Rh7DG376100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017869
Physical Location & Seq
Reverse (-)
51093553 .. 51093813
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG376100.1

Sequence Viewer

Length: 261 bp
ATGGTGGAATTGGTCTCTGAGGTTTGGCTGAGCTTGCCTACTGTGCGCGGGGTTGCTATGCTTTCCTGGCTGCTACGTTGGGCTCGCATGGATGTCGCGCTCCTATGCTGGGCAAACGACGTCATTCAAGATGCCGATGTGGAGAAACTCAACCAGACAGCCGAAGTGGGCGGAGGAGATGTTAAGCTCGAGGGAGAGATCTCCTCTGGTCCAACGGCGCCAGAAAGTTGGTCTTGGCCTTGTTGCCACGGAGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.44

Weight (kDa)

4.25

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 217
AccII CGCG 2 cut(s) 48, 98
AciI CCGC 2 cut(s) 48, 171
AcyI GRCGYC 2 cut(s) 120, 218
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 2 cut(s) 33, 187
AluI AGCT 2 cut(s) 33, 187
Alw26I GTCTC 2 cut(s) 19, 248
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 3 cut(s) 48, 100, 220
AspS9I GGNCC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 19, 248
BfaI CTAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 221
BglII AGATCT 1 cut(s) 198
BisI GCNGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu1102I GCTNAGC 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 120, 218
BsaI GGTCTC 2 cut(s) 19, 248
BsaJI CCNNGG 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 9, 20
BseRI GAGGAG 2 cut(s) 189, 193
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 48, 98
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 19, 248
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 2 cut(s) 19, 248
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 198
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 2 cut(s) 48, 171
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 10, 21
BspFNI CGCG 2 cut(s) 48, 98
BspLI GGNNCC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 2 cut(s) 19, 248
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 2 cut(s) 120, 218
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 2 cut(s) 120, 218
BstC8I GCNNGC 2 cut(s) 35, 85
BstDEI CTNAG 2 cut(s) 18, 29
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 2 cut(s) 48, 98
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 3 cut(s) 48, 100, 220
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 2 cut(s) 19, 248
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 34, 43, 67
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 2 cut(s) 48, 98
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 35, 85
CfoI GCGC 3 cut(s) 48, 100, 220
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 1 cut(s) 88
CviJI RGCY 7 cut(s) 28, 33, 70, 83, 161, 187, 238
CviKI_1 RGCY 7 cut(s) 28, 33, 70, 83, 161, 187, 238
DdeI CTNAG 2 cut(s) 18, 29
DinI GGCGCC 1 cut(s) 219
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 2 cut(s) 19, 248
Eco47I GGWCC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 85
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 59, 89, 106
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 259
GlaI GCGC 3 cut(s) 47, 99, 219
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 238
HhaI GCGC 3 cut(s) 48, 100, 220
Hin1I GRCGYC 2 cut(s) 120, 218
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 3 cut(s) 46, 98, 218
HinP1I GCGC 3 cut(s) 46, 98, 218
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 76, 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 43, 67
HpyF3I CTNAG 2 cut(s) 18, 29
HpySE526I ACGT 2 cut(s) 76, 120
Hsp92I GRCGYC 2 cut(s) 120, 218
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 3 cut(s) 46, 98, 218
KasI GGCGCC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 6 cut(s) 52, 79, 94, 167, 192, 234
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 259
MaeII ACGT 2 cut(s) 76, 120
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 13, 167, 184, 214
MseI TTAA 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 2 cut(s) 48, 98
MwoI GCNNNNNNNGC 3 cut(s) 34, 43, 67
NarI GGCGCC 1 cut(s) 218
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 72
PluTI GGCGCC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 198
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 85
SetI ASST 6 cut(s) 24, 35, 79, 123, 189, 260
SfaNI GCATC 1 cut(s) 121
SfoI GGCGCC 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 8
SsiI CCGC 2 cut(s) 48, 171
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 79, 123
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 8
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 259
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.