Rh3BG340400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017869
Physical Location & Seq
Forward (+)
36534706 .. 36534933
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG340400.1

Sequence Viewer

Length: 228 bp
ATGCCTGCTGTGGGCAGGGTTGCTATGCTTGCCTGGCTGCTACGTTATGCTCACATGGCTGTCGCGCTCCTACACTGGGCAAACGACGTCGTTCAAGACGCCGGTGTGGAGAAACTCAACCAAACGGCCAAAGTGGGCGGAGGAGATGTTAAGGTCGAGGGAGAGATCTCCTCTGGTCCAACGGCGCCAGAAAGTTGGTCTTGGCCTTGTTGCCGCGAAGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.09

Weight (kDa)

5.14

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 2 cut(s) 65, 216
AciI CCGC 2 cut(s) 138, 214
AcoI YGGCCR 1 cut(s) 126
AcyI GRCGYC 3 cut(s) 87, 99, 185
AfiI CCNNNNNNNGG 2 cut(s) 11, 76
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 2 cut(s) 126, 203
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 2 cut(s) 67, 187
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 24
BceAI ACGGC 2 cut(s) 141, 198
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 188
BglII AGATCT 1 cut(s) 165
BisI GCNGC 2 cut(s) 38, 214
BlsI GCNGC 2 cut(s) 39, 215
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaHI GRCGYC 3 cut(s) 87, 99, 185
BsaI GGTCTC 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 76
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 11, 76
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 2 cut(s) 156, 160
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 65, 216
BshFI GGCC 2 cut(s) 128, 205
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 11, 76
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 2 cut(s) 128, 205
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 138, 214
BspANI GGCC 2 cut(s) 128, 205
BspFNI CGCG 2 cut(s) 65, 216
BspLI GGNNCC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 3 cut(s) 87, 99, 185
Bst2UI CCWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 3 cut(s) 87, 99, 185
BstC8I GCNNGC 2 cut(s) 6, 30
BstFNI CGCG 2 cut(s) 65, 216
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 67, 187
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 29, 34, 56
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstUI CGCG 2 cut(s) 65, 216
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 128, 205
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 6, 30
CfoI GCGC 2 cut(s) 67, 187
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 107
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 37, 59, 128, 205
CviKI_1 RGCY 4 cut(s) 37, 59, 128, 205
DinI GGCGCC 1 cut(s) 186
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 26, 48, 56
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 38, 214
Fsp4HI GCNGC 2 cut(s) 38, 214
FspBI CTAG 1 cut(s) 226
GlaI GCGC 2 cut(s) 66, 186
GluI GCNGC 2 cut(s) 38, 214
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 128, 205
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 107
HhaI GCGC 2 cut(s) 67, 187
Hin1I GRCGYC 3 cut(s) 87, 99, 185
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 2 cut(s) 65, 185
HinP1I GCGC 2 cut(s) 65, 185
HpaII CCGG 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 95
Hpy99I CGWCG 2 cut(s) 89, 92
HpyCH4IV ACGT 2 cut(s) 43, 87
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 34, 56
HpySE526I ACGT 2 cut(s) 43, 87
Hsp92I GRCGYC 3 cut(s) 87, 99, 185
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 2 cut(s) 65, 185
KasI GGCGCC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 7 cut(s) 18, 19, 46, 61, 115, 159, 201
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 226
MaeII ACGT 2 cut(s) 43, 87
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MflI RGATCY 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 3 cut(s) 134, 151, 181
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 2 cut(s) 65, 216
MwoI GCNNNNNNNGC 3 cut(s) 29, 34, 56
NarI GGCGCC 1 cut(s) 185
NdeII GATC 1 cut(s) 165
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 39, 215
PluTI GGCGCC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 165
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 38, 214
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 46, 90, 156, 227
SfoI GGCGCC 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 176
SsiI CCGC 2 cut(s) 138, 214
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 32
TaiI ACGT 2 cut(s) 46, 90
TaqI TCGA 1 cut(s) 156
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 37
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 226
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.