Rh1DG214800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017869
Physical Location & Seq
Reverse (-)
42023463 .. 42023636
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG214800.1

Sequence Viewer

Length: 174 bp
ATGGCTGTCGCGCTCCTACGCTGGGCAAACGATGTCGTTCAAGACGCCGGTGTGGAGAAACTCAACCAGACGGCCGAAGTGGGCGGAGGAGATGTTAAGGTCGAGGGAGAGATCTCATCTGGTCCAACGGCGCCAGGAAGTTGGTCTTGGCCTTGTTGCCGTGGAGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

5.93

Weight (kDa)

4.33

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 45, 131
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 2 cut(s) 72, 149
AspLEI GCGC 2 cut(s) 13, 133
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 130
BceAI ACGGC 3 cut(s) 87, 144, 144
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 134
BglII AGATCT 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 135
BsaHI GRCGYC 2 cut(s) 45, 131
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 47
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 102
BseX3I CGGCCG 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 74, 151
BshNI GGYRCC 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 74, 151
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 74, 151
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 2 cut(s) 45, 131
Bst2UI CCWGG 1 cut(s) 135
BstACI GRCGYC 2 cut(s) 45, 131
BstDSI CCRYGG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 13, 133
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 111
BstMCI CGRYCG 1 cut(s) 75
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 111
BstZI CGGCCG 1 cut(s) 72
BsuRI GGCC 2 cut(s) 74, 151
BtgI CCRYGG 1 cut(s) 160
CfoI GCGC 2 cut(s) 13, 133
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 53
CviJI RGCY 3 cut(s) 5, 74, 151
CviKI_1 RGCY 3 cut(s) 5, 74, 151
DinI GGCGCC 1 cut(s) 132
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
EciI GGCGGA 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 122
Eco52I CGGCCG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FspBI CTAG 1 cut(s) 172
GlaI GCGC 2 cut(s) 12, 132
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 2 cut(s) 74, 151
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 53
HhaI GCGC 2 cut(s) 13, 133
Hin1I GRCGYC 2 cut(s) 45, 131
Hin6I GCGC 2 cut(s) 11, 131
HinP1I GCGC 2 cut(s) 11, 131
HpaII CCGG 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 41
Hsp92I GRCGYC 2 cut(s) 45, 131
HspAI GCGC 2 cut(s) 11, 131
KasI GGCGCC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 6 cut(s) 7, 61, 80, 105, 120, 147
MaeI CTAG 1 cut(s) 172
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MflI RGATCY 1 cut(s) 111
Mly113I GGCGCC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 80, 97
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 11
NarI GGCGCC 1 cut(s) 131
NdeII GATC 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 132
PluTI GGCGCC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 111
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 135
SetI ASST 2 cut(s) 102, 173
SfoI GGCGCC 1 cut(s) 132
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 1 cut(s) 122
SsiI CCGC 1 cut(s) 84
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 133
TaqI TCGA 1 cut(s) 102
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 122
XspI CTAG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.