Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

21747532 .. 21749077

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAACGATTGGTGAAGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

174

Amino Acids

19.31

Weight (kDa)

5.94

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	66 - 166	2e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	146, 372, 462
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	37, 187
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	124, 168, 194
AluI	AGCT	3 cut(s)	124, 168, 194
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	101, 117
AsuHPI	GGTGA	2 cut(s)	25, 80
AsuII	TTCGAA	2 cut(s)	29, 92
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	59, 446
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	2 cut(s)	101, 117
BcoDI	GTCTC	1 cut(s)	277
BfmI	CTRYAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	101, 117, 302
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	101, 117, 302
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	166, 313
BmuI	ACTGGG	1 cut(s)	255
Bpu14I	TTCGAA	2 cut(s)	29, 92
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	101, 117
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	157, 426
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	157, 259, 328
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	157, 426
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	101, 116
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	2 cut(s)	29, 92
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	2 cut(s)	29, 92
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	157, 426
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	84, 347, 465
Bst6I	CTCTTC	2 cut(s)	11, 345
BstAUI	TGTACA	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	374
BstBI	TTCGAA	2 cut(s)	29, 92
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	162, 276
BstF5I	GGATG	3 cut(s)	157, 259, 328
BstKTI	GATC	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	99, 115, 300
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	157, 259, 328
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	145, 371, 461
CspCI	CAANNNNNGTGG	3 cut(s)	409, 444, 498
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	6 cut(s)	124, 168, 194, 300, 358, 487
CviKI_1	RGCY	6 cut(s)	124, 168, 194, 300, 358, 487
CviQI	GTAC	3 cut(s)	145, 371, 461
DdeI	CTNAG	2 cut(s)	162, 276
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	11, 345
EarI	CTCTTC	2 cut(s)	11, 345
Eco31I	GGTCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	244
FaiI	YATR	6 cut(s)	127, 203, 207, 242, 329, 523
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	3 cut(s)	144, 266, 335
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
HapII	CCGG	2 cut(s)	101, 116
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	2 cut(s)	58, 176
HpaII	CCGG	2 cut(s)	101, 116
HphI	GGTGA	2 cut(s)	25, 80
Hpy188III	TCNNGA	5 cut(s)	62, 173, 197, 232, 241
HpyAV	CCTTC	4 cut(s)	31, 215, 302, 344
HpyCH4III	ACNGT	3 cut(s)	84, 347, 465
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	355, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	162, 276
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	166, 313
MaeII	ACGT	1 cut(s)	373
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	4 cut(s)	28, 296, 317, 332
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	3 cut(s)	31, 94, 397
MlyI	GAGTC	2 cut(s)	52, 185
MnlI	CCTC	3 cut(s)	12, 348, 396
MseI	TTAA	2 cut(s)	210, 473
MspI	CCGG	2 cut(s)	101, 116
MspR9I	CCNGG	3 cut(s)	101, 117, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	2 cut(s)	101, 117
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	216
NspV	TTCGAA	2 cut(s)	29, 92
PagI	TCATGA	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	2 cut(s)	52, 184
PpsI	GAGTC	2 cut(s)	52, 184
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	3 cut(s)	146, 372, 462
RsaNI	GTAC	3 cut(s)	145, 371, 461
SaqAI	TTAA	2 cut(s)	210, 473
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	52, 185
ScrFI	CCNGG	3 cut(s)	101, 117, 302
SetI	ASST	8 cut(s)	42, 126, 170, 196, 220, 372, 376, 397
SfaNI	GCATC	2 cut(s)	166, 313
SfcI	CTRYAG	1 cut(s)	353
SfuI	TTCGAA	2 cut(s)	29, 92
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	31, 94, 397
StyD4I	CCNGG	3 cut(s)	99, 115, 300
TaaI	ACNGT	3 cut(s)	84, 347, 465
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	29, 92, 198
TasI	AATT	3 cut(s)	31, 94, 397
TatI	WGTACW	2 cut(s)	144, 460
Tru1I	TTAA	2 cut(s)	210, 473
Tru9I	TTAA	2 cut(s)	210, 473
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	17, 229
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.