Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014543

Physical Location & Seq

Genomic Coordinates Reverse (-)

1463323 .. 1466665

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGCATGGTTCCCTCACCTTATTAAAATCTGACACATTTTTCTTCCTTTGGGGTCTGAAACTTTGTCCCTCTCCAAAAATGGAGATTTCCCACTCCTTCTTCTTCTACAATCTTCTTCTCTTGTTCATGTTCTCTGCAGCTGTTTCAGCAGCTGATCTTTACTCAGAGACCCTTCTGAGCTTGAAGTCTGAGCTCACAGATGACTATGATAGCTTACAAGACTGGTCTGTGCCTCCTGGACAAAACCCATCTGCGAAAATCTATGCCTGTTCTTGGTCTGGTGTCAAATGCAACAGCAACAACTCCTCTGTTACCAGTCTAGACCTGTCAGTGAAGAGTCTTGCCGGTTCAATCTCCGGAGTCAACTTCAGTGTCTTTACTGATCTTCTTGACCTGAACCTGAGTTACAACTCATTTTCCGGCAAGCTCCCACTGGGAATGTTCACCCTGGCCAACTTAACAAGCTTGGACATTAGCCGGAACAACTTCTCCGGCCAGTTCCCAGCTGGCATCTCCGGTCTTACCAATCTGGTTGTGTTTGATGCATTCAGCAACAGCTTTTCTGGGTCACTGCCTGCTGAGGTGTCTCAACTTCAGAATCTCAAGGTCCTGAATCTAGCTGGGAGCTACTTCAAGGGTCCAATCCCACTAGAATATGGTAATTTTCAAAGCCTTGAGTTTATTCATCTTGCAGGGAATATGCTCAGTGGGAACATACCACCTGAATTGGGCAAGCTCAAAACAGTGACTCATATGGAGATTGGCTACAATTCTTACCAGGGAGGCATCCCTTGGCAATTGGGAAACATGAGCCAGCTTCAGTATCTTGATATTGCTTATGCAAATCTCTCTGAGTCCATTCCAAGAGAGCTTGGGAATCTTACCAAGCTTGAGTCTCTCTTTCTCTTCAGAAACCAGCTTAGTGGATCAATACCAGTGGAGTTCAGTAAACTTCAATCTCTCACAAGCTTGGATCTTTCGGATAATGAAATCTCCGGGCCGATCCCGGATAGTCTTCTAGAGTTGAAGAACCTGAAACTGTTGAGTCTTTTCTACAATGAGATGAGTGGTGCTGTTCCTGAAGGGATTGCTGAGCTTCCTTCACTGGAGACTCTTCTTATATGGAACAACTACTTCTCTGGGAATCTTCCACAGGATTTGGGGAGGAACTCCAACCTCATGTGGGTTGATGTGTCTACAAACAACTTCAATGGCAGCATTCCACCAGATATCTGTGTGAAAGGTGTGCTCTTTAAGCTGATGCTGTTTTCGAATAATTTTAGTGGCAGTCTTGCACCATCTCTGTCCAATTGTTCTTCACTTGTTCGTCTTCGGCTTGAAGATAACTCATTCTCAGGTGAGATCCCTTTGAAATTCAGCAACTTTCGTGATCTTTCATATGTAGACTTGTCCAAGAATAAACTTACTGGTGGGATTCCAATAGATATAGACCAAGCTCCCAAGCTTGAGTACTTTAATGTGTCCAATAATCCAGAATTAGGGGGCACAATTCCTGCACAAACATGGTCTTTGCCAGTTCTTCAGAATTTCTCAGCTTCCTCTTGTAGTATCGTAGGCAATCTTCCGGCATTTGGAAGCTGTAAATCCATATCTGTTATTGAATTGAACATGAACAGTTTATCAGGGGGTGTTCCAGACAGTGTTTCTAGCTGCCGAGCTCTTGAGAGATTTGGTTTGGCCAGCAATAACTTATCAGGTCATATACCTGAGGAGCTTGCAAGTCTTCCTGCTCTGCGTGTCCTAGACCTATCACATAATAGTTTGGATGGACCAATACCTTCAAAGTTTGGTTCTTCTTCCAGCTTATCACTTCTGAATGTGTCTTTCAATGATATTTCTGGGACAATTCCCTCTGGAAAGGTAGTGAAGACTATGGGAAGTAGCGCATTCGTTGGAAATCCAAAGCTATGTGGAGAGCCTTTGAGATCATGTCCCGGTTCAGTGGCTATCTTCGGAAGCAGAGGCACCGGGAAGCTTATATGGGTCTTGCTACTGTGTGCAGGCATAGTTATGTTCCTTGCTCTGTCAGCTCTAGGAGTACTTTATTTTTATAAAGGCAGCAAAGGCCAATGGAAGATGGTCTCATTTGCTGGACTCCCTCAATTCACAGCAAGCGATGTATTGAAGAGCTTCAGTTCCATAGAATCCATGGATGATGCATTGTCCCCGACGTCAGCACCAGTATGCAAAGCGGTTCTGCCAACAGGAATCACAGTTTCAGTGAAGAAGTTTGAATGCGATCCGAAGCTAGTGAATGTTATGTTGCCATTCATAACCCGAATTGGGAGTGCAAGGCATAAGAATCTAATCCGATTGCTCGGATTTTGCTACAACAAGTATCTGGTTTATCTCTTGTACGATTACTTGCCCAACGGAAGTTTATCAGAAAATATAAGAGTGAAAAGGGAATGGGCAGCTAAGTACAAAATTGTGGTGAGCATTGCAAGGGGATTGTGCTTCCTTCACCATGAATGTCATCCTGCAATTGGTCATGGAGACTTGAGATCAAGTAATATAATGTTTGACGAAAACATGGAACCGCATCTGACAGAATTCGGATTCAAGCATCTGCTGGAGTTGAACAAAACTTCAGGTACTGCAGAGACCTCCACCATGGATACAGGTGCTGCAAACAGTTCTGTAGAAGAGGAGCTATACAGAGATGTATACAGCTTTGGGGAGATCATGCTCGAAATTTTATCCAACGGCAGGTTGACGAATTCAGGAGCAAGCTTACATAGCAAGTCGAGGGAAAGTGTTCTCAGAGAAATAATCAATGAGAATGAAGTTGGTTCTAACACTTCAGTGCAACAGGAGATAAAAAGGGTGCTCGAGGTAGCTACGCTCTGCACTAGGAGCCGACCATCTGATCGACCATCCATGGAGGATACATTAAAGCTTTTACAGGCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

978

Amino Acids

106.49

Weight (kDa)

5.67

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	194 - 302	9.5e-09	Leucine-rich repeat region
LRR_14	PF23598	309 - 400	2.5e-07	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	743 - 972	9.9e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	765 - 972	3.6e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51350
fragaria_vesca	FvH4_1g01520
malus_domestica	MD02G1012000.v1.1 MD15G1157800.v1.1
prunus_persica	Prupe.7G253000_v2.0.a1
pyrus_communis	pycom02g01130 pycom15g14160
rosa_chinensis	RchiOBHm_Chr2g0086441
rosa_laevigata	RLG00000015759
rosa_multiflora	Rmu_sc0005127.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154570
rosa_rugosa	Rorug01G0467300
rosa_samantha	Rh2AG018100 Rh2BG017600 Rh2CG018500 Rh2DG019400
rosa_wichuraiana	Rw2G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2073
AatII	GACGTC	1 cut(s)	2195
Acc36I	ACCTGC	1 cut(s)	2721
AccB1I	GGYRCC	1 cut(s)	1985
AccI	GTMKAC	3 cut(s)	1196, 1404, 2688
AccIII	TCCGGA	1 cut(s)	356
AciI	CCGC	2 cut(s)	2213, 2561
AclWI	GGATC	5 cut(s)	934, 981, 997, 1357, 2255
AcoI	YGGCCR	3 cut(s)	450, 493, 1698
AcsI	RAATTY	5 cut(s)	1373, 1546, 2573, 2715, 2740
AcuI	CTGAAG	9 cut(s)	352, 578, 803, 892, 1101, 1526, 2137, 2595, 2808
AcyI	GRCGYC	1 cut(s)	2192
AfaI	GTAC	5 cut(s)	1472, 2061, 2378, 2444, 2617
AfiI	CCNNNNNNNGG	8 cut(s)	273, 728, 1183, 1499, 1592, 2304, 2507, 2730
AjnI	CCWGG	3 cut(s)	235, 447, 777
AleI	CACNNNNGTG	1 cut(s)	2825
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
Alw21I	GWGCWC	4 cut(s)	195, 1251, 1681, 2853
Alw26I	GTCTC	7 cut(s)	161, 591, 900, 1103, 2107, 2511, 2618
AlwI	GGATC	5 cut(s)	934, 981, 997, 1357, 2255
AlwNI	CAGNNNCTG	3 cut(s)	152, 2618, 2648
Ama87I	CYCGRG	1 cut(s)	2852
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	5 cut(s)	450, 493, 998, 1698, 2086
ApeKI	GCWGC	7 cut(s)	137, 149, 1215, 1671, 2079, 2435, 2648
ApoI	RAATTY	5 cut(s)	1373, 1546, 2573, 2715, 2740
Asp700I	GAANNNNTTC	3 cut(s)	485, 2150, 2778
AspLEI	GCGC	1 cut(s)	1907
AspS9I	GGNCC	4 cut(s)	607, 638, 998, 1790
AsuC2I	CCSGG	4 cut(s)	997, 1007, 1956, 1990
AsuHPI	GGTGA	5 cut(s)	7, 436, 1370, 2467, 2477
AsuII	TTCGAA	1 cut(s)	1271
AvaI	CYCGRG	1 cut(s)	2852
AvaII	GGWCC	3 cut(s)	607, 638, 1790
AxyI	CCTNAGG	1 cut(s)	1728
BaeGI	GKGCMC	1 cut(s)	1508
BalI	TGGCCA	2 cut(s)	452, 1700
BanI	GGYRCC	1 cut(s)	1985
BanII	GRGCYC	2 cut(s)	195, 1681
BarI	GAAGNNNNNNTAC	2 cut(s)	1566, 1598
BbsI	GAAGAC	4 cut(s)	1007, 1322, 1736, 1895
Bbv12I	GWGCWC	4 cut(s)	195, 1251, 1681, 2853
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	7 cut(s)	149, 161, 1227, 1658, 2091, 2447, 2635
BccI	CCATC	6 cut(s)	256, 1306, 1781, 2092, 2893, 2905
BceAI	ACGGC	1 cut(s)	2743
BciT130I	CCWGG	3 cut(s)	237, 449, 779
BciVI	GTATCC	2 cut(s)	2632, 2902
BcnI	CCSGG	4 cut(s)	997, 1007, 1956, 1990
BcoDI	GTCTC	7 cut(s)	161, 591, 900, 1103, 2107, 2511, 2618
BfaI	CTAG	9 cut(s)	320, 617, 650, 1019, 1668, 1763, 2054, 2270, 2874
BfmI	CTRYAG	3 cut(s)	135, 2619, 2661
BfuAI	ACCTGC	1 cut(s)	2721
BfuI	GTATCC	2 cut(s)	2632, 2902
BisI	GCNGC	7 cut(s)	138, 150, 1216, 1672, 2080, 2436, 2649
BlpI	GCTNAGC	1 cut(s)	1092
BlsI	GCNGC	7 cut(s)	139, 151, 1217, 1673, 2081, 2437, 2650
BmcAI	AGTACT	2 cut(s)	1472, 2061
Bme1390I	CCNGG	7 cut(s)	237, 449, 779, 997, 1007, 1956, 1990
Bme18I	GGWCC	3 cut(s)	607, 638, 1790
BmeT110I	CYCGRG	1 cut(s)	2852
BmgT120I	GGNCC	4 cut(s)	607, 638, 998, 1790
BmiI	GGNNCC	5 cut(s)	10, 639, 1987, 2559, 2879
BmrFI	CCNGG	7 cut(s)	237, 449, 779, 997, 1007, 1956, 1990
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	7 cut(s)	519, 532, 795, 1251, 2167, 2572, 2596
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	4 cut(s)	1007, 1322, 1736, 1895
BpmI	CTGGAG	2 cut(s)	1127, 2615
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	1092
Bpu14I	TTCGAA	1 cut(s)	1271
BpuEI	CTTGAG	6 cut(s)	587, 695, 911, 1487, 1703, 2542
BpuMI	CCSGG	4 cut(s)	997, 1007, 1956, 1990
BsaHI	GRCGYC	1 cut(s)	2192
BsaI	GGTCTC	3 cut(s)	161, 2107, 2618
BsaJI	CCNNGG	6 cut(s)	447, 778, 791, 2169, 2634, 2901
BsaWI	WCCGGW	2 cut(s)	356, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	8 cut(s)	273, 728, 1183, 1499, 1592, 2304, 2507, 2730
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	9 cut(s)	227, 315, 438, 496, 935, 1110, 1432, 1535, 2201
Bse21I	CCTNAGG	1 cut(s)	1728
Bse3DI	GCAATG	1 cut(s)	2460
BseAI	TCCGGA	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	237, 449, 779
BseDI	CCNNGG	6 cut(s)	447, 778, 791, 2169, 2634, 2901
BseGI	GGATG	5 cut(s)	786, 1792, 2179, 2497, 2897
BseLI	CCNNNNNNNGG	8 cut(s)	273, 728, 1183, 1499, 1592, 2304, 2507, 2730
BseMI	GCAATG	1 cut(s)	2460
BseNI	ACTGG	9 cut(s)	227, 315, 438, 496, 935, 1110, 1432, 1535, 2201
BseRI	GAGGAG	3 cut(s)	295, 1745, 2684
BseSI	GKGCMC	1 cut(s)	1508
BseXI	GCAGC	7 cut(s)	149, 161, 1227, 1658, 2091, 2447, 2635
BseYI	CCCAGC	2 cut(s)	502, 620
BsgI	GTGCAG	3 cut(s)	1500, 2040, 2854
BshFI	GGCC	5 cut(s)	452, 495, 1000, 1700, 2088
BshNI	GGYRCC	1 cut(s)	1985
BsiHKAI	GWGCWC	4 cut(s)	195, 1251, 1681, 2853
BsiHKCI	CYCGRG	1 cut(s)	2852
BslFI	GGGAC	4 cut(s)	51, 1876, 1938, 2170
BslI	CCNNNNNNNGG	8 cut(s)	273, 728, 1183, 1499, 1592, 2304, 2507, 2730
BsmAI	GTCTC	7 cut(s)	161, 591, 900, 1103, 2107, 2511, 2618
BsmFI	GGGAC	4 cut(s)	51, 1876, 1938, 2170
BsmI	GAATGC	4 cut(s)	545, 1218, 1907, 2261
BsnI	GGCC	5 cut(s)	452, 495, 1000, 1700, 2088
Bso31I	GGTCTC	3 cut(s)	161, 2107, 2618
BsoBI	CYCGRG	1 cut(s)	2852
Bsp119I	TTCGAA	1 cut(s)	1271
Bsp1286I	GDGCHC	5 cut(s)	195, 1251, 1508, 1681, 2853
Bsp13I	TCCGGA	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	1092
Bsp19I	CCATGG	3 cut(s)	2169, 2634, 2901
BspACI	CCGC	2 cut(s)	2213, 2561
BspANI	GGCC	5 cut(s)	452, 495, 1000, 1700, 2088
BspEI	TCCGGA	1 cut(s)	356
BspLI	GGNNCC	5 cut(s)	10, 639, 1987, 2559, 2879
BspMAI	CTGCAG	2 cut(s)	139, 2623
BspMI	ACCTGC	1 cut(s)	2721
BspPI	GGATC	5 cut(s)	934, 981, 997, 1357, 2255
BspQI	GCTCTTC	1 cut(s)	2141
BspT104I	TTCGAA	1 cut(s)	1271
BspT107I	GGYRCC	1 cut(s)	1985
BspTNI	GGTCTC	3 cut(s)	161, 2107, 2618
BsrDI	GCAATG	1 cut(s)	2460
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	9 cut(s)	227, 315, 438, 496, 935, 1110, 1432, 1535, 2201
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	6 cut(s)	447, 778, 791, 2169, 2634, 2901
BssNAI	GTATAC	1 cut(s)	2689
BssNI	GRCGYC	1 cut(s)	2192
BssT1I	CCWWGG	4 cut(s)	791, 2169, 2634, 2901
Bst1107I	GTATAC	1 cut(s)	2689
Bst2UI	CCWGG	3 cut(s)	237, 449, 779
Bst4CI	ACNGT	7 cut(s)	745, 1041, 1637, 1661, 2016, 2236, 2657
Bst6I	CTCTTC	5 cut(s)	329, 911, 1119, 2141, 2661
BstACI	GRCGYC	1 cut(s)	2192
BstBI	TTCGAA	1 cut(s)	1271
BstDSI	CCRYGG	3 cut(s)	2169, 2634, 2901
BstF5I	GGATG	5 cut(s)	786, 1792, 2179, 2497, 2897
BstHHI	GCGC	1 cut(s)	1907
BstMAI	GTCTC	7 cut(s)	161, 591, 900, 1103, 2107, 2511, 2618
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 1255, 2048, 2085, 2760, 2877
BstNI	CCWGG	3 cut(s)	237, 449, 779
BstSCI	CCNGG	7 cut(s)	235, 447, 777, 995, 1005, 1954, 1988
BstSFI	CTRYAG	3 cut(s)	135, 2619, 2661
BstSLI	GKGCMC	1 cut(s)	1508
BstV1I	GCAGC	7 cut(s)	149, 161, 1227, 1658, 2091, 2447, 2635
BstV2I	GAAGAC	4 cut(s)	1007, 1322, 1736, 1895
BstX2I	RGATCY	2 cut(s)	973, 1362
BstXI	CCANNNNNNTGG	1 cut(s)	923
BstYI	RGATCY	2 cut(s)	973, 1362
BstZ17I	GTATAC	1 cut(s)	2689
Bsu36I	CCTNAGG	1 cut(s)	1728
BsuI	GTATCC	2 cut(s)	2632, 2902
BsuRI	GGCC	5 cut(s)	452, 495, 1000, 1700, 2088
BtgI	CCRYGG	3 cut(s)	2169, 2634, 2901
BtgZI	GCGATG	1 cut(s)	2151
BtsCI	GGATG	5 cut(s)	786, 1792, 2179, 2497, 2897
BtsI	GCAGTG	1 cut(s)	569
BveI	ACCTGC	1 cut(s)	2721
CaiI	CAGNNNCTG	3 cut(s)	152, 2618, 2648
CfoI	GCGC	1 cut(s)	1907
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	4 cut(s)	607, 638, 998, 1790
Csp6I	GTAC	5 cut(s)	1471, 2060, 2377, 2443, 2616
CspCI	CAANNNNNGTGG	6 cut(s)	708, 743, 918, 953, 1140, 1175
CviQI	GTAC	5 cut(s)	1471, 2060, 2377, 2443, 2616
EaeI	YGGCCR	3 cut(s)	450, 493, 1698
Eam1104I	CTCTTC	5 cut(s)	329, 911, 1119, 2141, 2661
EarI	CTCTTC	5 cut(s)	329, 911, 1119, 2141, 2661
Ecl136II	GAGCTC	2 cut(s)	193, 1679
Eco130I	CCWWGG	4 cut(s)	791, 2169, 2634, 2901
Eco24I	GRGCYC	2 cut(s)	195, 1681
Eco31I	GGTCTC	3 cut(s)	161, 2107, 2618
Eco32I	GATATC	1 cut(s)	1231
Eco47I	GGWCC	3 cut(s)	607, 638, 1790
Eco53kI	GAGCTC	2 cut(s)	193, 1679
Eco57I	CTGAAG	9 cut(s)	352, 578, 803, 892, 1101, 1526, 2137, 2595, 2808
Eco81I	CCTNAGG	1 cut(s)	1728
Eco88I	CYCGRG	1 cut(s)	2852
EcoICRI	GAGCTC	2 cut(s)	193, 1679
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRI	GAATTC	2 cut(s)	2573, 2740
EcoRII	CCWGG	3 cut(s)	235, 447, 777
EcoRV	GATATC	1 cut(s)	1231
EcoT14I	CCWWGG	4 cut(s)	791, 2169, 2634, 2901
EcoT22I	ATGCAT	3 cut(s)	6, 547, 2182
EcoT38I	GRGCYC	2 cut(s)	195, 1681
ErhI	CCWWGG	4 cut(s)	791, 2169, 2634, 2901
FaqI	GGGAC	4 cut(s)	51, 1876, 1938, 2170
FauNDI	CATATG	2 cut(s)	753, 1399
FblI	GTMKAC	3 cut(s)	1196, 1404, 2688
Fnu4HI	GCNGC	7 cut(s)	138, 150, 1216, 1672, 2080, 2436, 2649
FokI	GGATG	5 cut(s)	773, 1799, 2186, 2484, 2884
FriOI	GRGCYC	2 cut(s)	195, 1681
Fsp4HI	GCNGC	7 cut(s)	138, 150, 1216, 1672, 2080, 2436, 2649
FspBI	CTAG	9 cut(s)	320, 617, 650, 1019, 1668, 1763, 2054, 2270, 2874
GlaI	GCGC	1 cut(s)	1906
GluI	GCNGC	7 cut(s)	138, 150, 1216, 1672, 2080, 2436, 2649
GsaI	CCCAGC	2 cut(s)	506, 624
GsuI	CTGGAG	2 cut(s)	1127, 2615
HaeIII	GGCC	5 cut(s)	452, 495, 1000, 1700, 2088
HhaI	GCGC	1 cut(s)	1907
Hin1I	GRCGYC	1 cut(s)	2192
Hin6I	GCGC	1 cut(s)	1905
HinP1I	GCGC	1 cut(s)	1905
HincII	GTYRAC	2 cut(s)	364, 2736
HindII	GTYRAC	2 cut(s)	364, 2736
HindIII	AAGCTT	7 cut(s)	463, 887, 967, 1463, 1994, 2752, 2918
HphI	GGTGA	5 cut(s)	7, 436, 1370, 2467, 2477
Hpy166II	GTNNAC	7 cut(s)	364, 444, 950, 1197, 1405, 2689, 2736
Hpy8I	GTNNAC	7 cut(s)	364, 444, 950, 1197, 1405, 2689, 2736
Hpy99I	CGWCG	1 cut(s)	2194
HpyAV	CCTTC	6 cut(s)	106, 182, 1076, 1110, 1809, 2492
HpyCH4III	ACNGT	7 cut(s)	745, 1041, 1637, 1661, 2016, 2236, 2657
HpyCH4IV	ACGT	1 cut(s)	2192
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 1255, 2048, 2085, 2760, 2877
HpySE526I	ACGT	1 cut(s)	2192
Hsp92I	GRCGYC	1 cut(s)	2192
HspAI	GCGC	1 cut(s)	1905
Kpn2I	TCCGGA	1 cut(s)	356
LguI	GCTCTTC	1 cut(s)	2141
LmnI	GCTCC	7 cut(s)	432, 624, 1462, 1732, 2671, 2747, 2877
Lsp1109I	GCAGC	7 cut(s)	149, 161, 1227, 1658, 2091, 2447, 2635
LweI	GCATC	7 cut(s)	519, 532, 795, 1251, 2167, 2572, 2596
MaeI	CTAG	9 cut(s)	320, 617, 650, 1019, 1668, 1763, 2054, 2270, 2874
MaeII	ACGT	1 cut(s)	2192
MaeIII	GTNAC	4 cut(s)	310, 404, 567, 745
MfeI	CAATTG	3 cut(s)	797, 1309, 2505
MflI	RGATCY	2 cut(s)	973, 1362
MhlI	GDGCHC	5 cut(s)	195, 1251, 1508, 1681, 2853
MlsI	TGGCCA	2 cut(s)	452, 1700
MluNI	TGGCCA	2 cut(s)	452, 1700
MlyI	GAGTC	8 cut(s)	346, 369, 742, 863, 902, 1054, 1105, 2109
MmeI	TCCRAC	3 cut(s)	1197, 1894, 2748
Mox20I	TGGCCA	2 cut(s)	452, 1700
Mph1103I	ATGCAT	3 cut(s)	6, 547, 2182
MroI	TCCGGA	1 cut(s)	356
MroXI	GAANNNNTTC	3 cut(s)	485, 2150, 2778
MscI	TGGCCA	2 cut(s)	452, 1700
MseI	TTAA	5 cut(s)	23, 458, 1254, 1476, 2915
MslI	CAYNNNNRTG	4 cut(s)	1522, 2030, 2203, 2825
Msp20I	TGGCCA	2 cut(s)	452, 1700
MspA1I	CMGCKG	3 cut(s)	140, 152, 506
MspR9I	CCNGG	7 cut(s)	237, 449, 779, 997, 1007, 1956, 1990
MunI	CAATTG	3 cut(s)	797, 1309, 2505
Mva1269I	GAATGC	4 cut(s)	545, 1218, 1907, 2261
MvaI	CCWGG	3 cut(s)	237, 449, 779
MwoI	GCNNNNNNNGC	6 cut(s)	146, 1255, 2048, 2085, 2760, 2877
NciI	CCSGG	4 cut(s)	997, 1007, 1956, 1990
NcoI	CCATGG	3 cut(s)	2169, 2634, 2901
NdeI	CATATG	2 cut(s)	753, 1399
NlaIV	GGNNCC	5 cut(s)	10, 639, 1987, 2559, 2879
NmeAIII	GCCGAG	1 cut(s)	1700
NmuCI	GTSAC	2 cut(s)	567, 745
NsiI	ATGCAT	3 cut(s)	6, 547, 2182
NspV	TTCGAA	1 cut(s)	1271
OliI	CACNNNNGTG	1 cut(s)	2825
PaeR7I	CTCGAG	1 cut(s)	2852
PciSI	GCTCTTC	1 cut(s)	2141
PctI	GAATGC	4 cut(s)	545, 1218, 1907, 2261
PdmI	GAANNNNTTC	3 cut(s)	485, 2150, 2778
PfeI	GAWTC	9 cut(s)	598, 613, 877, 1144, 1435, 2165, 2229, 2323, 2580
PfoI	TCCNGGA	2 cut(s)	235, 1005
PkrI	GCNGC	7 cut(s)	139, 151, 1217, 1673, 2081, 2437, 2650
PleI	GAGTC	8 cut(s)	345, 368, 742, 862, 901, 1053, 1105, 2109
PpsI	GAGTC	8 cut(s)	345, 368, 742, 862, 901, 1053, 1105, 2109
PpuMI	RGGWCCY	1 cut(s)	607
PsiI	TTATAA	1 cut(s)	2073
Psp124BI	GAGCTC	2 cut(s)	195, 1681
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	235, 447, 777
PspFI	CCCAGC	2 cut(s)	502, 620
PspGI	CCWGG	3 cut(s)	235, 447, 777
PspN4I	GGNNCC	5 cut(s)	10, 639, 1987, 2559, 2879
PspPI	GGNCC	4 cut(s)	607, 638, 998, 1790
PspPPI	RGGWCCY	1 cut(s)	607
PspXI	VCTCGAGB	1 cut(s)	2852
PsrI	GAACNNNNNNTAC	2 cut(s)	389, 421
PstI	CTGCAG	2 cut(s)	139, 2623
PstNI	CAGNNNCTG	3 cut(s)	152, 2618, 2648
PsuI	RGATCY	2 cut(s)	973, 1362
PvuII	CAGCTG	3 cut(s)	140, 152, 506
RsaI	GTAC	5 cut(s)	1472, 2061, 2378, 2444, 2617
RsaNI	GTAC	5 cut(s)	1471, 2060, 2377, 2443, 2616
RseI	CAYNNNNRTG	4 cut(s)	1522, 2030, 2203, 2825
SacI	GAGCTC	2 cut(s)	195, 1681
SapI	GCTCTTC	1 cut(s)	2141
SaqAI	TTAA	5 cut(s)	23, 458, 1254, 1476, 2915
SatI	GCNGC	7 cut(s)	138, 150, 1216, 1672, 2080, 2436, 2649
Sau96I	GGNCC	4 cut(s)	607, 638, 998, 1790
ScaI	AGTACT	2 cut(s)	1472, 2061
SchI	GAGTC	8 cut(s)	346, 369, 742, 863, 902, 1054, 1105, 2109
ScrFI	CCNGG	7 cut(s)	237, 449, 779, 997, 1007, 1956, 1990
SduI	GDGCHC	5 cut(s)	195, 1251, 1508, 1681, 2853
SfaNI	GCATC	7 cut(s)	519, 532, 795, 1251, 2167, 2572, 2596
SfcI	CTRYAG	3 cut(s)	135, 2619, 2661
Sfr274I	CTCGAG	1 cut(s)	2852
SfuI	TTCGAA	1 cut(s)	1271
SinI	GGWCC	3 cut(s)	607, 638, 1790
SlaI	CTCGAG	1 cut(s)	2852
SmiMI	CAYNNNNRTG	4 cut(s)	1522, 2030, 2203, 2825
SmlI	CTYRAG	7 cut(s)	602, 674, 890, 1466, 1682, 2521, 2852
SmoI	CTYRAG	7 cut(s)	602, 674, 890, 1466, 1682, 2521, 2852
SsiI	CCGC	2 cut(s)	2213, 2561
SspMI	CTAG	9 cut(s)	320, 617, 650, 1019, 1668, 1763, 2054, 2270, 2874
SstI	GAGCTC	2 cut(s)	195, 1681
StyD4I	CCNGG	7 cut(s)	235, 447, 777, 995, 1005, 1954, 1988
StyI	CCWWGG	4 cut(s)	791, 2169, 2634, 2901
TaaI	ACNGT	7 cut(s)	745, 1041, 1637, 1661, 2016, 2236, 2657
TaiI	ACGT	1 cut(s)	2195
TaqI	TCGA	6 cut(s)	1271, 2712, 2768, 2853, 2893, 2932
TatI	WGTACW	3 cut(s)	1470, 2059, 2442
TfiI	GAWTC	9 cut(s)	598, 613, 877, 1144, 1435, 2165, 2229, 2323, 2580
Tru1I	TTAA	5 cut(s)	23, 458, 1254, 1476, 2915
Tru9I	TTAA	5 cut(s)	23, 458, 1254, 1476, 2915
TseFI	GTSAC	2 cut(s)	567, 745
TseI	GCWGC	7 cut(s)	137, 149, 1215, 1671, 2079, 2435, 2648
Tsp45I	GTSAC	2 cut(s)	567, 745
TspDTI	ATGAA	8 cut(s)	115, 674, 1002, 1386, 1646, 2281, 2505, 2820
TspGWI	ACGGA	1 cut(s)	2409
VpaK11BI	GGWCC	3 cut(s)	607, 638, 1790
XapI	RAATTY	5 cut(s)	1373, 1546, 2573, 2715, 2740
XbaI	TCTAGA	2 cut(s)	319, 1018
XcmI	CCANNNNNNNNNTGG	2 cut(s)	503, 2167
XhoI	CTCGAG	1 cut(s)	2852
XmiI	GTMKAC	3 cut(s)	1196, 1404, 2688
XmnI	GAANNNNTTC	3 cut(s)	485, 2150, 2778
XspI	CTAG	9 cut(s)	320, 617, 650, 1019, 1668, 1763, 2054, 2270, 2874
ZraI	GACGTC	1 cut(s)	2193
ZrmI	AGTACT	2 cut(s)	1472, 2061
Zsp2I	ATGCAT	3 cut(s)	6, 547, 2182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.