Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

7808772 .. 7811805

Gene Structure 3034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTTCTCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACCGACGATGACAAGATCAAGGCCGAGCTCTGGTTCGACTCCGCCACAACGTACGCCCCTTCCCGTGGTTTCTCCGTGTTTGCTGGTGTTGGAGAACGCACTCGTGAGGGCTAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGATACCAACCTACTTTAGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCCATTACTTCTGTCCAAGCTATTTATTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCGTCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

245

Amino Acids

26.68

Weight (kDa)

8.44

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	50 - 99	1.7e-10	ATP synthase alpha/beta family, nucleotide-binding domain
Helicase_C	PF00271	137 - 237	4.8e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	571
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	4 cut(s)	97, 359, 585, 675
AfiI	CCNNNNNNNGG	3 cut(s)	74, 109, 557
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	242, 400
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	6 cut(s)	72, 221, 290, 337, 381, 407
AluI	AGCT	6 cut(s)	72, 221, 290, 337, 381, 407
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	37, 490
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	2 cut(s)	11, 65
ApeKI	GCWGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	2 cut(s)	314, 330
AsuII	TTCGAA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	199, 659
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	515
BciVI	GTATCC	2 cut(s)	197, 197
BcnI	CCSGG	2 cut(s)	314, 330
BcoDI	GTCTC	2 cut(s)	37, 490
BfmI	CTRYAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	571
BfuI	GTATCC	2 cut(s)	197, 197
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	3 cut(s)	314, 330, 515
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	3 cut(s)	14, 271, 429
BmrFI	CCNGG	3 cut(s)	314, 330, 515
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	314, 330
BsaAI	YACGTR	1 cut(s)	587
BsaI	GGTCTC	2 cut(s)	37, 490
BsaJI	CCNNGG	2 cut(s)	108, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 109, 557
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	2 cut(s)	370, 639
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	108, 329
BseGI	GGATG	2 cut(s)	472, 541
BseLI	CCNNNNNNNGG	3 cut(s)	74, 109, 557
BseMI	GCAATG	2 cut(s)	370, 639
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	13, 67
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	314, 329
BsiWI	CGTACG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	74, 109, 557
BsmAI	GTCTC	2 cut(s)	37, 490
BsnI	GGCC	2 cut(s)	13, 67
Bso31I	GGTCTC	2 cut(s)	37, 490
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	59, 226, 524
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	13, 67
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	14, 271, 429
BspMAI	CTGCAG	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	305
BspTNI	GGTCTC	2 cut(s)	37, 490
BsrDI	GCAATG	2 cut(s)	370, 639
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	108, 329
BssMI	GATC	3 cut(s)	59, 226, 524
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	560, 678
Bst6I	CTCTTC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	162, 375, 489
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	472, 541
BstKTI	GATC	3 cut(s)	62, 229, 527
BstMAI	GTCTC	2 cut(s)	37, 490
BstMBI	GATC	3 cut(s)	59, 226, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	312, 328, 513
BstSFI	CTRYAG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuI	GTATCC	2 cut(s)	197, 197
BsuRI	GGCC	2 cut(s)	13, 67
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	472, 541
BveI	ACCTGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	4 cut(s)	96, 358, 584, 674
CspCI	CAANNNNNGTGG	3 cut(s)	622, 657, 711
CviAII	CATG	1 cut(s)	454
CviQI	GTAC	4 cut(s)	96, 358, 584, 674
DdeI	CTNAG	3 cut(s)	162, 375, 489
DpnI	GATC	3 cut(s)	61, 228, 526
DpnII	GATC	3 cut(s)	59, 226, 524
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	37, 490
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	1 cut(s)	457
FaiI	YATR	6 cut(s)	340, 416, 420, 455, 542, 736
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	2 cut(s)	479, 548
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	569
GluI	GCNGC	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	13, 67
HapII	CCGG	2 cut(s)	314, 329
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	2 cut(s)	82, 389
HpaII	CCGG	2 cut(s)	314, 329
Hpy188I	TCNGA	2 cut(s)	163, 203
Hpy188III	TCNNGA	6 cut(s)	148, 242, 386, 410, 445, 454
Hpy99I	CGWCG	2 cut(s)	52, 203
HpyAV	CCTTC	5 cut(s)	113, 259, 428, 515, 557
HpyCH4III	ACNGT	2 cut(s)	560, 678
HpyCH4IV	ACGT	2 cut(s)	94, 586
HpyCH4V	TGCA	2 cut(s)	568, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	3 cut(s)	162, 375, 489
HpySE526I	ACGT	2 cut(s)	94, 586
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	59, 226, 524
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	2 cut(s)	94, 586
MalI	GATC	3 cut(s)	61, 228, 526
MboI	GATC	3 cut(s)	59, 226, 524
MboII	GAAGA	5 cut(s)	15, 230, 509, 530, 545
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	307, 610
MlyI	GAGTC	2 cut(s)	76, 398
MmeI	TCCRAC	2 cut(s)	114, 181
MnlI	CCTC	5 cut(s)	144, 157, 227, 561, 609
MseI	TTAA	2 cut(s)	423, 686
MspI	CCGG	2 cut(s)	314, 329
MspR9I	CCNGG	3 cut(s)	314, 330, 515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	577
NciI	CCSGG	2 cut(s)	314, 330
NdeII	GATC	3 cut(s)	59, 226, 524
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	3 cut(s)	14, 271, 429
NmeAIII	GCCGAG	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	305
PagI	TCATGA	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
Pfl23II	CGTACG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	2 cut(s)	76, 397
PpsI	GAGTC	2 cut(s)	76, 397
Ppu21I	YACGTR	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspLI	CGTACG	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	14, 271, 429
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	570
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	4 cut(s)	97, 359, 585, 675
RsaNI	GTAC	4 cut(s)	96, 358, 584, 674
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	423, 686
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	3 cut(s)	59, 226, 524
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	76, 398
ScrFI	CCNGG	3 cut(s)	314, 330, 515
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	566
SfuI	TTCGAA	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	307, 610
SsiI	CCGC	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	312, 328, 513
TaaI	ACNGT	2 cut(s)	560, 678
TaiI	ACGT	2 cut(s)	97, 589
TaqI	TCGA	4 cut(s)	26, 80, 305, 411
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	307, 610
TatI	WGTACW	2 cut(s)	357, 673
Tru1I	TTAA	2 cut(s)	423, 686
Tru9I	TTAA	2 cut(s)	423, 686
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	21, 442
TspGWI	ACGGA	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.