Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

88959038 .. 88961506

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG520100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATTGGATATACTCCTAAGGGAATGCAAATTGCCCAAAAGTCATTGGAAGATATGAATTCCAGGAACTTTTACTTGCTCCCAAGACAAGGGACTGATCTTCTCCTTGCAGCTGCCGGTGAAAAGACTGGAGGTTATACTACTGCAAACTATATATGGGACTTGATGCAAGCTCGTAAAGTAACTCCTCAACTTCCTGCAGTAGAAGCATCGCTTGAAAATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

181

Amino Acids

19.98

Weight (kDa)

4.98

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	72 - 173	1.8e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	393, 483
AfiI	CCNNNNNNNGG	2 cut(s)	89, 365
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	62, 321
AluBI	AGCT	2 cut(s)	113, 173
AluI	AGCT	2 cut(s)	113, 173
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	110, 113, 376
ApoI	RAATTY	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	100, 122, 388
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	64, 323
BcoDI	GTCTC	1 cut(s)	298
BfmI	CTRYAG	2 cut(s)	198, 374
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	111, 114, 377
BlsI	GCNGC	3 cut(s)	112, 115, 378
Bme1390I	CCNGG	2 cut(s)	64, 323
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	64, 323
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	156, 218, 334
BmuI	ACTGGG	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 365
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	133, 271
Bse21I	CCTNAGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	64, 323
BseGI	GGATG	2 cut(s)	280, 349
BseLI	CCNNNNNNNGG	2 cut(s)	89, 365
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	133, 271
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	100, 122, 388
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	106, 173
BslI	CCNNNNNNNGG	2 cut(s)	89, 365
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	106, 173
BsmI	GAATGC	1 cut(s)	30
Bso31I	GGTCTC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	97, 332
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	2 cut(s)	202, 378
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	133, 271
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	2 cut(s)	97, 332
Bst2UI	CCWGG	2 cut(s)	64, 323
Bst4CI	ACNGT	2 cut(s)	368, 486
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	18, 297
BstF5I	GGATG	2 cut(s)	280, 349
BstKTI	GATC	2 cut(s)	100, 335
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	2 cut(s)	97, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 385
BstNI	CCWGG	2 cut(s)	64, 323
BstSCI	CCNGG	2 cut(s)	62, 321
BstSFI	CTRYAG	2 cut(s)	198, 374
BstV1I	GCAGC	3 cut(s)	100, 122, 388
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu36I	CCTNAGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	280, 349
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	392, 482
CspCI	CAANNNNNGTGG	3 cut(s)	430, 465, 519
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	5 cut(s)	113, 173, 321, 379, 508
CviKI_1	RGCY	5 cut(s)	113, 173, 321, 379, 508
CviQI	GTAC	2 cut(s)	392, 482
DdeI	CTNAG	2 cut(s)	18, 297
DpnI	GATC	2 cut(s)	99, 334
DpnII	GATC	2 cut(s)	97, 332
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	62, 321
FaeI	CATG	1 cut(s)	265
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	2 cut(s)	106, 173
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	111, 114, 377
FokI	GGATG	2 cut(s)	287, 356
Fsp4HI	GCNGC	3 cut(s)	111, 114, 377
GluI	GCNGC	3 cut(s)	111, 114, 377
GsuI	CTGGAG	1 cut(s)	150
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	1 cut(s)	265
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	253, 262
HpyAV	CCTTC	3 cut(s)	236, 323, 365
HpyCH4III	ACNGT	2 cut(s)	368, 486
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	7 cut(s)	28, 110, 146, 169, 200, 376, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 385
HpyF3I	CTNAG	2 cut(s)	18, 297
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	97, 332
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	3 cut(s)	100, 122, 388
LweI	GCATC	3 cut(s)	156, 218, 334
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	99, 334
MboI	GATC	2 cut(s)	97, 332
MboII	GAAGA	5 cut(s)	62, 92, 317, 338, 353
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	30, 58, 418
MnlI	CCTC	4 cut(s)	125, 198, 369, 417
MseI	TTAA	2 cut(s)	231, 494
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	64, 323
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	2 cut(s)	64, 323
MwoI	GCNNNNNNNGC	2 cut(s)	206, 385
NdeII	GATC	2 cut(s)	97, 332
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	237
PagI	TCATGA	1 cut(s)	261
PctI	GAATGC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	112, 115, 378
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	62, 321
PspGI	CCWGG	2 cut(s)	62, 321
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	2 cut(s)	202, 378
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	393, 483
RsaNI	GTAC	2 cut(s)	392, 482
SaqAI	TTAA	2 cut(s)	231, 494
SatI	GCNGC	3 cut(s)	111, 114, 377
Sau3AI	GATC	2 cut(s)	97, 332
ScrFI	CCNGG	2 cut(s)	64, 323
SetI	ASST	7 cut(s)	115, 136, 175, 241, 393, 397, 418
SfaNI	GCATC	3 cut(s)	156, 218, 334
SfcI	CTRYAG	2 cut(s)	198, 374
Sse9I	AATT	3 cut(s)	30, 58, 418
StyD4I	CCNGG	2 cut(s)	62, 321
TaaI	ACNGT	2 cut(s)	368, 486
TaiI	ACGT	1 cut(s)	397
TasI	AATT	3 cut(s)	30, 58, 418
TatI	WGTACW	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	231, 494
Tru9I	TTAA	2 cut(s)	231, 494
TseI	GCWGC	3 cut(s)	110, 113, 376
TspDTI	ATGAA	2 cut(s)	71, 250
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.