Rh3CG337700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017869
Physical Location & Seq
Forward (+)
37763044 .. 37763343
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG337700.1

Sequence Viewer

Length: 300 bp
ATGGTGGAATTGGTCTCTAAGGTTTGGTTGAGTTGGGCAGAGTGGTGTGACGAGGTTGTGTTGCGTGCACGCATTCCTGCTGTGGGCAGGGTTGCTATGCTTGCCTGGCTGCTACGTTATGCTCACATGGTTGTCGCGCTCCTACACTGGGCAAACTACGTCGTTCAAGACGCCGGTGTGGGGAAACTCAACCAGACTGCCGAAGTGGGCGGAGGAGATGTTGAGGTCGAGGGAGAGATCTCCTCTAGTCCAACGGCGCCAGAAAGTTGGTCTTGGCCTTGTTGCCGCGGAGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.93

Weight (kDa)

4.83

Isoelectric Point (pI)

27.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 2 cut(s) 137, 288
AciI CCGC 3 cut(s) 210, 286, 288
AcyI GRCGYC 2 cut(s) 171, 257
AfiI CCNNNNNNNGG 3 cut(s) 83, 148, 180
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 19, 287
Alw44I GTGCAC 1 cut(s) 66
AoxI GGCC 1 cut(s) 275
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 139, 259
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 19, 287
BfaI CTAG 2 cut(s) 246, 298
BfoI RGCGCY 1 cut(s) 260
BglII AGATCT 1 cut(s) 237
BisI GCNGC 2 cut(s) 110, 286
BlsI GCNGC 2 cut(s) 111, 287
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BsaHI GRCGYC 2 cut(s) 171, 257
BsaI GGTCTC 2 cut(s) 19, 287
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 148, 180
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 83, 148, 180
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 228, 232
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 137, 288
BshFI GGCC 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 83, 148, 180
BsmAI GTCTC 2 cut(s) 19, 287
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 1 cut(s) 277
Bso31I GGTCTC 2 cut(s) 19, 287
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 3 cut(s) 210, 286, 288
BspANI GGCC 1 cut(s) 277
BspFNI CGCG 2 cut(s) 137, 288
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 2 cut(s) 19, 287
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 2 cut(s) 171, 257
Bst2UI CCWGG 1 cut(s) 106
BstACI GRCGYC 2 cut(s) 171, 257
BstC8I GCNNGC 3 cut(s) 66, 70, 102
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 286
BstFNI CGCG 2 cut(s) 137, 288
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 139, 259
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 19, 287
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 101, 106
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 137, 288
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 66, 70, 102
CfoI GCGC 2 cut(s) 139, 259
Cfr10I RCCGGY 1 cut(s) 173
Cfr42I CCGCGG 1 cut(s) 289
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 109, 277
CviKI_1 RGCY 2 cut(s) 109, 277
DdeI CTNAG 1 cut(s) 18
DinI GGCGCC 1 cut(s) 258
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 225
Eco31I GGTCTC 2 cut(s) 19, 287
EcoRII CCWGG 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 98, 120, 128
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 110, 286
Fsp4HI GCNGC 2 cut(s) 110, 286
FspBI CTAG 2 cut(s) 246, 298
GlaI GCGC 2 cut(s) 138, 258
GluI GCNGC 2 cut(s) 110, 286
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 139, 259
Hin1I GRCGYC 2 cut(s) 171, 257
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 137, 257
HinP1I GCGC 2 cut(s) 137, 257
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 115, 159
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 106
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 115, 159
Hsp92I GRCGYC 2 cut(s) 171, 257
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 137, 257
KasI GGCGCC 1 cut(s) 256
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 73, 90, 91, 118, 133, 187, 206, 273
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 2 cut(s) 246, 298
MaeII ACGT 2 cut(s) 115, 159
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 46, 206, 217, 223, 253
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 137, 288
MwoI GCNNNNNNNGC 2 cut(s) 101, 106
NarI GGCGCC 1 cut(s) 257
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 47
PctI GAATGC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 111, 287
PluTI GGCGCC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 237
SacII CCGCGG 1 cut(s) 289
SatI GCNGC 2 cut(s) 110, 286
Sau3AI GATC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 70
SetI ASST 6 cut(s) 24, 57, 118, 162, 228, 299
SfoI GGCGCC 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 289
SgrAI CRCCGGYG 1 cut(s) 173
SgrBI CCGCGG 1 cut(s) 289
Sse9I AATT 1 cut(s) 8
SsiI CCGC 3 cut(s) 210, 286, 288
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 2 cut(s) 246, 298
StyD4I CCNGG 1 cut(s) 104
TaiI ACGT 2 cut(s) 118, 162
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 288
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 47
TspRI CASTG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 66
XspI CTAG 2 cut(s) 246, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.