Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

12703414 .. 12705084

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCTCCACCACCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTATTGATGGTGTTGTACTGTTGATATTAACAGAAACCAAGCCAAATCCTAAAGGCGAAAACCCACAAGCATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

169

Amino Acids

18.69

Weight (kDa)

5.22

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	61 - 161	1.8e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	131, 357, 447
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	22, 172
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	109, 153, 179
AluI	AGCT	3 cut(s)	109, 153, 179
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	86, 102
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	14, 77
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	44, 431
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	86, 102
BcoDI	GTCTC	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	3 cut(s)	86, 102, 287
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	3 cut(s)	86, 102, 287
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	151, 298
BmuI	ACTGGG	1 cut(s)	240
Bpu14I	TTCGAA	2 cut(s)	14, 77
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	86, 102
BsaAI	YACGTR	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	142, 411
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	3 cut(s)	142, 244, 313
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	2 cut(s)	142, 411
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	86, 101
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	262
Bsp119I	TTCGAA	2 cut(s)	14, 77
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	304
BspT104I	TTCGAA	2 cut(s)	14, 77
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	142, 411
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	69, 332, 450
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	359
BstBI	TTCGAA	2 cut(s)	14, 77
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	147, 261
BstF5I	GGATG	3 cut(s)	142, 244, 313
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	84, 100, 285
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	142, 244, 313
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	130, 356, 446
CspCI	CAANNNNNGTGG	3 cut(s)	394, 429, 483
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	6 cut(s)	109, 153, 179, 285, 343, 472
CviKI_1	RGCY	6 cut(s)	109, 153, 179, 285, 343, 472
CviQI	GTAC	3 cut(s)	130, 356, 446
DdeI	CTNAG	2 cut(s)	147, 261
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	229
FaiI	YATR	6 cut(s)	112, 188, 192, 227, 314, 508
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	3 cut(s)	129, 251, 320
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
HapII	CCGG	2 cut(s)	86, 101
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	2 cut(s)	43, 161
HpaII	CCGG	2 cut(s)	86, 101
HphI	GGTGA	1 cut(s)	65
Hpy188III	TCNNGA	5 cut(s)	47, 158, 182, 217, 226
HpyAV	CCTTC	4 cut(s)	16, 200, 287, 329
HpyCH4III	ACNGT	3 cut(s)	69, 332, 450
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	340, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	147, 261
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	151, 298
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	3 cut(s)	281, 302, 317
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	3 cut(s)	16, 79, 382
MlyI	GAGTC	2 cut(s)	37, 170
MnlI	CCTC	2 cut(s)	333, 381
MseI	TTAA	2 cut(s)	195, 458
MspI	CCGG	2 cut(s)	86, 101
MspR9I	CCNGG	3 cut(s)	86, 102, 287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	349
NciI	CCSGG	2 cut(s)	86, 102
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	201
NspV	TTCGAA	2 cut(s)	14, 77
PagI	TCATGA	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	2 cut(s)	37, 169
PpsI	GAGTC	2 cut(s)	37, 169
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	3 cut(s)	131, 357, 447
RsaNI	GTAC	3 cut(s)	130, 356, 446
SaqAI	TTAA	2 cut(s)	195, 458
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	296
SchI	GAGTC	2 cut(s)	37, 170
ScrFI	CCNGG	3 cut(s)	86, 102, 287
SetI	ASST	8 cut(s)	27, 111, 155, 181, 205, 357, 361, 382
SfaNI	GCATC	2 cut(s)	151, 298
SfcI	CTRYAG	1 cut(s)	338
SfuI	TTCGAA	2 cut(s)	14, 77
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	16, 79, 382
StyD4I	CCNGG	3 cut(s)	84, 100, 285
TaaI	ACNGT	3 cut(s)	69, 332, 450
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	14, 77, 183
TasI	AATT	3 cut(s)	16, 79, 382
TatI	WGTACW	2 cut(s)	129, 445
Tru1I	TTAA	2 cut(s)	195, 458
Tru9I	TTAA	2 cut(s)	195, 458
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	214
XapI	RAATTY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.