Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005632

Physical Location & Seq

Genomic Coordinates Forward (+)

37889870 .. 37890649

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0343300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGTCAAACCTCCAATACTGGCTAGTTGAGCACCCAAGCATCCTCCACTTCTCATGGACGGAGGGTCAAACCCCTGCCTCCACCCCACTCTTCCTCATCCTCGCCCTCCTCTCCTATCTCTCCCTCACTCTCCTCCTCACGCGCCTCCCTCTCTCCCCCCTCAACCCCGCCCTCCTCAAACCAATCTCAGCCCTCCACAACCTCACCCTCCTCCTCCTCTCCCTCATCATGGCCGTCGCTTGCACCCTCTCCATCCTCTCCTCCCCTTCCTCCACCCTCTGCTTCTCCCCCAACACTAATCCCACCGGGCCCCTCTTCTTCTGGGCCTACGTCTTCTACCTCTCCAAGATCCTCGAACTCCTCGACACCCTCTTCATCATCCTCAGTGGCTCCCTCCGCCGCCTCTCCCTCCTCCACGTGTACCACCACGCCACCGTGCTCGTCATGTGCTACCTCTGGCTCCACACTCGCCAGTCCCTGTTCCCGGTGGCGCTCGTGACCAATGCCTCCGTGCACGTGCTCATGTACGCCTACTACTTGCTCTGCGCGGTTGGGATCCGCCCCAGGTGGAAGCGGGCCGTCACGGACTGCCAGATAGTCCAGTTCGTGTTCAGCTTTGCCGTGTCGGGTCGGATGCTCTACCTGCATTTCTCCGGGTCCGGCTGCTCCGGAATATGGGGATGGTGCTTCAATGCCGTCTTCAATGCCTCGCTTTTGGTTCTCTTCCTTGACTTTCATGGGAAGAGCTATGCGGGTCCAAAGGATAAACGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004348 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005790 GO:0005886 GO:0006082 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0012505 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901360 GO:1901564 GO:1901575 GO:1901615 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

259

Amino Acids

29.09

Weight (kDa)

9.34

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	26 - 258	1.9e-59	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49900 AT5G49900 AT5G49900
fragaria_vesca	FvH4_5g39140 FvH4_5g39140 FvH4_5g39140 FvH4_5g39140 FvH4_5g39140
malus_domestica	MD08G1245400.v1.1 MD15G1440400.v1.1
prunus_persica	Prupe.1G582500_v2.0.a1 Prupe.1G582500_v2.0.a1
pyrus_communis	pycom08g21280 pycom15g38820
rosa_chinensis	RchiOBHm_Chr7g0241141
rosa_laevigata	RLG00000000592
rosa_multiflora	Rmu_sc0006665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219230
rosa_rugosa	Rorug07G0343100 Rorug07G0343200 Rorug07G0343300 Rorug07G0343400.1 Rorug07G0343500.1
rosa_samantha	Rh7AG498100 Rh7BG468700 Rh7CG514800 Rh7DG482200
rosa_wichuraiana	Rw7G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	654
AccII	CGCG	2 cut(s)	145, 551
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	7 cut(s)	171, 400, 403, 551, 562, 577, 755
AclWI	GGATC	3 cut(s)	346, 553, 566
AcoI	YGGCCR	1 cut(s)	234
AcvI	CACGTG	2 cut(s)	421, 520
AfaI	GTAC	2 cut(s)	425, 530
AfiI	CCNNNNNNNGG	3 cut(s)	232, 487, 678
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	694, 706
AhdI	GACNNNNNGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	2 cut(s)	618, 750
AluI	AGCT	2 cut(s)	618, 750
Alw21I	GWGCWC	4 cut(s)	36, 444, 519, 525
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	3 cut(s)	346, 553, 566
AlwNI	CAGNNNCTG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	4 cut(s)	234, 311, 327, 579
ApaI	GGGCCC	1 cut(s)	315
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	666
AspLEI	GCGC	3 cut(s)	147, 496, 551
AspS9I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 758
AsuC2I	CCSGG	3 cut(s)	310, 488, 658
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	660, 758
BaeGI	GKGCMC	2 cut(s)	315, 519
BamHI	GGATCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	497
BbrPI	CACGTG	2 cut(s)	421, 520
BbsI	GAAGAC	2 cut(s)	328, 694
Bbv12I	GWGCWC	4 cut(s)	36, 444, 519, 525
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	2 cut(s)	263, 678
BceAI	ACGGC	4 cut(s)	221, 566, 608, 683
BciT130I	CCWGG	1 cut(s)	568
BcnI	CCSGG	3 cut(s)	310, 488, 658
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	654
BisI	GCNGC	2 cut(s)	403, 667
BlsI	GCNGC	2 cut(s)	404, 668
Bme1390I	CCNGG	4 cut(s)	310, 488, 568, 658
Bme18I	GGWCC	2 cut(s)	660, 758
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgT120I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 758
BmiI	GGNNCC	7 cut(s)	313, 314, 394, 464, 560, 661, 759
BmrFI	CCNGG	4 cut(s)	310, 488, 568, 658
BmsI	GCATC	2 cut(s)	51, 627
BpiI	GAAGAC	2 cut(s)	328, 694
BpuMI	CCSGG	3 cut(s)	310, 488, 658
BsaAI	YACGTR	2 cut(s)	421, 520
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 487, 678
Bse1I	ACTGG	3 cut(s)	26, 475, 604
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BseLI	CCNNNNNNNGG	3 cut(s)	232, 487, 678
BseMII	CTCAG	2 cut(s)	204, 400
BseNI	ACTGG	3 cut(s)	26, 475, 604
BseSI	GKGCMC	2 cut(s)	315, 519
BseXI	GCAGC	1 cut(s)	653
Bsh1236I	CGCG	2 cut(s)	145, 551
BshFI	GGCC	4 cut(s)	236, 313, 329, 581
BsiHKAI	GWGCWC	4 cut(s)	36, 444, 519, 525
BsiSI	CCGG	5 cut(s)	309, 488, 657, 663, 672
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	232, 487, 678
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	236, 313, 329, 581
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	5 cut(s)	36, 315, 444, 519, 525
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	2 cut(s)	351, 558
BspACI	CCGC	7 cut(s)	171, 400, 403, 551, 562, 577, 755
BspANI	GGCC	4 cut(s)	236, 313, 329, 581
BspCNI	CTCAG	2 cut(s)	203, 399
BspEI	TCCGGA	1 cut(s)	671
BspFNI	CGCG	2 cut(s)	145, 551
BspHI	TCATGA	1 cut(s)	776
BspLI	GGNNCC	7 cut(s)	313, 314, 394, 464, 560, 661, 759
BspMI	ACCTGC	1 cut(s)	654
BspPI	GGATC	3 cut(s)	346, 553, 566
BspQI	GCTCTTC	1 cut(s)	740
BsrI	ACTGG	3 cut(s)	26, 475, 604
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	2 cut(s)	351, 558
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	5 cut(s)	98, 323, 380, 731, 740
BstBAI	YACGTR	2 cut(s)	421, 520
BstC8I	GCNNGC	2 cut(s)	244, 579
BstDEI	CTNAG	2 cut(s)	190, 386
BstF5I	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BstFNI	CGCG	2 cut(s)	145, 551
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	147, 496, 551
BstKTI	GATC	2 cut(s)	354, 561
BstMBI	GATC	2 cut(s)	351, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 399, 646
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	4 cut(s)	308, 486, 566, 656
BstSLI	GKGCMC	2 cut(s)	315, 519
BstUI	CGCG	2 cut(s)	145, 551
BstV1I	GCAGC	1 cut(s)	653
BstV2I	GAAGAC	2 cut(s)	328, 694
BstX2I	RGATCY	2 cut(s)	351, 558
BstYI	RGATCY	2 cut(s)	351, 558
BsuRI	GGCC	4 cut(s)	236, 313, 329, 581
BtsCI	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	244, 579
CaiI	CAGNNNCTG	1 cut(s)	481
CciI	TCATGA	1 cut(s)	776
CfoI	GCGC	3 cut(s)	147, 496, 551
Cfr13I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 758
Csp6I	GTAC	2 cut(s)	424, 529
CviAII	CATG	6 cut(s)	57, 232, 448, 526, 740, 777
CviQI	GTAC	2 cut(s)	424, 529
DdeI	CTNAG	2 cut(s)	190, 386
DpnI	GATC	2 cut(s)	353, 560
DpnII	GATC	2 cut(s)	351, 558
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	5 cut(s)	98, 323, 380, 731, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	5 cut(s)	98, 323, 380, 731, 740
EciI	GGCGGA	2 cut(s)	389, 551
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	660, 758
Eco72I	CACGTG	2 cut(s)	421, 520
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	6 cut(s)	60, 235, 451, 529, 743, 780
FaiI	YATR	8 cut(s)	58, 233, 449, 527, 679, 741, 753, 778
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	6 cut(s)	56, 231, 447, 525, 739, 776
FauI	CCCGC	3 cut(s)	178, 570, 748
Fnu4HI	GCNGC	2 cut(s)	403, 667
FokI	GGATG	6 cut(s)	29, 86, 242, 368, 649, 696
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	403, 667
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	3 cut(s)	146, 495, 550
GluI	GCNGC	2 cut(s)	403, 667
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	236, 313, 329, 581
HapII	CCGG	5 cut(s)	309, 488, 657, 663, 672
HhaI	GCGC	3 cut(s)	147, 496, 551
Hin1II	CATG	6 cut(s)	60, 235, 451, 529, 743, 780
Hin6I	GCGC	3 cut(s)	145, 494, 549
HinP1I	GCGC	3 cut(s)	145, 494, 549
HpaII	CCGG	5 cut(s)	309, 488, 657, 663, 672
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	424, 517
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	3 cut(s)	499, 672, 777
Hpy8I	GTNNAC	2 cut(s)	424, 517
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	3 cut(s)	333, 420, 519
HpyCH4V	TGCA	3 cut(s)	246, 517, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 399, 646
HpyF3I	CTNAG	2 cut(s)	190, 386
HpySE526I	ACGT	3 cut(s)	333, 420, 519
Hsp92II	CATG	6 cut(s)	60, 235, 451, 529, 743, 780
HspAI	GCGC	3 cut(s)	145, 494, 549
Kpn2I	TCCGGA	1 cut(s)	671
Kzo9I	GATC	2 cut(s)	351, 558
LguI	GCTCTTC	1 cut(s)	740
LmnI	GCTCC	3 cut(s)	398, 468, 674
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	51, 627
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	333, 420, 519
MaeIII	GTNAC	2 cut(s)	499, 583
MalI	GATC	2 cut(s)	353, 560
MboI	GATC	2 cut(s)	351, 558
MboII	GAAGA	8 cut(s)	85, 310, 313, 328, 367, 694, 718, 757
MflI	RGATCY	2 cut(s)	351, 558
MhlI	GDGCHC	5 cut(s)	36, 315, 444, 519, 525
MmeI	TCCRAC	1 cut(s)	614
MroI	TCCGGA	1 cut(s)	671
MspI	CCGG	5 cut(s)	309, 488, 657, 663, 672
MspR9I	CCNGG	4 cut(s)	310, 488, 568, 658
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	2 cut(s)	145, 551
MwoI	GCNNNNNNNGC	3 cut(s)	31, 399, 646
NciI	CCSGG	3 cut(s)	310, 488, 658
NdeII	GATC	2 cut(s)	351, 558
NlaIII	CATG	6 cut(s)	60, 235, 451, 529, 743, 780
NlaIV	GGNNCC	7 cut(s)	313, 314, 394, 464, 560, 661, 759
NmuCI	GTSAC	2 cut(s)	499, 583
PagI	TCATGA	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	404, 668
PmaCI	CACGTG	2 cut(s)	421, 520
PmlI	CACGTG	2 cut(s)	421, 520
Ppu21I	YACGTR	2 cut(s)	421, 520
Psp6I	CCWGG	1 cut(s)	566
PspCI	CACGTG	2 cut(s)	421, 520
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	7 cut(s)	313, 314, 394, 464, 560, 661, 759
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 758
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	351, 558
RsaI	GTAC	2 cut(s)	425, 530
RsaNI	GTAC	2 cut(s)	424, 529
SapI	GCTCTTC	1 cut(s)	740
SatI	GCNGC	2 cut(s)	403, 667
Sau3AI	GATC	2 cut(s)	351, 558
Sau96I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 758
ScrFI	CCNGG	4 cut(s)	310, 488, 568, 658
SduI	GDGCHC	5 cut(s)	36, 315, 444, 519, 525
SfaNI	GCATC	2 cut(s)	51, 627
SinI	GGWCC	2 cut(s)	660, 758
SsiI	CCGC	7 cut(s)	171, 400, 403, 551, 562, 577, 755
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	308, 486, 566, 656
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	3 cut(s)	336, 423, 522
TaqI	TCGA	2 cut(s)	357, 366
TauI	GCSGC	1 cut(s)	405
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	499, 583
TseI	GCWGC	1 cut(s)	666
Tsp45I	GTSAC	2 cut(s)	499, 583
TspDTI	ATGAA	3 cut(s)	17, 367, 728
TspGWI	ACGGA	3 cut(s)	77, 502, 602
TspRI	CASTG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	660, 758
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.