Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015739

Physical Location & Seq

Genomic Coordinates Reverse (-)

23331727 .. 23333244

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG242500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAACGATTGGTGAAGAGGCGTGCTTCGAATTTGAAGGTTCTTATTACTTCGGCGACTCTTGATGGTGATAAAGTATCACAGTTCTTTTCGAATTGCCCGGTGCTGAATGTTCCGGGGAAGCTATACCCTGTGGAGATATTGTACAGCAATGAGCATCCTAAGAGCTATCTTGAGTCGTCTTTGAAAACAGCTCTCGATATACATATTAAGGAACCTGAAGGAGATGTCTTGATATTCATGACTGGGCAGGATGACATTGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAAGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGACTGTTGATATTAACAGAAACCAAGCCAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

5.91

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152111
rosa_multiflora	Rmu_sc0012279.1_g000001
rosa_samantha	Rh1DG047700 Rh2AG330800 Rh2BG229400 Rh3AG215600 Rh3DG242500 Rh4DG296200 Rh5AG179900 Rh5AG520100 Rh6BG112700 Rh6CG110900 Rh6DG100500 Rh7AG290600 Rh7CG220800
rosa_wichuraiana	Rw2G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	37, 187
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	124, 168, 194
AluI	AGCT	3 cut(s)	124, 168, 194
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	101, 117
AsuHPI	GGTGA	2 cut(s)	25, 80
AsuII	TTCGAA	2 cut(s)	29, 92
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	2 cut(s)	101, 117
BcoDI	GTCTC	1 cut(s)	277
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	101, 117, 302
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	101, 117, 302
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	166, 313
BmuI	ACTGGG	1 cut(s)	255
Bpu14I	TTCGAA	2 cut(s)	29, 92
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	101, 117
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	157, 259, 328
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	101, 116
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	2 cut(s)	29, 92
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	2 cut(s)	29, 92
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	84, 347, 373
Bst6I	CTCTTC	2 cut(s)	11, 345
BstAUI	TGTACA	1 cut(s)	144
BstBI	TTCGAA	2 cut(s)	29, 92
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	162, 276
BstF5I	GGATG	3 cut(s)	157, 259, 328
BstKTI	GATC	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	99, 115, 300
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	157, 259, 328
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	6 cut(s)	124, 168, 194, 300, 358, 395
CviKI_1	RGCY	6 cut(s)	124, 168, 194, 300, 358, 395
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	162, 276
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	11, 345
EarI	CTCTTC	2 cut(s)	11, 345
Eco31I	GGTCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	244
FaiI	YATR	5 cut(s)	127, 203, 207, 242, 329
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	3 cut(s)	144, 266, 335
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
HapII	CCGG	2 cut(s)	101, 116
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	2 cut(s)	58, 176
HpaII	CCGG	2 cut(s)	101, 116
HphI	GGTGA	2 cut(s)	25, 80
Hpy188III	TCNNGA	5 cut(s)	62, 173, 197, 232, 241
HpyAV	CCTTC	4 cut(s)	31, 215, 302, 344
HpyCH4III	ACNGT	3 cut(s)	84, 347, 373
HpyCH4V	TGCA	2 cut(s)	355, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	162, 276
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	311
LpnPI	CCDG	9 cut(s)	114, 129, 144, 231, 231, 236, 287, 314, 372
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	166, 313
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	4 cut(s)	28, 296, 317, 332
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	2 cut(s)	31, 94
MlyI	GAGTC	2 cut(s)	52, 185
MnlI	CCTC	2 cut(s)	12, 348
MseI	TTAA	2 cut(s)	210, 381
MspI	CCGG	2 cut(s)	101, 116
MspR9I	CCNGG	3 cut(s)	101, 117, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	2 cut(s)	101, 117
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	216
NspV	TTCGAA	2 cut(s)	29, 92
PagI	TCATGA	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	2 cut(s)	52, 184
PpsI	GAGTC	2 cut(s)	52, 184
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	210, 381
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	52, 185
ScrFI	CCNGG	3 cut(s)	101, 117, 302
SetI	ASST	5 cut(s)	42, 126, 170, 196, 220
SfaNI	GCATC	2 cut(s)	166, 313
SfcI	CTRYAG	1 cut(s)	353
SfuI	TTCGAA	2 cut(s)	29, 92
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	31, 94
StyD4I	CCNGG	3 cut(s)	99, 115, 300
TaaI	ACNGT	3 cut(s)	84, 347, 373
TaqI	TCGA	3 cut(s)	29, 92, 198
TasI	AATT	2 cut(s)	31, 94
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	210, 381
Tru9I	TTAA	2 cut(s)	210, 381
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	17, 229
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.