Rh5BG369100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017869
Physical Location & Seq
Forward (+)
57990750 .. 57991049
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG369100.1

Sequence Viewer

Length: 300 bp
ATGGTAGAATTGGTCTCTGAGGTTTGGCTGAGTTGGGCAGAGTGGTGTGACGAGGCTGTGTTGCGTGCATGCGTGCCTGGTGTGCGCGGGATTGTTATGCTTGCCTGGCTGTTACGTTGGGCTCGCATGGCTACCGCGCTCCTACGCTGGGAAAACGACGTCATTCAAGACGCCGGTGTGGAGAAACTCAACCAGACGGCAGAAGTGGGCGGAGGAGATGTTGAGGTCGAGGGAGAGATCTCCTCTAGTCCAACGGAGCCAGGAAATTGGTCTTGGCATTGTTGTTGCGGAAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

4.42

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccII CGCG 2 cut(s) 87, 137
AciI CCGC 4 cut(s) 87, 135, 210, 288
AcyI GRCGYC 2 cut(s) 159, 171
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 3 cut(s) 76, 104, 259
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
Alw26I GTCTC 1 cut(s) 19
AspLEI GCGC 2 cut(s) 87, 139
BanII GRGCYC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 3 cut(s) 78, 106, 261
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 2 cut(s) 246, 298
BglII AGATCT 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 78, 106, 261
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 78, 106, 261
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BsaHI GRCGYC 2 cut(s) 159, 171
BsaI GGTCTC 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 173
BseBI CCWGG 3 cut(s) 78, 106, 261
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 9, 20
BseRI GAGGAG 2 cut(s) 228, 232
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 2 cut(s) 87, 137
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 4 cut(s) 87, 135, 210, 288
BspCNI CTCAG 2 cut(s) 10, 21
BspFNI CGCG 2 cut(s) 87, 137
BspLI GGNNCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 2 cut(s) 159, 171
Bst2UI CCWGG 3 cut(s) 78, 106, 261
BstACI GRCGYC 2 cut(s) 159, 171
BstC8I GCNNGC 5 cut(s) 66, 70, 74, 102, 124
BstDEI CTNAG 2 cut(s) 18, 29
BstFNI CGCG 2 cut(s) 87, 137
BstHHI GCGC 2 cut(s) 87, 139
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 82, 106, 128
BstNI CCWGG 3 cut(s) 78, 106, 261
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 76, 104, 259
BstUI CGCG 2 cut(s) 87, 137
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 237
Cac8I GCNNGC 5 cut(s) 66, 70, 74, 102, 124
CfoI GCGC 2 cut(s) 87, 139
Cfr10I RCCGGY 1 cut(s) 173
CseI GACGC 1 cut(s) 179
CviAII CATG 2 cut(s) 69, 127
CviJI RGCY 6 cut(s) 28, 56, 109, 122, 131, 259
CviKI_1 RGCY 6 cut(s) 28, 56, 109, 122, 131, 259
DdeI CTNAG 2 cut(s) 18, 29
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 76, 104, 259
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 72, 130
FaiI YATR 3 cut(s) 70, 98, 128
FatI CATG 2 cut(s) 68, 126
FauI CCCGC 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 2 cut(s) 246, 298
GlaI GCGC 2 cut(s) 86, 138
GsaI CCCAGC 1 cut(s) 151
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 87, 139
Hin1I GRCGYC 2 cut(s) 159, 171
Hin1II CATG 2 cut(s) 72, 130
Hin6I GCGC 2 cut(s) 85, 137
HinP1I GCGC 2 cut(s) 85, 137
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 115, 159
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 106, 128
HpyF3I CTNAG 2 cut(s) 18, 29
HpySE526I ACGT 2 cut(s) 115, 159
Hsp92I GRCGYC 2 cut(s) 159, 171
Hsp92II CATG 2 cut(s) 72, 130
HspAI GCGC 2 cut(s) 85, 137
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 144, 256
LpnPI CCDG 9 cut(s) 63, 90, 91, 118, 133, 187, 206, 246, 273
MaeI CTAG 2 cut(s) 246, 298
MaeII ACGT 2 cut(s) 115, 159
MaeIII GTNAC 2 cut(s) 47, 111
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 2 cut(s) 8, 265
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 6 cut(s) 13, 46, 206, 217, 223, 253
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 78, 106, 261
MvaI CCWGG 3 cut(s) 78, 106, 261
MvnI CGCG 2 cut(s) 87, 137
MwoI GCNNNNNNNGC 3 cut(s) 82, 106, 128
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 72, 130
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 72
PaeI GCATGC 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 76, 104, 259
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 76, 104, 259
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 237
Sau3AI GATC 1 cut(s) 237
ScrFI CCNGG 3 cut(s) 78, 106, 261
SduI GDGCHC 1 cut(s) 124
SetI ASST 5 cut(s) 24, 118, 162, 228, 299
SgrAI CRCCGGYG 1 cut(s) 173
SphI GCATGC 1 cut(s) 72
Sse9I AATT 2 cut(s) 8, 265
SsiI CCGC 4 cut(s) 87, 135, 210, 288
SspMI CTAG 2 cut(s) 246, 298
StyD4I CCNGG 3 cut(s) 76, 104, 259
TaiI ACGT 2 cut(s) 118, 162
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 8, 265
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 72
XspI CTAG 2 cut(s) 246, 298
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.