Rh7CG204800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017869
Physical Location & Seq
Reverse (-)
18211741 .. 18212040
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG204800.1

Sequence Viewer

Length: 300 bp
ATGGTGGAATTGGTCTTTGAGGTTTGGCTGAGTTGGGCAGAGTGGTGTGACGAGGCTGTGCTGCGTGCACGCGTGCCTACTATGCGCGGGGTTGCTATGCTTGCCGGGTTGCTACGTTGGGCTCGCATGGCTGCCGCTCTCCTACGCTGGGCAAAAGACGTCGTTCAAGACGCCGGTGTGGAGCAACTCAACCAGACGGCCGAAGTGGGCGGAGGAGATGTTGAGGTCGAGGGAGAGATCTCCTCTGGTCCAACGGTGCTAGAAAGTTGGTCTTGGCCTTGTTGCCGCAGAGAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

4.54

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 2 cut(s) 72, 87
AciI CCGC 4 cut(s) 87, 135, 210, 286
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 159, 171
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 66
AoxI GGCC 2 cut(s) 198, 275
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 61, 131
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 48, 118
BceAI ACGGC 1 cut(s) 213
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 237
BisI GCNGC 4 cut(s) 62, 132, 135, 286
BlsI GCNGC 4 cut(s) 63, 133, 136, 287
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpuMI CCSGG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 159, 171
BsaI GGTCTC 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 228, 232
BseSI GKGCMC 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 48, 118
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 2 cut(s) 72, 87
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 200, 277
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 105, 174
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 2 cut(s) 200, 277
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 70, 124
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 4 cut(s) 87, 135, 210, 286
BspANI GGCC 2 cut(s) 200, 277
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 72, 87
BspTNI GGTCTC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 2 cut(s) 159, 171
Bst4CI ACNGT 1 cut(s) 256
BstACI GRCGYC 2 cut(s) 159, 171
BstC8I GCNNGC 5 cut(s) 66, 70, 74, 102, 124
BstDEI CTNAG 1 cut(s) 29
BstFNI CGCG 2 cut(s) 72, 87
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 82, 101, 128
BstSCI CCNGG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 72, 87
BstV1I GCAGC 2 cut(s) 48, 118
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BstZI CGGCCG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 200, 277
Cac8I GCNNGC 5 cut(s) 66, 70, 74, 102, 124
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 28, 56, 122, 131, 200, 277
CviKI_1 RGCY 6 cut(s) 28, 56, 122, 131, 200, 277
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 198
EagI CGGCCG 1 cut(s) 198
EciI GGCGGA 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 83, 98, 128
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 4 cut(s) 62, 132, 135, 286
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 4 cut(s) 62, 132, 135, 286
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 86
GluI GCNGC 4 cut(s) 62, 132, 135, 286
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 200, 277
HapII CCGG 2 cut(s) 105, 174
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 2 cut(s) 159, 171
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HpaII CCGG 2 cut(s) 105, 174
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 115, 159
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 101, 128
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 115, 159
Hsp92I GRCGYC 2 cut(s) 159, 171
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 118, 133, 187, 206, 231
Lsp1109I GCAGC 2 cut(s) 48, 118
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 115, 159
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 239
MbiI CCGCTC 1 cut(s) 137
MboI GATC 1 cut(s) 237
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 70, 124
MluCI AATT 1 cut(s) 8
MluI ACGCGT 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 6 cut(s) 13, 46, 206, 217, 223, 253
MspI CCGG 2 cut(s) 105, 174
MspR9I CCNGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 72, 87
MwoI GCNNNNNNNGC 3 cut(s) 82, 101, 128
NciI CCSGG 1 cut(s) 106
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 47
PkrI GCNGC 4 cut(s) 63, 133, 136, 287
PspFI CCCAGC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 237
SatI GCNGC 4 cut(s) 62, 132, 135, 286
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 2 cut(s) 70, 124
SetI ASST 5 cut(s) 24, 118, 162, 228, 299
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 1 cut(s) 248
Sse9I AATT 1 cut(s) 8
SsiI CCGC 4 cut(s) 87, 135, 210, 286
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 118, 162
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 8
TauI GCSGC 2 cut(s) 137, 288
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 61, 131
Tsp45I GTSAC 1 cut(s) 47
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.