Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Forward (+)

47761786 .. 47763338

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTGATGAAACGATTGGTGAAGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

5.94

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	68 - 168	2e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	152, 378, 468
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	43, 193
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	130, 174, 200
AluI	AGCT	3 cut(s)	130, 174, 200
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	107, 123
AsuHPI	GGTGA	2 cut(s)	31, 86
AsuII	TTCGAA	2 cut(s)	35, 98
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	65, 452
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	107, 123
BcoDI	GTCTC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	3 cut(s)	107, 123, 308
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	107, 123, 308
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	172, 319
BmuI	ACTGGG	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	35, 98
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	107, 123
BsaAI	YACGTR	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	163, 432
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	3 cut(s)	163, 265, 334
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	2 cut(s)	163, 432
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	107, 122
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	283
Bsp119I	TTCGAA	2 cut(s)	35, 98
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	2 cut(s)	35, 98
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	2 cut(s)	163, 432
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	90, 353, 471
Bst6I	CTCTTC	2 cut(s)	17, 351
BstAUI	TGTACA	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	380
BstBI	TTCGAA	2 cut(s)	35, 98
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	168, 282
BstF5I	GGATG	3 cut(s)	163, 265, 334
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	105, 121, 306
BstSFI	CTRYAG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	163, 265, 334
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	151, 377, 467
CspCI	CAANNNNNGTGG	3 cut(s)	415, 450, 504
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	6 cut(s)	130, 174, 200, 306, 364, 493
CviKI_1	RGCY	6 cut(s)	130, 174, 200, 306, 364, 493
CviQI	GTAC	3 cut(s)	151, 377, 467
DdeI	CTNAG	2 cut(s)	168, 282
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	17, 351
EarI	CTCTTC	2 cut(s)	17, 351
Eco31I	GGTCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	133, 209, 213, 248, 335, 529
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	3 cut(s)	150, 272, 341
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
HapII	CCGG	2 cut(s)	107, 122
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	2 cut(s)	64, 182
HpaII	CCGG	2 cut(s)	107, 122
HphI	GGTGA	2 cut(s)	31, 86
Hpy188III	TCNNGA	5 cut(s)	68, 179, 203, 238, 247
HpyAV	CCTTC	4 cut(s)	37, 221, 308, 350
HpyCH4III	ACNGT	3 cut(s)	90, 353, 471
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	361, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	168, 282
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	172, 319
MaeII	ACGT	1 cut(s)	379
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	4 cut(s)	34, 302, 323, 338
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	3 cut(s)	37, 100, 403
MlyI	GAGTC	2 cut(s)	58, 191
MnlI	CCTC	3 cut(s)	18, 354, 402
MseI	TTAA	2 cut(s)	216, 479
MspI	CCGG	2 cut(s)	107, 122
MspR9I	CCNGG	3 cut(s)	107, 123, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	107, 123
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	222
NspV	TTCGAA	2 cut(s)	35, 98
PagI	TCATGA	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	2 cut(s)	58, 190
PpsI	GAGTC	2 cut(s)	58, 190
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	3 cut(s)	152, 378, 468
RsaNI	GTAC	3 cut(s)	151, 377, 467
SaqAI	TTAA	2 cut(s)	216, 479
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	58, 191
ScrFI	CCNGG	3 cut(s)	107, 123, 308
SetI	ASST	8 cut(s)	48, 132, 176, 202, 226, 378, 382, 403
SfaNI	GCATC	2 cut(s)	172, 319
SfcI	CTRYAG	1 cut(s)	359
SfuI	TTCGAA	2 cut(s)	35, 98
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	37, 100, 403
StyD4I	CCNGG	3 cut(s)	105, 121, 306
TaaI	ACNGT	3 cut(s)	90, 353, 471
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	35, 98, 204
TasI	AATT	3 cut(s)	37, 100, 403
TatI	WGTACW	2 cut(s)	150, 466
Tru1I	TTAA	2 cut(s)	216, 479
Tru9I	TTAA	2 cut(s)	216, 479
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	23, 235
XapI	RAATTY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.