Rorug07G0347300

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
38487758 .. 38490159
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0347300.1

Sequence Viewer

Length: 1674 bp
ATGGGTTTATTGAAATACTGGGGAACGATTGAACAATTCTTGTGGCTCAGTTGTCCAACCAGGTGCCCTTATAGTAATGAAAAGAAACACGTTATCATGGAGCCCAAGTGTGAGTTGGGAGCAATGACAAGTTCTCATGTTCTAGGAACTTCTAGTGAGAGTATCATCATCGACAGATTTAGTGATCTCCCAGATGAAATTGCTCATCACATTCTTTCCTTCCACTGTGGCATCTTAATGAACCTCATCCGAGTGGGCGCAGTGTCCAAGAGATGCAGACAACTTTATCTATCACTTCCGTCTTTGATTATTGTTTCAGGTCATGTTTCAAACTGCACCAGGTCGAGAGTAAGGTTGATGAATTATTGGGACAGGTACTTGTTTCATCGTGGTGATAATAAGATAGAGTGCTTTGGCGTTTGCTGGTCTTTCGATGCCGCAGTCAATGCAGAGATAAGTGATGAGTTTTTTCGAATCACCACGTGGATCCAAAATGCAGTAAGGTGTAATGTTAAAGTGCTTCACCTTGAATTCACTCAAAACAACTTGAATATAGTTGTGTTACCATCTTGCATCTTTCATTGTCATTCTTTGACGGAACTCTATGTGAACTTGAGTGGGGGTGATATTCAATCACCCTCCTTGTCTTTTTCAAGTAATCTCCAGCACTTGGAGTTGAAGGATGCTATGGTTGAAGATGACCGGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTTAGTGGAATAAAAGATATCACGATTGAGAGCTCGTCTTTGGAAATATTTATTTATCTGTTTCCTTTTAACAATTATGAGCTCTGGGATCTTAACATTTCAGGGGAGAAACTTGAAGAAATAATAATACTTTGGCATTTTGATTCGAATGATGATTCAAGACGTGGTCTTATACCTCGCATCAGGTCGCTAAATATTCTCGCCCCAAAGCTTAAAAAGATCACGTGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTGATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCCGACTTAGATGACTTCAATAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGTTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACGATTAGATAATATTCATGACTTGACTTTACATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTCTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAACTGAGGAAGAGGATAATAATTATGAGGAAGAGGACAACGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCTTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATAATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCGGATATTTTGGAAATGCATGTGACACTTAATTTGGATGAAGGGACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

64.11

Weight (kDa)

4.91

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 160 - 334 1.1e-09 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 501 - 534 3.5e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 670
AccII CGCG 1 cut(s) 1113
AccIII TCCGGA 1 cut(s) 1621
AciI CCGC 2 cut(s) 438, 1613
AclWI GGATC 4 cut(s) 481, 494, 858, 1014
AcsI RAATTY 1 cut(s) 530
AcvI CACGTG 2 cut(s) 483, 987
AdeI CACNNNGTG 1 cut(s) 483
AfaI GTAC 2 cut(s) 377, 1562
AfiI CCNNNNNNNGG 3 cut(s) 670, 1093, 1249
AflIII ACRYGT 2 cut(s) 88, 1213
AgeI ACCGGT 1 cut(s) 702
AjiI CACGTC 1 cut(s) 926
AjnI CCWGG 2 cut(s) 59, 338
AluBI AGCT 6 cut(s) 795, 844, 973, 1046, 1124, 1501
AluI AGCT 6 cut(s) 795, 844, 973, 1046, 1124, 1501
Alw21I GWGCWC 2 cut(s) 797, 846
Alw26I GTCTC 3 cut(s) 1136, 1258, 1397
AlwI GGATC 4 cut(s) 481, 494, 858, 1014
Aor13HI TCCGGA 1 cut(s) 1621
ApeKI GCWGC 1 cut(s) 1615
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 4 cut(s) 692, 724, 1636, 1668
AsiGI ACCGGT 1 cut(s) 702
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 8 cut(s) 404, 469, 515, 627, 635, 1522, 1602, 1609
AsuII TTCGAA 3 cut(s) 472, 711, 908
BaeGI GKGCMC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 3 cut(s) 105, 797, 846
BbrPI CACGTG 2 cut(s) 483, 987
Bbv12I GWGCWC 2 cut(s) 797, 846
BbvI GCAGC 1 cut(s) 1627
BccI CCATC 2 cut(s) 574, 1412
BciT130I CCWGG 2 cut(s) 61, 340
BcoDI GTCTC 3 cut(s) 1136, 1258, 1397
BfaI CTAG 2 cut(s) 143, 153
BfmI CTRYAG 2 cut(s) 1102, 1407
BisI GCNGC 2 cut(s) 438, 1616
BlsI GCNGC 2 cut(s) 439, 1617
Bme1390I CCNGG 2 cut(s) 61, 340
BmgBI CACGTC 1 cut(s) 926
BmiI GGNNCC 3 cut(s) 65, 102, 488
BmrFI CCNGG 2 cut(s) 61, 340
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BpmI CTGGAG 3 cut(s) 647, 1538, 1589
Bpu14I TTCGAA 3 cut(s) 472, 711, 908
BpuEI CTTGAG 1 cut(s) 634
BsaAI YACGTR 2 cut(s) 483, 987
BsaI GGTCTC 1 cut(s) 1258
BsaWI WCCGGW 2 cut(s) 702, 1621
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 670, 1093, 1249
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 2 cut(s) 23, 1521
Bse3DI GCAATG 2 cut(s) 129, 1254
BseAI TCCGGA 1 cut(s) 1621
BseBI CCWGG 2 cut(s) 61, 340
BseGI GGATG 5 cut(s) 246, 688, 1423, 1618, 1663
BseLI CCNNNNNNNGG 3 cut(s) 670, 1093, 1249
BseMI GCAATG 2 cut(s) 129, 1254
BseMII CTCAG 5 cut(s) 61, 1335, 1377, 1419, 1592
BseNI ACTGG 2 cut(s) 23, 1521
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 1627
BseYI CCCAGC 1 cut(s) 1243
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 1113
BshNI GGYRCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 797, 846
BsiSI CCGG 2 cut(s) 703, 1622
BslFI GGGAC 2 cut(s) 383, 1226
BslI CCNNNNNNNGG 3 cut(s) 670, 1093, 1249
BsmAI GTCTC 3 cut(s) 1136, 1258, 1397
BsmFI GGGAC 2 cut(s) 383, 1226
Bso31I GGTCTC 1 cut(s) 1258
Bsp119I TTCGAA 3 cut(s) 472, 711, 908
Bsp1286I GDGCHC 4 cut(s) 68, 105, 797, 846
Bsp13I TCCGGA 1 cut(s) 1621
Bsp143I GATC 5 cut(s) 184, 486, 850, 981, 1006
BspACI CCGC 2 cut(s) 438, 1613
BspCNI CTCAG 5 cut(s) 60, 1336, 1378, 1420, 1591
BspEI TCCGGA 1 cut(s) 1621
BspFNI CGCG 1 cut(s) 1113
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 65, 102, 488
BspMAI CTGCAG 1 cut(s) 1106
BspPI GGATC 4 cut(s) 481, 494, 858, 1014
BspT104I TTCGAA 3 cut(s) 472, 711, 908
BspT107I GGYRCC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 1258
BsrDI GCAATG 2 cut(s) 129, 1254
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 2 cut(s) 23, 1521
BssAI RCCGGY 1 cut(s) 702
BssMI GATC 5 cut(s) 184, 486, 850, 981, 1006
Bst2UI CCWGG 2 cut(s) 61, 340
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 4 cut(s) 1134, 1344, 1365, 1407
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBAI YACGTR 2 cut(s) 483, 987
BstBI TTCGAA 3 cut(s) 472, 711, 908
BstC8I GCNNGC 2 cut(s) 1317, 1575
BstDEI CTNAG 8 cut(s) 47, 1036, 1047, 1069, 1344, 1386, 1428, 1578
BstF5I GGATG 5 cut(s) 246, 688, 1423, 1618, 1663
BstFNI CGCG 1 cut(s) 1113
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 5 cut(s) 187, 489, 853, 984, 1009
BstMAI GTCTC 3 cut(s) 1136, 1258, 1397
BstMBI GATC 5 cut(s) 184, 486, 850, 981, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 446, 1110
BstNI CCWGG 2 cut(s) 61, 340
BstNSI RCATGY 3 cut(s) 1217, 1577, 1643
BstSCI CCNGG 2 cut(s) 59, 338
BstSFI CTRYAG 2 cut(s) 1102, 1407
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 1 cut(s) 1113
BstV1I GCAGC 1 cut(s) 1627
BstX2I RGATCY 2 cut(s) 486, 850
BstYI RGATCY 2 cut(s) 486, 850
BtrI CACGTC 1 cut(s) 926
BtsCI GGATG 5 cut(s) 246, 688, 1423, 1618, 1663
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 223, 267
Cac8I GCNNGC 2 cut(s) 1317, 1575
CciI TCATGA 1 cut(s) 1198
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 702
CsiI ACCWGGT 2 cut(s) 59, 338
Csp6I GTAC 2 cut(s) 376, 1561
CspAI ACCGGT 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 8 cut(s) 97, 137, 323, 1162, 1199, 1214, 1574, 1640
CviJI RGCY 9 cut(s) 46, 103, 795, 844, 973, 1046, 1124, 1154, 1501
CviKI_1 RGCY 9 cut(s) 46, 103, 795, 844, 973, 1046, 1124, 1154, 1501
CviQI GTAC 2 cut(s) 376, 1561
DdeI CTNAG 8 cut(s) 47, 1036, 1047, 1069, 1344, 1386, 1428, 1578
DpnI GATC 5 cut(s) 186, 488, 852, 983, 1008
DpnII GATC 5 cut(s) 184, 486, 850, 981, 1006
DraIII CACNNNGTG 1 cut(s) 483
Eam1104I CTCTTC 4 cut(s) 1134, 1344, 1365, 1407
EarI CTCTTC 4 cut(s) 1134, 1344, 1365, 1407
Ecl136II GAGCTC 2 cut(s) 795, 844
Eco24I GRGCYC 3 cut(s) 105, 797, 846
Eco31I GGTCTC 1 cut(s) 1258
Eco32I GATATC 2 cut(s) 720, 781
Eco53kI GAGCTC 2 cut(s) 795, 844
Eco72I CACGTG 2 cut(s) 483, 987
EcoICRI GAGCTC 2 cut(s) 795, 844
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 59, 338
EcoRV GATATC 2 cut(s) 720, 781
EcoT22I ATGCAT 3 cut(s) 740, 1295, 1641
EcoT38I GRGCYC 3 cut(s) 105, 797, 846
FaeI CATG 8 cut(s) 100, 140, 326, 1165, 1202, 1217, 1577, 1643
FaqI GGGAC 2 cut(s) 383, 1226
FatI CATG 8 cut(s) 96, 136, 322, 1161, 1198, 1213, 1573, 1639
Fnu4HI GCNGC 2 cut(s) 438, 1616
FokI GGATG 5 cut(s) 233, 695, 1430, 1605, 1670
FriOI GRGCYC 3 cut(s) 105, 797, 846
Fsp4HI GCNGC 2 cut(s) 438, 1616
FspBI CTAG 2 cut(s) 143, 153
GlaI GCGC 1 cut(s) 259
GluI GCNGC 2 cut(s) 438, 1616
GsaI CCCAGC 1 cut(s) 1247
GsuI CTGGAG 3 cut(s) 647, 1538, 1589
HapII CCGG 2 cut(s) 703, 1622
HhaI GCGC 1 cut(s) 260
Hin1II CATG 8 cut(s) 100, 140, 326, 1165, 1202, 1217, 1577, 1643
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 6 cut(s) 474, 905, 917, 1269, 1600, 1666
HpaII CCGG 2 cut(s) 703, 1622
HphI GGTGA 8 cut(s) 404, 469, 515, 627, 635, 1522, 1602, 1609
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 3 cut(s) 251, 1265, 1581
Hpy188III TCNNGA 8 cut(s) 345, 755, 784, 921, 1004, 1199, 1568, 1622
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 4 cut(s) 229, 673, 1427, 1655
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 6 cut(s) 90, 482, 751, 925, 986, 1298
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 1110
HpyF3I CTNAG 8 cut(s) 47, 1036, 1047, 1069, 1344, 1386, 1428, 1578
HpySE526I ACGT 6 cut(s) 90, 482, 751, 925, 986, 1298
Hsp92II CATG 8 cut(s) 100, 140, 326, 1165, 1202, 1217, 1577, 1643
HspAI GCGC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 1621
Kzo9I GATC 5 cut(s) 184, 486, 850, 981, 1006
LmnI GCTCC 4 cut(s) 100, 119, 1450, 1570
Lsp1109I GCAGC 1 cut(s) 1627
MabI ACCWGGT 2 cut(s) 59, 338
MaeI CTAG 2 cut(s) 143, 153
MaeII ACGT 6 cut(s) 90, 482, 751, 925, 986, 1298
MaeIII GTNAC 3 cut(s) 561, 1303, 1642
MalI GATC 5 cut(s) 186, 488, 852, 983, 1008
MboI GATC 5 cut(s) 184, 486, 850, 981, 1006
MfeI CAATTG 1 cut(s) 1320
MflI RGATCY 2 cut(s) 486, 850
MhlI GDGCHC 4 cut(s) 68, 105, 797, 846
MlyI GAGTC 1 cut(s) 1660
MmeI TCCRAC 1 cut(s) 80
Mph1103I ATGCAT 3 cut(s) 740, 1295, 1641
MroI TCCGGA 1 cut(s) 1621
MseI TTAA 8 cut(s) 236, 513, 831, 855, 975, 1119, 1485, 1650
MslI CAYNNNNRTG 3 cut(s) 236, 251, 390
MspI CCGG 2 cut(s) 703, 1622
MspR9I CCNGG 2 cut(s) 61, 340
MunI CAATTG 1 cut(s) 1320
MvaI CCWGG 2 cut(s) 61, 340
MvnI CGCG 1 cut(s) 1113
MwoI GCNNNNNNNGC 2 cut(s) 446, 1110
NdeII GATC 5 cut(s) 184, 486, 850, 981, 1006
NlaIII CATG 8 cut(s) 100, 140, 326, 1165, 1202, 1217, 1577, 1643
NlaIV GGNNCC 3 cut(s) 65, 102, 488
NmuCI GTSAC 2 cut(s) 1303, 1642
NsiI ATGCAT 3 cut(s) 740, 1295, 1641
NspI RCATGY 3 cut(s) 1217, 1577, 1643
NspV TTCGAA 3 cut(s) 472, 711, 908
PaeI GCATGC 1 cut(s) 1577
PagI TCATGA 1 cut(s) 1198
PciI ACATGT 1 cut(s) 1213
PfeI GAWTC 5 cut(s) 474, 905, 917, 1269, 1600
PflFI GACNNNGTC 2 cut(s) 927, 1238
PflMI CCANNNNNTGG 1 cut(s) 670
PinAI ACCGGT 1 cut(s) 702
PkrI GCNGC 2 cut(s) 439, 1617
PleI GAGTC 1 cut(s) 1660
PmaCI CACGTG 2 cut(s) 483, 987
PmlI CACGTG 2 cut(s) 483, 987
PpsI GAGTC 1 cut(s) 1660
Ppu21I YACGTR 2 cut(s) 483, 987
PscI ACATGT 1 cut(s) 1213
Psp124BI GAGCTC 2 cut(s) 797, 846
Psp6I CCWGG 2 cut(s) 59, 338
PspCI CACGTG 2 cut(s) 483, 987
PspFI CCCAGC 1 cut(s) 1243
PspGI CCWGG 2 cut(s) 59, 338
PspN4I GGNNCC 3 cut(s) 65, 102, 488
PstI CTGCAG 1 cut(s) 1106
PsuI RGATCY 2 cut(s) 486, 850
PsyI GACNNNGTC 2 cut(s) 927, 1238
RsaI GTAC 2 cut(s) 377, 1562
RsaNI GTAC 2 cut(s) 376, 1561
RseI CAYNNNNRTG 3 cut(s) 236, 251, 390
SacI GAGCTC 2 cut(s) 797, 846
SaqAI TTAA 8 cut(s) 236, 513, 831, 855, 975, 1119, 1485, 1650
SatI GCNGC 2 cut(s) 438, 1616
Sau3AI GATC 5 cut(s) 184, 486, 850, 981, 1006
SchI GAGTC 1 cut(s) 1660
ScrFI CCNGG 2 cut(s) 61, 340
SduI GDGCHC 4 cut(s) 68, 105, 797, 846
SexAI ACCWGGT 2 cut(s) 59, 338
SfcI CTRYAG 2 cut(s) 1102, 1407
SfuI TTCGAA 3 cut(s) 472, 711, 908
SmiMI CAYNNNNRTG 3 cut(s) 236, 251, 390
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
SphI GCATGC 1 cut(s) 1577
SsiI CCGC 2 cut(s) 438, 1613
SspI AATATT 4 cut(s) 810, 958, 1195, 1466
SspMI CTAG 2 cut(s) 143, 153
SstI GAGCTC 2 cut(s) 797, 846
StyD4I CCNGG 2 cut(s) 59, 338
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 6 cut(s) 93, 485, 754, 928, 989, 1301
TaqI TCGA 7 cut(s) 171, 344, 432, 472, 711, 908, 1172
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 5 cut(s) 474, 905, 917, 1269, 1600
Tru1I TTAA 8 cut(s) 236, 513, 831, 855, 975, 1119, 1485, 1650
Tru9I TTAA 8 cut(s) 236, 513, 831, 855, 975, 1119, 1485, 1650
TscAI CASTG 2 cut(s) 230, 267
TseFI GTSAC 2 cut(s) 1303, 1642
TseI GCWGC 1 cut(s) 1615
Tsp45I GTSAC 2 cut(s) 1303, 1642
TspGWI ACGGA 3 cut(s) 288, 611, 1395
TspRI CASTG 2 cut(s) 230, 267
Tth111I GACNNNGTC 2 cut(s) 927, 1238
Van91I CCANNNNNTGG 1 cut(s) 670
XapI RAATTY 1 cut(s) 530
XceI RCATGY 3 cut(s) 1217, 1577, 1643
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 1456
XspI CTAG 2 cut(s) 143, 153
Zsp2I ATGCAT 3 cut(s) 740, 1295, 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.