Rh7AG372700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017869
Physical Location & Seq
Forward (+)
48109984 .. 48110178
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG372700.1

Sequence Viewer

Length: 195 bp
ATGGTGGAATTGGTCTCTGAGGTTTGGCTGAGTTGGGCAGAGTGGTGTGACAAGGTTGTGCTGCCTGCACGCGTGCCTACTGTGCGCAGGGTTGCTATGCTTGCCTGGCTGCTATGTTGGGATCGCATGACTGCCGCGCTCCTACGCTGGGCAAACGACGTCGTTCAAGACGCCGATGTGGAGAAACTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.47

Weight (kDa)

4.81

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
Acc16I TGCGCA 1 cut(s) 86
AccII CGCG 2 cut(s) 72, 137
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 129
AcyI GRCGYC 2 cut(s) 159, 171
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 61, 109
AspLEI GCGC 2 cut(s) 87, 139
BbvI GCAGC 2 cut(s) 48, 96
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 193
BisI GCNGC 3 cut(s) 62, 110, 135
BlsI GCNGC 3 cut(s) 63, 111, 136
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 159, 171
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 9, 20
BseXI GCAGC 2 cut(s) 48, 96
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 2 cut(s) 72, 137
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 10, 21
BspFNI CGCG 2 cut(s) 72, 137
BspPI GGATC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 19
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 2 cut(s) 159, 171
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 82
BstACI GRCGYC 2 cut(s) 159, 171
BstC8I GCNNGC 4 cut(s) 66, 70, 74, 102
BstDEI CTNAG 2 cut(s) 18, 29
BstFNI CGCG 2 cut(s) 72, 137
BstHHI GCGC 2 cut(s) 87, 139
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 82, 101, 106
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstUI CGCG 2 cut(s) 72, 137
BstV1I GCAGC 2 cut(s) 48, 96
Cac8I GCNNGC 4 cut(s) 66, 70, 74, 102
CfoI GCGC 2 cut(s) 87, 139
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 28, 109
CviKI_1 RGCY 2 cut(s) 28, 109
DdeI CTNAG 2 cut(s) 18, 29
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 98, 115, 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 62, 110, 135
Fsp4HI GCNGC 3 cut(s) 62, 110, 135
FspBI CTAG 1 cut(s) 193
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 2 cut(s) 86, 138
GluI GCNGC 3 cut(s) 62, 110, 135
GsaI CCCAGC 1 cut(s) 151
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 87, 139
Hin1I GRCGYC 2 cut(s) 159, 171
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 85, 137
HinP1I GCGC 2 cut(s) 85, 137
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 2 cut(s) 161, 164
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 101, 106
HpyF3I CTNAG 2 cut(s) 18, 29
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 2 cut(s) 159, 171
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 85, 137
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 73, 78, 91, 118, 133
Lsp1109I GCAGC 2 cut(s) 48, 96
MaeI CTAG 1 cut(s) 193
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MluCI AATT 1 cut(s) 8
MluI ACGCGT 1 cut(s) 70
MnlI CCTC 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 72, 137
MwoI GCNNNNNNNGC 3 cut(s) 82, 101, 106
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 86
PkrI GCNGC 3 cut(s) 63, 111, 136
Psp6I CCWGG 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 104
SatI GCNGC 3 cut(s) 62, 110, 135
Sau3AI GATC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 106
SetI ASST 3 cut(s) 24, 57, 162
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 162
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 137
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 61, 109
Tsp45I GTSAC 1 cut(s) 47
XspI CTAG 1 cut(s) 193
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.