlaIV	GGNNCC	3 cut(s)	7, 82, 205
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	7, 82, 205
PspPI	GGNCC	2 cut(s)	106, 503
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	4 cut(s)	48, 205, 280, 408
RsaNI	GTAC	4 cut(s)	47, 204, 279, 407
SaqAI	TTAA	3 cut(s)	306, 348, 450
Sau3AI	GATC	4 cut(s)	80, 225, 433, 454
Sau96I	GGNCC	2 cut(s)	106, 503
ScaI	AGTACT	2 cut(s)	48, 408
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	100, 585
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	63, 349, 464
SsiI	CCGC	1 cut(s)	532
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	168, 177
StyD4I	CCNGG	2 cut(s)	98, 583
TaiI	ACGT	2 cut(s)	280, 289
TasI	AATT	3 cut(s)	63, 349, 464
TatI	WGTACW	2 cut(s)	46, 406
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	3 cut(s)	306, 348, 450
Tru9I	TTAA	3 cut(s)	306, 348, 450
TscAI	CASTG	3 cut(s)	16, 205, 483
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspRI	CASTG	3 cut(s)	16, 205, 483
VpaK11BI	GGWCC	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	2 cut(s)	168, 177
ZrmI	AGTACT	2 cut(s)	48, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.