Rh1CG298100

General transcription factor IIF subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013034
Physical Location & Seq
Reverse (-)
57277192 .. 57279988
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG298100.1

Sequence Viewer

Length: 891 bp
ATGGCGCCAAGCCAAATAGGAATGGAAGACCAAAAACCACAACGAACTAGTAGCACTAGTAATAGTGGTGCCAACAACAACAACAGCAACAAAAATTTGAGGGGGCATTTGGAGACGAAAAGCAAAGAAAATTGGGGGCATTTGGAGACGAGCAAAGCAGCGGAGCCAGTGTGGCTTATGAAATGCCCTCCCAACGTCGCCAAAGCGTTTAAGCCAGACGGCGGCTCCGTCACCGCAGAGGAGCCTTGTCCTTCCGGCCCTGTCGCCAAGGTCATCCTCTCCCTTGACCCTCTCAACTCCAATAACGAACCTAAGTTTACCATGGAACTGGCGGCCACTGAATCTGCAAATACCCCCAAGTGTTACGTTTTGGATATGTCCAGGGACTTCATTCCAATGTCTGTGTTTTCAGAGTCGTCAGAAGGAAAGTTATCTGTGGAGGGGAAAATCTTCAACAAATTTGACATGAAGCCCCATGATGAGAATCTTGAGAATTATGGGAAACTTTGCCGTGAACGAACAAAAAAGCATATGAAAAGTAGAAAGATTCAGGTGATCGACAATGACAATGGGGCACATATGAGGCCTATGCCAGGGATGATTGGTTTTGTGGTTCCTGGACCCAGTGACAAGAAGAAAGCGCCAACTAAGGGATCAGAAATGAAGAGAACAAGGAGGGACCGTGGAGAAATGGAACATATTATGTTTAAGCTCTTTGAAAGGCAACCTAATTGGACTTTAAGACAATTGATCCAAGAGACAGATCAACCCGAACAATTTCTGAAAGACATACTTAAGGACCTCTCTGTTTACAACAACAAGGGAGCTAATCAAGGCACTTACGAGCTGAAACCTGAATACAGGAGAACAGGCCAGGAGCCAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005674 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006368 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008152 GO:0008380 GO:0008543 GO:0009058 GO:0009059 GO:0009301 GO:0009452 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015630 GO:0016070 GO:0016071 GO:0016073 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0032993 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0036260 GO:0042221 GO:0042795 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0060260 GO:0060261 GO:0061695 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0090575 GO:0097550 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIIF_beta

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

8.98

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIF_beta PF02270 225 - 288 3.5e-18 TFIIF, beta subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52270
fragaria_vesca FvH4_7g19881
malus_domestica MD01G1111000.v1.1 MD07G1177200.v1.1
prunus_persica Prupe.2G215900_v2.0.a1
pyrus_communis pycom07g17120
rosa_chinensis RchiOBHm_Chr1g0363871
rosa_laevigata RLG00000027539
rosa_multiflora Rmu_sc0002483.1_g000003
rosa_roxburghii Rroxscaffold_4G00292900
rosa_rugosa Rorug01G0310400 Rorug01G0310500 Rorug01G0310600
rosa_samantha Rh1AG318500 Rh1BG281700 Rh1CG298100 Rh1DG313000
rosa_wichuraiana Rw1G028270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 68
AciI CCGC 4 cut(s) 161, 222, 234, 332
AclWI GGATC 2 cut(s) 661, 745
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 94, 458
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 221, 593, 650
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 2 cut(s) 454, 719
AhlI ACTAGT 2 cut(s) 47, 56
AjnI CCWGG 4 cut(s) 380, 592, 616, 873
AluBI AGCT 4 cut(s) 712, 827, 847, 884
AluI AGCT 4 cut(s) 712, 827, 847, 884
Alw26I GTCTC 3 cut(s) 107, 140, 752
AlwI GGATC 2 cut(s) 661, 745
AoxI GGCC 4 cut(s) 256, 333, 584, 871
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 94, 458
Asp700I GAANNNNTTC 2 cut(s) 449, 777
AspLEI GCGC 2 cut(s) 7, 643
AspS9I GGNCC 4 cut(s) 257, 620, 679, 799
AsuHPI GGTGA 2 cut(s) 223, 565
AvaII GGWCC 3 cut(s) 620, 679, 799
BaeGI GKGCMC 1 cut(s) 577
BanI GGYRCC 2 cut(s) 4, 68
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 235, 495
BciT130I CCWGG 4 cut(s) 382, 594, 618, 875
BcoDI GTCTC 3 cut(s) 107, 140, 752
BcuI ACTAGT 2 cut(s) 47, 56
BfaI CTAG 2 cut(s) 48, 57
BfoI RGCGCY 2 cut(s) 8, 644
BfrI CTTAAG 1 cut(s) 794
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 3 cut(s) 159, 223, 333
BlsI GCNGC 3 cut(s) 160, 224, 334
Bme1390I CCNGG 4 cut(s) 382, 594, 618, 875
Bme18I GGWCC 3 cut(s) 620, 679, 799
BmgT120I GGNCC 4 cut(s) 257, 620, 679, 799
BmiI GGNNCC 9 cut(s) 6, 70, 165, 226, 243, 615, 622, 680, 879
BmrFI CCNGG 4 cut(s) 382, 594, 618, 875
BmrI ACTGGG 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 267, 321, 381, 593, 682
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 209, 239, 667, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 593, 650
Bse1I ACTGG 3 cut(s) 167, 333, 624
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 4 cut(s) 382, 594, 618, 875
BseDI CCNNGG 5 cut(s) 267, 321, 381, 593, 682
BseGI GGATG 2 cut(s) 273, 603
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 221, 593, 650
BseNI ACTGG 3 cut(s) 167, 333, 624
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 4 cut(s) 258, 335, 586, 873
BshNI GGYRCC 2 cut(s) 4, 68
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 2 cut(s) 398, 692
BslI CCNNNNNNNGG 3 cut(s) 221, 593, 650
BsmAI GTCTC 3 cut(s) 107, 140, 752
BsmBI CGTCTC 2 cut(s) 107, 140
BsmFI GGGAC 2 cut(s) 398, 692
BsnI GGCC 4 cut(s) 258, 335, 586, 873
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 4 cut(s) 555, 653, 750, 763
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 4 cut(s) 161, 222, 234, 332
BspANI GGCC 4 cut(s) 258, 335, 586, 873
BspLI GGNNCC 9 cut(s) 6, 70, 165, 226, 243, 615, 622, 680, 879
BspPI GGATC 2 cut(s) 661, 745
BspT107I GGYRCC 2 cut(s) 4, 68
BspTI CTTAAG 1 cut(s) 794
BsrI ACTGG 3 cut(s) 167, 333, 624
BssECI CCNNGG 5 cut(s) 267, 321, 381, 593, 682
BssMI GATC 4 cut(s) 555, 653, 750, 763
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 267, 321
Bst2UI CCWGG 4 cut(s) 382, 594, 618, 875
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 659
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 2 cut(s) 312, 648
BstDSI CCRYGG 2 cut(s) 321, 682
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 273, 603
BstH2I RGCGCY 2 cut(s) 8, 644
BstHHI GCGC 2 cut(s) 7, 643
BstKTI GATC 4 cut(s) 558, 656, 753, 766
BstMAI GTCTC 3 cut(s) 107, 140, 752
BstMBI GATC 4 cut(s) 555, 653, 750, 763
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 4 cut(s) 382, 594, 618, 875
BstSCI CCNGG 4 cut(s) 380, 592, 616, 873
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuRI GGCC 4 cut(s) 258, 335, 586, 873
BtgI CCRYGG 2 cut(s) 321, 682
BtsCI GGATG 2 cut(s) 273, 603
BtsIMutI CAGTG 3 cut(s) 174, 336, 631
Cac8I GCNNGC 1 cut(s) 882
CfoI GCGC 2 cut(s) 7, 643
Cfr13I GGNCC 4 cut(s) 257, 620, 679, 799
CviAII CATG 3 cut(s) 322, 466, 476
DdeI CTNAG 2 cut(s) 312, 648
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 557, 655, 752, 765
DpnII GATC 4 cut(s) 555, 653, 750, 763
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 267, 321
Eco147I AGGCCT 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 620, 679, 799
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 4 cut(s) 380, 592, 616, 873
EcoT14I CCWWGG 2 cut(s) 267, 321
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 267, 321
Esp3I CGTCTC 2 cut(s) 107, 140
FaeI CATG 3 cut(s) 325, 469, 479
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 2 cut(s) 398, 692
FatI CATG 3 cut(s) 321, 465, 475
FauNDI CATATG 2 cut(s) 531, 579
Fnu4HI GCNGC 3 cut(s) 159, 223, 333
FokI GGATG 2 cut(s) 260, 610
Fsp4HI GCNGC 3 cut(s) 159, 223, 333
FspBI CTAG 2 cut(s) 48, 57
GlaI GCGC 2 cut(s) 6, 642
GluI GCNGC 3 cut(s) 159, 223, 333
HaeII RGCGCY 2 cut(s) 8, 644
HaeIII GGCC 4 cut(s) 258, 335, 586, 873
HapII CCGG 1 cut(s) 255
HhaI GCGC 2 cut(s) 7, 643
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 325, 469, 479
Hin6I GCGC 2 cut(s) 5, 641
HinP1I GCGC 2 cut(s) 5, 641
HinfI GANTC 4 cut(s) 341, 413, 484, 547
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 223, 565
Hpy166II GTNNAC 3 cut(s) 318, 515, 811
Hpy188I TCNGA 4 cut(s) 412, 421, 658, 783
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 3 cut(s) 318, 515, 811
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 261, 416
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 2 cut(s) 195, 366
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 312, 648
HpySE526I ACGT 2 cut(s) 195, 366
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 325, 469, 479
HspAI GCGC 2 cut(s) 5, 641
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 555, 653, 750, 763
LmnI GCTCC 5 cut(s) 163, 230, 241, 824, 877
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 48, 57
MaeII ACGT 2 cut(s) 195, 366
MaeIII GTNAC 3 cut(s) 229, 362, 626
MalI GATC 4 cut(s) 557, 655, 752, 765
MboI GATC 4 cut(s) 555, 653, 750, 763
MboII GAAGA 4 cut(s) 38, 442, 646, 676
MfeI CAATTG 1 cut(s) 746
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 7 cut(s) 94, 130, 458, 493, 730, 746, 776
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 9 cut(s) 93, 198, 232, 287, 300, 433, 576, 669, 812
MroXI GAANNNNTTC 2 cut(s) 449, 777
MseI TTAA 4 cut(s) 210, 708, 740, 795
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 4 cut(s) 382, 594, 618, 875
MunI CAATTG 1 cut(s) 746
MvaI CCWGG 4 cut(s) 382, 594, 618, 875
MwoI GCNNNNNNNGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 2 cut(s) 531, 579
NdeII GATC 4 cut(s) 555, 653, 750, 763
NlaIII CATG 3 cut(s) 325, 469, 479
NlaIV GGNNCC 9 cut(s) 6, 70, 165, 226, 243, 615, 622, 680, 879
NmuCI GTSAC 2 cut(s) 229, 626
PceI AGGCCT 1 cut(s) 586
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 2 cut(s) 449, 777
PfeI GAWTC 3 cut(s) 341, 484, 547
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 3 cut(s) 160, 224, 334
PleI GAGTC 1 cut(s) 421
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 4 cut(s) 380, 592, 616, 873
PspGI CCWGG 4 cut(s) 380, 592, 616, 873
PspN4I GGNNCC 9 cut(s) 6, 70, 165, 226, 243, 615, 622, 680, 879
PspPI GGNCC 4 cut(s) 257, 620, 679, 799
PspPPI RGGWCCY 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 4 cut(s) 210, 708, 740, 795
SatI GCNGC 3 cut(s) 159, 223, 333
Sau3AI GATC 4 cut(s) 555, 653, 750, 763
Sau96I GGNCC 4 cut(s) 257, 620, 679, 799
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 4 cut(s) 382, 594, 618, 875
SduI GDGCHC 1 cut(s) 577
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 3 cut(s) 620, 679, 799
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 488, 794
SmoI CTYRAG 2 cut(s) 488, 794
SpeI ACTAGT 2 cut(s) 47, 56
Sse9I AATT 7 cut(s) 94, 130, 458, 493, 730, 746, 776
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 4 cut(s) 161, 222, 234, 332
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 48, 57
StuI AGGCCT 1 cut(s) 586
StyD4I CCNGG 4 cut(s) 380, 592, 616, 873
StyI CCWWGG 2 cut(s) 267, 321
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 2 cut(s) 198, 369
TaqI TCGA 1 cut(s) 558
TasI AATT 7 cut(s) 94, 130, 458, 493, 730, 746, 776
TauI GCSGC 2 cut(s) 225, 335
TfiI GAWTC 3 cut(s) 341, 484, 547
Tru1I TTAA 4 cut(s) 210, 708, 740, 795
Tru9I TTAA 4 cut(s) 210, 708, 740, 795
TscAI CASTG 3 cut(s) 174, 343, 631
TseFI GTSAC 2 cut(s) 229, 626
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 2 cut(s) 229, 626
TspDTI ATGAA 5 cut(s) 194, 379, 482, 548, 677
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 3 cut(s) 174, 343, 631
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 3 cut(s) 620, 679, 799
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 2 cut(s) 94, 458
XmnI GAANNNNTTC 2 cut(s) 449, 777
XspI CTAG 2 cut(s) 48, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.