Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

12622878 .. 12623884

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGCAAGCAAAGACTTGACTTGTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

4.53

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	88, 132, 158
AluI	AGCT	3 cut(s)	88, 132, 158
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	65, 81
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	2 cut(s)	65, 81
BcoDI	GTCTC	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	65, 81, 266
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	3 cut(s)	65, 81, 266
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	130, 277
BmuI	ACTGGG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	65, 81
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	121, 223, 292
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	65, 80
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	48, 311
Bst6I	CTCTTC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	333, 337
BstDEI	CTNAG	2 cut(s)	126, 240
BstF5I	GGATG	3 cut(s)	121, 223, 292
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	63, 79, 264
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	121, 223, 292
Cac8I	GCNNGC	2 cut(s)	333, 337
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	88, 132, 158, 264, 322
CviKI_1	RGCY	5 cut(s)	88, 132, 158, 264, 322
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	126, 240
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	91, 167, 171, 206, 293
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	3 cut(s)	108, 230, 299
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
HapII	CCGG	2 cut(s)	65, 80
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	22, 140
HpaII	CCGG	2 cut(s)	65, 80
HphI	GGTGA	1 cut(s)	44
Hpy188III	TCNNGA	5 cut(s)	26, 137, 161, 196, 205
HpyAV	CCTTC	3 cut(s)	179, 266, 308
HpyCH4III	ACNGT	2 cut(s)	48, 311
HpyCH4V	TGCA	2 cut(s)	319, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	126, 240
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	130, 277
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	260, 281, 296
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	16, 149
MnlI	CCTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	174
MspI	CCGG	2 cut(s)	65, 80
MspR9I	CCNGG	3 cut(s)	65, 81, 266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	2 cut(s)	65, 81
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	56
PagI	TCATGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	2 cut(s)	16, 148
PpsI	GAGTC	2 cut(s)	16, 148
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	16, 149
ScrFI	CCNGG	3 cut(s)	65, 81, 266
SetI	ASST	4 cut(s)	90, 134, 160, 184
SfaNI	GCATC	2 cut(s)	130, 277
SfcI	CTRYAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	58
StyD4I	CCNGG	3 cut(s)	63, 79, 264
TaaI	ACNGT	2 cut(s)	48, 311
TaqI	TCGA	2 cut(s)	56, 162
TasI	AATT	1 cut(s)	58
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.