Rh6BG226800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017869
Physical Location & Seq
Forward (+)
42793105 .. 42793302
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG226800.1

Sequence Viewer

Length: 198 bp
ATGCTTGCCTGGCTGCTACGTTGGGCTCGCATGGCTGCCACGCTCCTACGCTGGGCAAACGACGTCGTTCAAGATGCCGGTGTGGAGAAACTCAACCAGCTGGCCGAAGTGGGGGAAGGAGATGTTGAGGTCGAGGGAGAGATCTCCTCTGGTCCAACGGCGCCAGGAAGTTGGTCTTGTTGCCGCGGAGAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.03

Weight (kDa)

4.36

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 186
AciI CCGC 2 cut(s) 184, 186
AcoI YGGCCR 1 cut(s) 102
AcyI GRCGYC 2 cut(s) 63, 161
AfiI CCNNNNNNNGG 2 cut(s) 52, 111
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 2 cut(s) 8, 163
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 13, 35
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 152
AvaII GGWCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 10, 165
BfaI CTAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 164
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 14, 36, 184
BlsI GCNGC 3 cut(s) 15, 37, 185
Bme1390I CCNGG 2 cut(s) 10, 165
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 10, 165
BmsI GCATC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaHI GRCGYC 2 cut(s) 63, 161
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 111
Bse118I RCCGGY 1 cut(s) 77
BseBI CCWGG 2 cut(s) 10, 165
BseDI CCNNGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 52, 111
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 52, 111
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 184, 186
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 2 cut(s) 63, 161
Bst2UI CCWGG 2 cut(s) 10, 165
BstACI GRCGYC 2 cut(s) 63, 161
BstC8I GCNNGC 3 cut(s) 6, 28, 102
BstDSI CCRYGG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 10, 32
BstNI CCWGG 2 cut(s) 10, 165
BstSCI CCNGG 2 cut(s) 8, 163
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 6, 28, 102
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 187
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 13, 26, 35, 100, 104
CviKI_1 RGCY 5 cut(s) 13, 26, 35, 100, 104
DinI GGCGCC 1 cut(s) 162
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 8, 163
EcoT38I GRGCYC 1 cut(s) 28
EgeI GGCGCC 1 cut(s) 162
EheI GGCGCC 1 cut(s) 162
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 14, 36, 184
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 14, 36, 184
FspBI CTAG 1 cut(s) 196
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 14, 36, 184
GsaI CCCAGC 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 2 cut(s) 63, 161
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HpaII CCGG 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 19, 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 32
HpySE526I ACGT 2 cut(s) 19, 63
Hsp92I GRCGYC 2 cut(s) 63, 161
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 161
KasI GGCGCC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 187
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 8 cut(s) 22, 37, 86, 91, 110, 135, 150, 177
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 196
MaeII ACGT 2 cut(s) 19, 63
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 28
Mly113I GGCGCC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 3 cut(s) 121, 127, 157
MspA1I CMGCKG 2 cut(s) 100, 186
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 10, 165
MvaI CCWGG 2 cut(s) 10, 165
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 10, 32
NarI GGCGCC 1 cut(s) 161
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 15, 37, 185
PluTI GGCGCC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 8, 163
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 8, 163
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 100
SacII CCGCGG 1 cut(s) 187
SatI GCNGC 3 cut(s) 14, 36, 184
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 10, 165
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 22, 66, 102, 132, 197
SfaNI GCATC 1 cut(s) 64
SfoI GGCGCC 1 cut(s) 162
Sfr303I CCGCGG 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 187
SinI GGWCC 1 cut(s) 152
SsiI CCGC 2 cut(s) 184, 186
SspDI GGCGCC 1 cut(s) 160
SspMI CTAG 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 8, 163
TaiI ACGT 2 cut(s) 22, 66
TaqI TCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 186
TseI GCWGC 2 cut(s) 13, 35
VpaK11BI GGWCC 1 cut(s) 152
XspI CTAG 1 cut(s) 196
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.