Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004637

Physical Location & Seq

Genomic Coordinates Reverse (-)

36946746 .. 36949215

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGTATTGTGGTGGAGATGTTCTCAGCTCCGCCCCCGATATGTTAGAAGCAGGAGTATGGGAAGATGGAGATTGTGGTGGAGCAGAATTCGAGGATGCTGGCATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAACGATAAGATTGTCAATGAAGCTACAAAATTCAGATACCCAAGTGGAAACCAATTTAACTGTGGAGGTGAAAACTTCACTTGTTTCATTGCTTTGAAGCTTACTCACTTTGCAGTTCCTTGTATAACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006730 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046500 GO:0046686 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051052 GO:0051171 GO:0051186 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072505 GO:0080090 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

118

Amino Acids

12.88

Weight (kDa)

4.89

Isoelectric Point (pI)

16.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22020 AT1G22020 AT1G36370
fragaria_vesca	FvH4_5g28970 FvH4_5g38450 FvH4_5g38450
malus_domestica	MD04G1132900.v1.1 MD12G1145600.v1.1
prunus_persica	Prupe.1G507500_v2.0.a1 Prupe.1G507600_v2.0.a1
pyrus_communis	pycom04g12080 pycom12g13990 pycom15g32210
rosa_chinensis	RchiOBHm_Chr7g0221291 RchiOBHm_Chr7g0240491
rosa_laevigata	RLG00000000675 RLG00000002164
rosa_multiflora	Rmu_sc0000324.1_g000020 Rmu_sc0005327.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219940 Rroxscaffold_3G00238440
rosa_rugosa	Rorug07G0202000 Rorug07G0336600
rosa_samantha	Rh7AG341100 Rh7AG491000 Rh7BG332100 Rh7BG463500 Rh7CG359000 Rh7CG507100
rosa_wichuraiana	Rw7G029010 Rw7G041140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	89, 251
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	120, 319
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	3 cut(s)	30, 245, 322
AluI	AGCT	3 cut(s)	30, 245, 322
ApoI	RAATTY	2 cut(s)	89, 251
AspLEI	GCGC	2 cut(s)	162, 204
AsuHPI	GGTGA	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BanI	GGYRCC	1 cut(s)	159
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	180
BfoI	RGCGCY	2 cut(s)	163, 205
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	161, 214
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	88, 134
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	161, 214
BspT107I	GGYRCC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	26, 354
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	163, 205
BstHHI	GCGC	2 cut(s)	162, 204
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	162, 204
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	30, 131, 215, 245, 322
CviKI_1	RGCY	5 cut(s)	30, 131, 215, 245, 322
DdeI	CTNAG	2 cut(s)	26, 354
DinI	GGCGCC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	216
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	109
FaiI	YATR	9 cut(s)	44, 61, 107, 113, 115, 176, 189, 195, 347
FatI	CATG	1 cut(s)	105
FokI	GGATG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	161, 203
HaeII	RGCGCY	2 cut(s)	163, 205
HhaI	GCGC	2 cut(s)	162, 204
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	160, 202
HinP1I	GCGC	2 cut(s)	160, 202
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	320
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	150, 257
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	26, 354
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	160, 202
KasI	GGCGCC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	35, 83, 212
LpnPI	CCDG	4 cut(s)	39, 87, 165, 192
LweI	GCATC	2 cut(s)	88, 134
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	3 cut(s)	89, 251, 275
MluI	ACGCGT	1 cut(s)	142
Mly113I	GGCGCC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	88, 149, 215, 281
MseI	TTAA	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	161, 214
PluTI	GGCGCC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	161, 214
SaqAI	TTAA	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	6 cut(s)	32, 181, 222, 247, 292, 324
SfaNI	GCATC	2 cut(s)	88, 134
SfoI	GGCGCC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	89, 251, 275
SsiI	CCGC	1 cut(s)	33
SspDI	GGCGCC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	89, 251, 275
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	122, 255, 298
XapI	RAATTY	2 cut(s)	89, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.