Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Forward (+)

22480742 .. 22481631

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG229400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTGATGAAACGATTGGTGAAGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAAGCAAGCAAAGACTTGACTTGTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

5.35

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	43, 193
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	130, 174, 200
AluI	AGCT	3 cut(s)	130, 174, 200
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	107, 123
AsuHPI	GGTGA	2 cut(s)	31, 86
AsuII	TTCGAA	2 cut(s)	35, 98
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	107, 123
BcoDI	GTCTC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	3 cut(s)	107, 123, 308
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	107, 123, 308
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	172, 319
BmuI	ACTGGG	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	35, 98
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	107, 123
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	3 cut(s)	163, 265, 334
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	107, 122
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	283
Bsp119I	TTCGAA	2 cut(s)	35, 98
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	363
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	2 cut(s)	35, 98
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	90, 353
Bst6I	CTCTTC	2 cut(s)	17, 351
BstAUI	TGTACA	1 cut(s)	150
BstBI	TTCGAA	2 cut(s)	35, 98
BstC8I	GCNNGC	3 cut(s)	30, 375, 379
BstDEI	CTNAG	2 cut(s)	168, 282
BstF5I	GGATG	3 cut(s)	163, 265, 334
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	105, 121, 306
BstSFI	CTRYAG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	163, 265, 334
Cac8I	GCNNGC	3 cut(s)	30, 375, 379
CciI	TCATGA	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	130, 174, 200, 306, 364
CviKI_1	RGCY	5 cut(s)	130, 174, 200, 306, 364
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	168, 282
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	17, 351
EarI	CTCTTC	2 cut(s)	17, 351
Eco31I	GGTCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	250
FaiI	YATR	5 cut(s)	133, 209, 213, 248, 335
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	3 cut(s)	150, 272, 341
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
HapII	CCGG	2 cut(s)	107, 122
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	2 cut(s)	64, 182
HpaII	CCGG	2 cut(s)	107, 122
HphI	GGTGA	2 cut(s)	31, 86
Hpy188III	TCNNGA	5 cut(s)	68, 179, 203, 238, 247
HpyAV	CCTTC	4 cut(s)	37, 221, 308, 350
HpyCH4III	ACNGT	2 cut(s)	90, 353
HpyCH4V	TGCA	2 cut(s)	361, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	168, 282
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	317
LpnPI	CCDG	9 cut(s)	120, 135, 150, 237, 237, 242, 293, 320, 378
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	172, 319
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	4 cut(s)	34, 302, 323, 338
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	2 cut(s)	37, 100
MlyI	GAGTC	2 cut(s)	58, 191
MnlI	CCTC	2 cut(s)	18, 354
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	107, 122
MspR9I	CCNGG	3 cut(s)	107, 123, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	107, 123
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	395
NspV	TTCGAA	2 cut(s)	35, 98
PagI	TCATGA	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	2 cut(s)	58, 190
PpsI	GAGTC	2 cut(s)	58, 190
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	58, 191
ScrFI	CCNGG	3 cut(s)	107, 123, 308
SetI	ASST	5 cut(s)	48, 132, 176, 202, 226
SfaNI	GCATC	2 cut(s)	172, 319
SfcI	CTRYAG	1 cut(s)	359
SfuI	TTCGAA	2 cut(s)	35, 98
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	37, 100
StyD4I	CCNGG	3 cut(s)	105, 121, 306
TaaI	ACNGT	2 cut(s)	90, 353
TaqI	TCGA	3 cut(s)	35, 98, 204
TasI	AATT	2 cut(s)	37, 100
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	23, 235
XapI	RAATTY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.