Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Forward (+)

51812381 .. 51814031

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

162

Amino Acids

17.86

Weight (kDa)

4.82

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	54 - 154	1.6e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	110, 336, 426
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	88, 132, 158
AluI	AGCT	3 cut(s)	88, 132, 158
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	65, 81
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	23, 410
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	2 cut(s)	65, 81
BcoDI	GTCTC	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	65, 81, 266
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	3 cut(s)	65, 81, 266
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	130, 277
BmuI	ACTGGG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	65, 81
BsaAI	YACGTR	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	2 cut(s)	121, 390
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	121, 223, 292
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	121, 390
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	65, 80
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	121, 390
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	48, 311, 429
Bst6I	CTCTTC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	126, 240
BstF5I	GGATG	3 cut(s)	121, 223, 292
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	63, 79, 264
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	121, 223, 292
BveI	ACCTGC	1 cut(s)	322
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	109, 335, 425
CspCI	CAANNNNNGTGG	3 cut(s)	373, 408, 462
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	88, 132, 158, 264, 322, 451
CviKI_1	RGCY	6 cut(s)	88, 132, 158, 264, 322, 451
CviQI	GTAC	3 cut(s)	109, 335, 425
DdeI	CTNAG	2 cut(s)	126, 240
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	208
FaiI	YATR	6 cut(s)	91, 167, 171, 206, 293, 487
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	3 cut(s)	108, 230, 299
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
HapII	CCGG	2 cut(s)	65, 80
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	22, 140
HpaII	CCGG	2 cut(s)	65, 80
HphI	GGTGA	1 cut(s)	44
Hpy188III	TCNNGA	5 cut(s)	26, 137, 161, 196, 205
HpyAV	CCTTC	3 cut(s)	179, 266, 308
HpyCH4III	ACNGT	3 cut(s)	48, 311, 429
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	319, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	126, 240
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	130, 277
MaeII	ACGT	1 cut(s)	337
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	260, 281, 296
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	2 cut(s)	58, 361
MlyI	GAGTC	2 cut(s)	16, 149
MnlI	CCTC	2 cut(s)	312, 360
MseI	TTAA	2 cut(s)	174, 437
MspI	CCGG	2 cut(s)	65, 80
MspR9I	CCNGG	3 cut(s)	65, 81, 266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	2 cut(s)	65, 81
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	56
PagI	TCATGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	2 cut(s)	16, 148
PpsI	GAGTC	2 cut(s)	16, 148
Ppu21I	YACGTR	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	3 cut(s)	110, 336, 426
RsaNI	GTAC	3 cut(s)	109, 335, 425
SaqAI	TTAA	2 cut(s)	174, 437
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	16, 149
ScrFI	CCNGG	3 cut(s)	65, 81, 266
SetI	ASST	7 cut(s)	90, 134, 160, 184, 336, 340, 361
SfaNI	GCATC	2 cut(s)	130, 277
SfcI	CTRYAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	58, 361
StyD4I	CCNGG	3 cut(s)	63, 79, 264
TaaI	ACNGT	3 cut(s)	48, 311, 429
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	56, 162
TasI	AATT	2 cut(s)	58, 361
TatI	WGTACW	2 cut(s)	108, 424
Tru1I	TTAA	2 cut(s)	174, 437
Tru9I	TTAA	2 cut(s)	174, 437
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.