Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Forward (+)

20248546 .. 20269547

Gene Structure 21002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTGATGAAACGATTGGTGAAGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAAAAAGAGCTGCAGAGAATTCTAGAGGCTATGATGCAGGACTAGATGAAATTACAACAAGCGCAAAGGCTTTGGATATGGGCTCTGGGTCTATGGAGGAACCAAGTGTAAAAGTTGATCAAGAGTCTCTAAATAAGCCTGCAATTCAGATGAAAAGGCATAACAATGGACTTGCAATAGATTCAGCATCTCTGAACAGTAACAATAGTTACAAATTAAACAATCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

249

Amino Acids

27.4

Weight (kDa)

5.88

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	68 - 168	4.7e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	37, 535
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	152, 378, 468
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	43, 193
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	130, 174, 200, 527
AluI	AGCT	4 cut(s)	130, 174, 200, 527
Alw26I	GTCTC	2 cut(s)	283, 648
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	361, 527
ApoI	RAATTY	2 cut(s)	37, 535
AspLEI	GCGC	1 cut(s)	581
AsuC2I	CCSGG	2 cut(s)	107, 123
AsuHPI	GGTGA	2 cut(s)	31, 86
AsuII	TTCGAA	2 cut(s)	35, 98
BanII	GRGCYC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	373, 514
BccI	CCATC	2 cut(s)	65, 452
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	107, 123
BcoDI	GTCTC	2 cut(s)	283, 648
BfaI	CTAG	2 cut(s)	540, 560
BfmI	CTRYAG	2 cut(s)	359, 528
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	2 cut(s)	362, 528
BlsI	GCNGC	2 cut(s)	363, 529
Bme1390I	CCNGG	3 cut(s)	107, 123, 308
BmiI	GGNNCC	2 cut(s)	222, 618
BmrFI	CCNGG	3 cut(s)	107, 123, 308
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	172, 319, 541, 713
BmuI	ACTGGG	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	35, 98
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	107, 123
BsaAI	YACGTR	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	163, 432
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	3 cut(s)	163, 265, 334
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	2 cut(s)	163, 432
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	373, 514
BsiSI	CCGG	2 cut(s)	107, 122
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	283, 648
Bso31I	GGTCTC	1 cut(s)	283
Bsp119I	TTCGAA	2 cut(s)	35, 98
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	317, 634
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	222, 618
BspMAI	CTGCAG	2 cut(s)	363, 532
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	2 cut(s)	35, 98
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	2 cut(s)	163, 432
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	317, 634
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	4 cut(s)	90, 353, 471, 716
Bst6I	CTCTTC	2 cut(s)	17, 351
BstAUI	TGTACA	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	380
BstBI	TTCGAA	2 cut(s)	35, 98
BstC8I	GCNNGC	2 cut(s)	30, 657
BstDEI	CTNAG	2 cut(s)	168, 282
BstF5I	GGATG	3 cut(s)	163, 265, 334
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	2 cut(s)	320, 637
BstMAI	GTCTC	2 cut(s)	283, 648
BstMBI	GATC	2 cut(s)	317, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	105, 121, 306
BstSFI	CTRYAG	2 cut(s)	359, 528
BstV1I	GCAGC	2 cut(s)	373, 514
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	163, 265, 334
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	30, 657
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	151, 377, 467
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	2 cut(s)	247, 747
CviQI	GTAC	3 cut(s)	151, 377, 467
DdeI	CTNAG	2 cut(s)	168, 282
DpnI	GATC	2 cut(s)	319, 636
DpnII	GATC	2 cut(s)	317, 634
Eam1104I	CTCTTC	2 cut(s)	17, 351
EarI	CTCTTC	2 cut(s)	17, 351
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	2 cut(s)	250, 750
FatI	CATG	2 cut(s)	246, 746
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	362, 528
FokI	GGATG	3 cut(s)	150, 272, 341
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	362, 528
FspBI	CTAG	2 cut(s)	540, 560
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	2 cut(s)	362, 528
HapII	CCGG	2 cut(s)	107, 122
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	2 cut(s)	250, 750
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	4 cut(s)	64, 182, 641, 698
HpaII	CCGG	2 cut(s)	107, 122
HphI	GGTGA	2 cut(s)	31, 86
Hpy188I	TCNGA	2 cut(s)	666, 711
Hpy188III	TCNNGA	7 cut(s)	68, 179, 203, 238, 247, 540, 638
HpyAV	CCTTC	4 cut(s)	37, 221, 308, 350
HpyCH4III	ACNGT	4 cut(s)	90, 353, 471, 716
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	6 cut(s)	361, 373, 530, 554, 659, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	168, 282
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	250, 750
HspAI	GCGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	317, 634
Lsp1109I	GCAGC	2 cut(s)	373, 514
LweI	GCATC	4 cut(s)	172, 319, 541, 713
MaeI	CTAG	2 cut(s)	540, 560
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	716, 725
MalI	GATC	2 cut(s)	319, 636
MboI	GATC	2 cut(s)	317, 634
MboII	GAAGA	4 cut(s)	34, 302, 323, 338
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	7 cut(s)	37, 100, 403, 535, 567, 660, 731
MlyI	GAGTC	3 cut(s)	58, 191, 650
MnlI	CCTC	5 cut(s)	18, 354, 402, 536, 607
MseI	TTAA	3 cut(s)	216, 479, 734
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	2 cut(s)	107, 122
MspR9I	CCNGG	3 cut(s)	107, 123, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	107, 123
NdeII	GATC	2 cut(s)	317, 634
NlaIII	CATG	2 cut(s)	250, 750
NlaIV	GGNNCC	2 cut(s)	222, 618
NspV	TTCGAA	2 cut(s)	35, 98
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	363, 529
PleI	GAGTC	3 cut(s)	58, 190, 649
PpsI	GAGTC	3 cut(s)	58, 190, 649
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	222, 618
PstI	CTGCAG	2 cut(s)	363, 532
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	3 cut(s)	152, 378, 468
RsaNI	GTAC	3 cut(s)	151, 377, 467
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	216, 479, 734
SatI	GCNGC	2 cut(s)	362, 528
Sau3AI	GATC	2 cut(s)	317, 634
SchI	GAGTC	3 cut(s)	58, 191, 650
ScrFI	CCNGG	3 cut(s)	107, 123, 308
SduI	GDGCHC	1 cut(s)	602
SetI	ASST	9 cut(s)	48, 132, 176, 202, 226, 378, 382, 403, 529
SfaNI	GCATC	4 cut(s)	172, 319, 541, 713
SfcI	CTRYAG	2 cut(s)	359, 528
SfuI	TTCGAA	2 cut(s)	35, 98
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	7 cut(s)	37, 100, 403, 535, 567, 660, 731
SspMI	CTAG	2 cut(s)	540, 560
StyD4I	CCNGG	3 cut(s)	105, 121, 306
TaaI	ACNGT	4 cut(s)	90, 353, 471, 716
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	35, 98, 204
TasI	AATT	7 cut(s)	37, 100, 403, 535, 567, 660, 731
TatI	WGTACW	2 cut(s)	150, 466
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	3 cut(s)	216, 479, 734
Tru9I	TTAA	3 cut(s)	216, 479, 734
TseI	GCWGC	2 cut(s)	361, 527
TspDTI	ATGAA	4 cut(s)	23, 235, 579, 683
XapI	RAATTY	2 cut(s)	37, 535
XbaI	TCTAGA	1 cut(s)	539
XspI	CTAG	2 cut(s)	540, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.