Rh2DG048300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008072
Physical Location & Seq
Reverse (-)
3451408 .. 3459136
7729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG048300.1

Sequence Viewer

Length: 3393 bp
ATGTGGAACTCGGCGGAGAACGCGTTTGCGAGGACGGCGTCGTTTCGGGTGGAGGGGGAGGACGAGGAGGCGCTGCGGTGGGCGGCGCTGGAGAGGCTGCCGACATACTCCAGAGTCCGACGTGGCATTTTCAAGAACAATGTGGGAGACACCAAGGAGGTTGACGTCAGCGAGCTGGAGGGTCAGGAGCTGAAGCTACTGCTTGATCGGCTTGTCATCTCGGCTGAAGATGACCCCGAGCACTTCTTTGAGAAAATGCGACTCAGATTTAACGCAGTAGATTTGGAGTTTCCGAAGATCGAGGTGCGGTTTCAGAATTTGAACGTTGAAGCTTTCGTCCATGTGGGAAGCAGAGCACTGCCAACTATTCCCAATTTCGTATTCAATATGACCGAGGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCAGTCAACAGGACTGGTTTGCGGCGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCTGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGCAAGAGACAAGCCTTGTTGTAGAGTACATCATGAAGATTTTAGGGTTGGACATATGCGCTGATACGTTGGTAGGAGACGAAATGCTTAAAGGTATATCAGGGGGCCAAAAGAAGCGGCTTACTACAGGTGAATTACTAGTAGGTCCAGCAAGAGTGTTGTTCATGGATGAAATATCAACTGGGCTCGATAGTTCCACTACTTATCAAATAATCAAATATCTTAGGCATTCAACTCGTGCACTTGATTCCACCACTGTTATATCTCTGCTTCAACCTGCTCCAGAGACCTACGAGTTGTTTGATGATGTTATACTTTTGTGTGAGGGCCAGATAGTGTTTCAGGGACCCCGGGAATCTGCACTTGATTTCTTTTCATACATGGGGTTTAGATGTCCCCGCCGAAAGAATGTGGCAGACTTCTTGCAAGAAGTTATATCAAAGAAGGACCAAGAGCAGTACTGGTCCAATCCTGATCTTCCATACCGCTATATACCACCAGCAAAGTTTGTTGAAGCTTTTCCTTCATTTCAAGATGGGAAGAATTTGTCTGCAGAGTTGAAAGTTCCTTTTGATAAACGCTATAACCACCCTGCAGCTTTGGCGACTTCTCTCTATGGCATGAAGAGGAAGGAGCTTCTGAAGACAAGCTTTAACTGGCAAGTGCTACTGATGAAGCGGAATGCATTTATTTATATTTTCAAATTTGTTCAGCTTCTTTTGGTTGCTTTGATCACAATGAGTGTCTTCTGCCGGACAAAAATGCACCATGATACAATTGATGATGGAGGCTTATATCTCGGGGCACTATACTTTTCCATGGTTATTATTCTTTTTAATGGCTTTACGGAGGTGCCAATGTTGGTGGCCAAGCTTCCAGTGCTTTACAAGCATAGGGACTTACACTTCTACCCAAGTTGGGTCTATACTCTTCCTTCCTGGCTCTTGAGTATTCCAAATTCACTCATAGAGTCTGGACTTTGGGTGGCAATCACATACTACGTCATTGGATATGATCCCGCAATTTCTAGATTTTTTGGGCAGTTCTTGGTATATTTCCTTCTGCACCAGATGTCCACAGCTCTCTTTCGTCTTATGGGATCCTTGGGTCGAAATATGATAGTTGCCAACACCTTTGGATCTTTTGCCATGTTGGTTGTAATGGCTCTTGGAGGATACATCGTCTCTAGAGATCATATACCAAAATGGTGGATTTGGGGTTTCTGGTTTTCTCCTTTGATGTATGCTCAAAATGCTGCTTCTGTAAATGAATTCCTTGGACACTCCTGGAGCACGGAACATGGGCATGAGACCGGTCTTTCATTAGGTCAGTCATTACTAAAAGCACGCAGTTTGTTTCCAGAGAGATACTGGTATTGGATTGGTGCTGGTGCTTTGCTCGGCTATACAGTTTTATTCAATTTACTATTCACATTCTTCCTTGCTTACCTCAACCCCTTGGGGAAGCAACAAGCTGTTGTGTCTAAGGAAGAGCTGGAAGAGAGAGAAAGGAGAAGAAAAGGAGAAAGTGTTGTTATTGAGCTGAGACAGTACTTGAATCATTCACAGTCACTTAATGGAAAATACTTTAAGCAGAGAGGAATGGTCCTCCCATTTCAGCCACTTTCCATGTCTTTCAGCAATATCAATTACTACGTTGATGTCCCTCTGGAATTGAAGCAGCAGGGAATTCAAGAAGAGAGATTGCAGCTCTTGGTTGATGTCACTGGAGCATTTAGGCCGGGGGTGCTTACAGCATTGGTTGGAGTCAGTGGTGCTGGTAAAACCACCCTCATGGACGTATTGGCTGGTCGAAAAACTGGTGGGGTTATAGAAGGAAGCATACATATATCTGGTCATCCAAAAAGACAAGAAACTTTTGCAAGAATTTCGGGTTACTGCGAGCAATCTGATATTCACTCCCCGTGCTTGACTGTTGTTGAATCGCTTCTGTTCTCTGTTTGGCTTCGCTTGCCATCAGATGTTAACTTGGATACACGGAAGGCTTTTGTAGAGGAGGTGATGGAACTTGTGGAGCTCACTCCATTAAGTGGGGCACTGGTTGGTTTACCGGGGGTGAATGGCTTGTCAACAGAACAACGAAAAAGGCTAACTATAGCAGTGGAGCTGGTCGCTAATCCATCTATAGTATTCATGGATGAACCCACATCTGGGTTAGATGCAAGGTCTGCAGCCATTGTGATGAGGACTGTGAGGAATATAGTCGATACTGGACGTACTATCGTATGCACAATCCACCAGCCTAGCATAGACATTTTTGAATCCTTTGATGAGCTTCTGTTTTTGAAGCGTGGCGGTCAGCTCATATATGCTGGTCCACTTGGACCCAACTCTTGTGAACTCATCAAGTACTTTGAGGCAATTGAAGGAGTGCAAAAGATCAGGCCTGGATATAATCCTGCTGCATGGATGCTTGATGTTACTTCTTCAACTGAAGAAATCCGTCTGGGGGTGGATTTTGCAGAAATTTACAGAAGATCAAATTTGTTTCAGTACGAACACTTCTCCATGAATTTTAGCTGGTTAGCTTTTATGTGTTTCTTCATCTAA

Protein Analysis

1130

Amino Acids

127.88

Weight (kDa)

6.62

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 74 - 126 2e-07 ABC-transporter N-terminal
ABC_tran PF00005 151 - 333 1.3e-14 ABC transporter
ABC2_membrane PF01061 488 - 699 2.5e-48 ABC-2 type transporter
PDR_assoc PF08370 704 - 768 7.3e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 848 - 998 7.2e-19 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AatII GACGTC 2 cut(s) 168, 632
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 1675
AccB7I CCANNNNNTGG 1 cut(s) 2873
AccII CGCG 1 cut(s) 23
AclI AACGTT 1 cut(s) 324
AclWI GGATC 4 cut(s) 1832, 1917, 1930, 1969
AcoI YGGCCR 2 cut(s) 595, 1689
AcuI CTGAAG 5 cut(s) 212, 246, 551, 1484, 3297
AcyI GRCGYC 4 cut(s) 38, 165, 550, 629
AfaI GTAC 6 cut(s) 851, 1283, 2375, 3061, 3194, 3338
AfiI CCNNNNNNNGG 6 cut(s) 515, 1741, 2873, 2993, 2994, 3292
AflIII ACRYGT 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 2135
AhlI ACTAGT 1 cut(s) 961
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 3 cut(s) 1760, 2108, 3229
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
Alw21I GWGCWC 6 cut(s) 243, 358, 515, 1066, 2117, 2862
Alw26I GTCTC 8 cut(s) 141, 677, 824, 894, 1103, 2011, 2126, 2362
Alw44I GTGCAC 1 cut(s) 1062
AlwI GGATC 4 cut(s) 1832, 1917, 1930, 1969
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 3 cut(s) 236, 1173, 1622
AoxI GGCC 6 cut(s) 595, 928, 1150, 1689, 2561, 3227
ApaLI GTGCAC 1 cut(s) 1062
ApeKI GCWGC 8 cut(s) 73, 97, 1418, 2078, 2503, 2530, 3014, 3245
AsiGI ACCGGT 1 cut(s) 2135
Asp700I GAANNNNTTC 2 cut(s) 1341, 2769
AspLEI GCGC 3 cut(s) 73, 88, 884
AsuC2I CCSGG 4 cut(s) 1174, 1175, 2565, 2895
AsuHPI GGTGA 4 cut(s) 797, 965, 2854, 2911
AvaI CYCGRG 3 cut(s) 236, 1173, 1622
AvaII GGWCC 8 cut(s) 503, 968, 1169, 1270, 1287, 2428, 3158, 3167
BaeGI GKGCMC 3 cut(s) 1066, 1630, 2881
BaeI ACNNNNGTAYC 2 cut(s) 879, 912
BalI TGGCCA 2 cut(s) 597, 1691
BamHI GGATCC 1 cut(s) 1922
BanI GGYRCC 1 cut(s) 1675
BanII GRGCYC 3 cut(s) 515, 1011, 2862
BarI GAAGNNNNNNTAC 6 cut(s) 1866, 1898, 2649, 2681, 3329, 3361
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 3 cut(s) 557, 1472, 1561
Bbv12I GWGCWC 6 cut(s) 243, 358, 515, 1066, 2117, 2862
BbvI GCAGC 8 cut(s) 60, 84, 1430, 2065, 2515, 2542, 3026, 3232
BccI CCATC 6 cut(s) 776, 1352, 1601, 2806, 2839, 2971
BceAI ACGGC 2 cut(s) 51, 431
BcgI CGANNNNNNTGC 4 cut(s) 1040, 1074, 2694, 2728
BciT130I CCWGG 3 cut(s) 1762, 2110, 3231
BciVI GTATCC 2 cut(s) 1991, 2809
BclI TGATCA 1 cut(s) 1554
BcnI CCSGG 4 cut(s) 1174, 1175, 2565, 2895
BcoDI GTCTC 8 cut(s) 141, 677, 824, 894, 1103, 2011, 2126, 2362
BcuI ACTAGT 1 cut(s) 961
BfaI CTAG 6 cut(s) 737, 746, 962, 1851, 2010, 3087
BfmI CTRYAG 6 cut(s) 948, 1374, 1416, 2937, 2967, 3012
BfoI RGCGCY 2 cut(s) 74, 89
BfuAI ACCTGC 1 cut(s) 1108
BfuI GTATCC 2 cut(s) 1991, 2809
BmcAI AGTACT 3 cut(s) 1283, 2375, 3194
Bme1390I CCNGG 7 cut(s) 1174, 1175, 1762, 2110, 2565, 2895, 3231
Bme18I GGWCC 8 cut(s) 503, 968, 1169, 1270, 1287, 2428, 3158, 3167
BmeT110I CYCGRG 3 cut(s) 236, 1173, 1622
BmgBI CACGTC 1 cut(s) 122
BmiI GGNNCC 7 cut(s) 504, 929, 1170, 1171, 1677, 1924, 3169
BmrFI CCNGG 7 cut(s) 1174, 1175, 1762, 2110, 2565, 2895, 3231
BmrI ACTGGG 1 cut(s) 1014
BmsI GCATC 2 cut(s) 2992, 3243
BmuI ACTGGG 1 cut(s) 1014
BpiI GAAGAC 3 cut(s) 557, 1472, 1561
BpmI CTGGAG 6 cut(s) 94, 110, 197, 1089, 2131, 2571
BpuEI CTTGAG 1 cut(s) 1789
BpuMI CCSGG 4 cut(s) 1174, 1175, 2565, 2895
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 4 cut(s) 38, 165, 550, 629
BsaI GGTCTC 2 cut(s) 1103, 2126
BsaWI WCCGGW 1 cut(s) 2135
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 2337, 2367
Bsc4I CCNNNNNNNGG 6 cut(s) 515, 1741, 2873, 2993, 2994, 3292
Bse118I RCCGGY 1 cut(s) 2135
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 3 cut(s) 1762, 2110, 3231
BseGI GGATG 4 cut(s) 997, 2680, 2986, 3258
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 6 cut(s) 515, 1741, 2873, 2993, 2994, 3292
BseMII CTCAG 3 cut(s) 277, 395, 2357
BseRI GAGGAG 2 cut(s) 80, 2852
BseSI GKGCMC 3 cut(s) 1066, 1630, 2881
BseXI GCAGC 8 cut(s) 60, 84, 1430, 2065, 2515, 2542, 3026, 3232
BsgI GTGCAG 2 cut(s) 1167, 1871
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 6 cut(s) 597, 930, 1152, 1691, 2563, 3229
BshNI GGYRCC 1 cut(s) 1675
BshTI ACCGGT 1 cut(s) 2135
BsiHKAI GWGCWC 6 cut(s) 243, 358, 515, 1066, 2117, 2862
BsiHKCI CYCGRG 3 cut(s) 236, 1173, 1622
BsiSI CCGG 7 cut(s) 516, 546, 1174, 1576, 2136, 2564, 2894
BslFI GGGAC 4 cut(s) 1182, 1203, 1733, 2471
BslI CCNNNNNNNGG 6 cut(s) 515, 1741, 2873, 2993, 2994, 3292
BsmAI GTCTC 8 cut(s) 141, 677, 824, 894, 1103, 2011, 2126, 2362
BsmBI CGTCTC 2 cut(s) 894, 2011
BsmFI GGGAC 4 cut(s) 1182, 1203, 1733, 2471
BsmI GAATGC 2 cut(s) 1051, 1510
BsnI GGCC 6 cut(s) 597, 930, 1152, 1691, 2563, 3229
Bso31I GGTCTC 2 cut(s) 1103, 2126
BsoBI CYCGRG 3 cut(s) 236, 1173, 1622
Bsp1286I GDGCHC 9 cut(s) 243, 358, 515, 1011, 1066, 1630, 2117, 2862, 2881
Bsp19I CCATGG 2 cut(s) 598, 1641
BspANI GGCC 6 cut(s) 597, 930, 1152, 1691, 2563, 3229
BspCNI CTCAG 3 cut(s) 276, 396, 2358
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 2 cut(s) 801, 855
BspLI GGNNCC 7 cut(s) 504, 929, 1170, 1171, 1677, 1924, 3169
BspMAI CTGCAG 3 cut(s) 1378, 1420, 3016
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 4 cut(s) 1832, 1917, 1930, 1969
BspQI GCTCTTC 1 cut(s) 2307
BspT107I GGYRCC 1 cut(s) 1675
BspTNI GGTCTC 2 cut(s) 1103, 2126
BsrFI RCCGGY 1 cut(s) 2135
BssAI RCCGGY 1 cut(s) 2135
BssNI GRCGYC 4 cut(s) 38, 165, 550, 629
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 7 cut(s) 153, 553, 598, 1641, 1926, 2098, 2280
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 3 cut(s) 1762, 2110, 3231
Bst4CI ACNGT 8 cut(s) 676, 705, 1081, 2233, 2373, 2391, 2758, 3034
Bst6I CTCTTC 6 cut(s) 748, 1442, 1758, 2307, 2316, 2514
BstACI GRCGYC 4 cut(s) 38, 165, 550, 629
BstAPI GCANNNNNTGC 1 cut(s) 3011
BstC8I GCNNGC 4 cut(s) 173, 2170, 2726, 2795
BstDEI CTNAG 5 cut(s) 263, 404, 1046, 2307, 2366
BstDSI CCRYGG 2 cut(s) 598, 1641
BstF5I GGATG 4 cut(s) 997, 2680, 2986, 3258
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 2 cut(s) 74, 89
BstHHI GCGC 3 cut(s) 73, 88, 884
BstMAI GTCTC 8 cut(s) 141, 677, 824, 894, 1103, 2011, 2126, 2362
BstNI CCWGG 3 cut(s) 1762, 2110, 3231
BstSCI CCNGG 7 cut(s) 1172, 1173, 1760, 2108, 2563, 2893, 3229
BstSFI CTRYAG 6 cut(s) 948, 1374, 1416, 2937, 2967, 3012
BstSLI GKGCMC 3 cut(s) 1066, 1630, 2881
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 8 cut(s) 60, 84, 1430, 2065, 2515, 2542, 3026, 3232
BstV2I GAAGAC 3 cut(s) 557, 1472, 1561
BstX2I RGATCY 2 cut(s) 1922, 1961
BstXI CCANNNNNNTGG 2 cut(s) 2031, 2617
BstYI RGATCY 2 cut(s) 1922, 1961
BsuI GTATCC 2 cut(s) 1991, 2809
BsuRI GGCC 6 cut(s) 597, 930, 1152, 1691, 2563, 3229
BtgI CCRYGG 2 cut(s) 598, 1641
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 4 cut(s) 997, 2680, 2986, 3258
BtsI GCAGTG 2 cut(s) 356, 2949
BtsIMutI CAGTG 7 cut(s) 356, 1077, 1707, 2547, 2599, 2879, 2949
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 4 cut(s) 173, 2170, 2726, 2795
CaiI CAGNNNCTG 1 cut(s) 190
CciI TCATGA 2 cut(s) 801, 855
CfoI GCGC 3 cut(s) 73, 88, 884
Cfr10I RCCGGY 1 cut(s) 2135
Cfr9I CCCGGG 1 cut(s) 1173
CseI GACGC 3 cut(s) 27, 535, 558
Csp6I GTAC 6 cut(s) 850, 1282, 2374, 3060, 3193, 3337
CspAI ACCGGT 1 cut(s) 2135
CspCI CAANNNNNGTGG 4 cut(s) 445, 480, 1668, 1703
CviQI GTAC 6 cut(s) 850, 1282, 2374, 3060, 3193, 3337
DdeI CTNAG 5 cut(s) 263, 404, 1046, 2307, 2366
EaeI YGGCCR 2 cut(s) 595, 1689
Eam1104I CTCTTC 6 cut(s) 748, 1442, 1758, 2307, 2316, 2514
EarI CTCTTC 6 cut(s) 748, 1442, 1758, 2307, 2316, 2514
EciI GGCGGA 2 cut(s) 29, 680
Ecl136II GAGCTC 2 cut(s) 513, 2860
Eco130I CCWWGG 7 cut(s) 153, 553, 598, 1641, 1926, 2098, 2280
Eco147I AGGCCT 1 cut(s) 3229
Eco24I GRGCYC 3 cut(s) 515, 1011, 2862
Eco31I GGTCTC 2 cut(s) 1103, 2126
Eco47I GGWCC 8 cut(s) 503, 968, 1169, 1270, 1287, 2428, 3158, 3167
Eco53kI GAGCTC 2 cut(s) 513, 2860
Eco57I CTGAAG 5 cut(s) 212, 246, 551, 1484, 3297
Eco88I CYCGRG 3 cut(s) 236, 1173, 1622
EcoICRI GAGCTC 2 cut(s) 513, 2860
EcoO109I RGGNCCY 1 cut(s) 1169
EcoRI GAATTC 2 cut(s) 2093, 2511
EcoRII CCWGG 3 cut(s) 1760, 2108, 3229
EcoT14I CCWWGG 7 cut(s) 153, 553, 598, 1641, 1926, 2098, 2280
EcoT22I ATGCAT 1 cut(s) 1510
EcoT38I GRGCYC 3 cut(s) 515, 1011, 2862
ErhI CCWWGG 7 cut(s) 153, 553, 598, 1641, 1926, 2098, 2280
Esp3I CGTCTC 2 cut(s) 894, 2011
FalI AAGNNNNNCTT 2 cut(s) 1457, 1489
FaqI GGGAC 4 cut(s) 1182, 1203, 1733, 2471
FauI CCCGC 3 cut(s) 760, 1229, 1849
FauNDI CATATG 1 cut(s) 878
FbaI TGATCA 1 cut(s) 1554
FokI GGATG 4 cut(s) 1004, 2667, 2993, 3265
FriOI GRGCYC 3 cut(s) 515, 1011, 2862
FspBI CTAG 6 cut(s) 737, 746, 962, 1851, 2010, 3087
GlaI GCGC 3 cut(s) 72, 87, 883
GsuI CTGGAG 6 cut(s) 94, 110, 197, 1089, 2131, 2571
HaeII RGCGCY 2 cut(s) 74, 89
HaeIII GGCC 6 cut(s) 597, 930, 1152, 1691, 2563, 3229
HapII CCGG 7 cut(s) 516, 546, 1174, 1576, 2136, 2564, 2894
HgaI GACGC 3 cut(s) 27, 535, 558
HhaI GCGC 3 cut(s) 73, 88, 884
Hin1I GRCGYC 4 cut(s) 38, 165, 550, 629
Hin6I GCGC 3 cut(s) 71, 86, 882
HinP1I GCGC 3 cut(s) 71, 86, 882
HincII GTYRAC 4 cut(s) 163, 647, 2809, 2913
HindII GTYRAC 4 cut(s) 163, 647, 2809, 2913
HindIII AAGCTT 4 cut(s) 330, 1338, 1471, 1694
HpaI GTTAAC 1 cut(s) 2809
HpaII CCGG 7 cut(s) 516, 546, 1174, 1576, 2136, 2564, 2894
HphI GGTGA 4 cut(s) 797, 965, 2854, 2911
Hpy188I TCNGA 9 cut(s) 119, 266, 294, 315, 405, 570, 1464, 2734, 2803
Hpy99I CGWCG 4 cut(s) 43, 123, 529, 634
HpyAV CCTTC 9 cut(s) 489, 1261, 1356, 1447, 1767, 1892, 2651, 2818, 3203
HpyCH4III ACNGT 8 cut(s) 676, 705, 1081, 2233, 2373, 2391, 2758, 3034
HpyF3I CTNAG 5 cut(s) 263, 404, 1046, 2307, 2366
Hsp92I GRCGYC 4 cut(s) 38, 165, 550, 629
HspAI GCGC 3 cut(s) 71, 86, 882
KflI GGGWCCC 1 cut(s) 1169
Ksp22I TGATCA 1 cut(s) 1554
KspAI GTTAAC 1 cut(s) 2809
LguI GCTCTTC 1 cut(s) 2307
LmnI GCTCC 9 cut(s) 187, 426, 518, 1108, 1456, 2112, 2552, 2857, 2947
Lsp1109I GCAGC 8 cut(s) 60, 84, 1430, 2065, 2515, 2542, 3026, 3232
LweI GCATC 2 cut(s) 2992, 3243
MaeI CTAG 6 cut(s) 737, 746, 962, 1851, 2010, 3087
MaeIII GTNAC 4 cut(s) 2391, 2545, 2717, 3262
MfeI CAATTG 2 cut(s) 1599, 3204
MflI RGATCY 2 cut(s) 1922, 1961
MhlI GDGCHC 9 cut(s) 243, 358, 515, 1011, 1066, 1630, 2117, 2862, 2881
MlsI TGGCCA 2 cut(s) 597, 1691
MluI ACGCGT 1 cut(s) 21
MluNI TGGCCA 2 cut(s) 597, 1691
MlyI GAGTC 5 cut(s) 123, 255, 679, 1802, 2598
MmeI TCCRAC 4 cut(s) 142, 697, 852, 2566
Mox20I TGGCCA 2 cut(s) 597, 1691
Mph1103I ATGCAT 1 cut(s) 1510
MroXI GAANNNNTTC 2 cut(s) 1341, 2769
MscI TGGCCA 2 cut(s) 597, 1691
MslI CAYNNNNRTG 3 cut(s) 2127, 2615, 3023
Msp20I TGGCCA 2 cut(s) 597, 1691
MspI CCGG 7 cut(s) 516, 546, 1174, 1576, 2136, 2564, 2894
MspR9I CCNGG 7 cut(s) 1174, 1175, 1762, 2110, 2565, 2895, 3231
MunI CAATTG 2 cut(s) 1599, 3204
Mva1269I GAATGC 2 cut(s) 1051, 1510
MvaI CCWGG 3 cut(s) 1762, 2110, 3231
MvnI CGCG 1 cut(s) 23
NciI CCSGG 4 cut(s) 1174, 1175, 2565, 2895
NcoI CCATGG 2 cut(s) 598, 1641
NdeI CATATG 1 cut(s) 878
NlaIV GGNNCC 7 cut(s) 504, 929, 1170, 1171, 1677, 1924, 3169
NmeAIII GCCGAG 2 cut(s) 200, 2202
NmuCI GTSAC 2 cut(s) 2391, 2545
NsiI ATGCAT 1 cut(s) 1510
PagI TCATGA 2 cut(s) 801, 855
PceI AGGCCT 1 cut(s) 3229
PciSI GCTCTTC 1 cut(s) 2307
PctI GAATGC 2 cut(s) 1051, 1510
PdmI GAANNNNTTC 2 cut(s) 1341, 2769
PfeI GAWTC 6 cut(s) 720, 1070, 1178, 2380, 2765, 3104
PflFI GACNNNGTC 2 cut(s) 37, 705
PflMI CCANNNNNTGG 1 cut(s) 2873
PfoI TCCNGGA 1 cut(s) 2108
PinAI ACCGGT 1 cut(s) 2135
PleI GAGTC 5 cut(s) 122, 255, 679, 1801, 2597
PpsI GAGTC 5 cut(s) 122, 255, 679, 1801, 2597
PpuMI RGGWCCY 1 cut(s) 1169
PsiI TTATAA 1 cut(s) 473
Psp124BI GAGCTC 2 cut(s) 515, 2862
Psp1406I AACGTT 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 1169
Psp6I CCWGG 3 cut(s) 1760, 2108, 3229
PspGI CCWGG 3 cut(s) 1760, 2108, 3229
PspN4I GGNNCC 7 cut(s) 504, 929, 1170, 1171, 1677, 1924, 3169
PspPPI RGGWCCY 1 cut(s) 1169
PstI CTGCAG 3 cut(s) 1378, 1420, 3016
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 1922, 1961
PsyI GACNNNGTC 2 cut(s) 37, 705
RsaI GTAC 6 cut(s) 851, 1283, 2375, 3061, 3194, 3338
RsaNI GTAC 6 cut(s) 850, 1282, 2374, 3060, 3193, 3337
RseI CAYNNNNRTG 3 cut(s) 2127, 2615, 3023
SacI GAGCTC 2 cut(s) 515, 2862
SapI GCTCTTC 1 cut(s) 2307
ScaI AGTACT 3 cut(s) 1283, 2375, 3194
SchI GAGTC 5 cut(s) 123, 255, 679, 1802, 2598
ScrFI CCNGG 7 cut(s) 1174, 1175, 1762, 2110, 2565, 2895, 3231
SduI GDGCHC 9 cut(s) 243, 358, 515, 1011, 1066, 1630, 2117, 2862, 2881
SfaNI GCATC 2 cut(s) 2992, 3243
SfcI CTRYAG 6 cut(s) 948, 1374, 1416, 2937, 2967, 3012
SinI GGWCC 8 cut(s) 503, 968, 1169, 1270, 1287, 2428, 3158, 3167
SmaI CCCGGG 1 cut(s) 1175
SmiMI CAYNNNNRTG 3 cut(s) 2127, 2615, 3023
SmlI CTYRAG 1 cut(s) 1768
SmoI CTYRAG 1 cut(s) 1768
SpeI ACTAGT 1 cut(s) 961
SseBI AGGCCT 1 cut(s) 3229
SspMI CTAG 6 cut(s) 737, 746, 962, 1851, 2010, 3087
SstI GAGCTC 2 cut(s) 515, 2862
StuI AGGCCT 1 cut(s) 3229
StyD4I CCNGG 7 cut(s) 1172, 1173, 1760, 2108, 2563, 2893, 3229
StyI CCWWGG 7 cut(s) 153, 553, 598, 1641, 1926, 2098, 2280
TaaI ACNGT 8 cut(s) 676, 705, 1081, 2233, 2373, 2391, 2758, 3034
TaqI TCGA 5 cut(s) 300, 1011, 1933, 2635, 3048
TaqII GACCGA 1 cut(s) 407
TatI WGTACW 4 cut(s) 849, 1281, 2373, 3192
TauI GCSGC 4 cut(s) 86, 622, 665, 943
TfiI GAWTC 6 cut(s) 720, 1070, 1178, 2380, 2765, 3104
TscAI CASTG 7 cut(s) 363, 1084, 1707, 2554, 2599, 2886, 2949
TseFI GTSAC 2 cut(s) 2391, 2545
TseI GCWGC 8 cut(s) 73, 97, 1418, 2078, 2503, 2530, 3014, 3245
Tsp45I GTSAC 2 cut(s) 2391, 2545
TspGWI ACGGA 4 cut(s) 1685, 2132, 2836, 3275
TspMI CCCGGG 1 cut(s) 1173
TspRI CASTG 7 cut(s) 363, 1084, 1707, 2554, 2599, 2886, 2949
Tth111I GACNNNGTC 2 cut(s) 37, 705
Van91I CCANNNNNTGG 1 cut(s) 2873
VneI GTGCAC 1 cut(s) 1062
VpaK11BI GGWCC 8 cut(s) 503, 968, 1169, 1270, 1287, 2428, 3158, 3167
XbaI TCTAGA 2 cut(s) 1850, 2009
XcmI CCANNNNNNNNNTGG 1 cut(s) 2190
XmaI CCCGGG 1 cut(s) 1173
XmnI GAANNNNTTC 2 cut(s) 1341, 2769
XspI CTAG 6 cut(s) 737, 746, 962, 1851, 2010, 3087
ZraI GACGTC 2 cut(s) 166, 630
ZrmI AGTACT 3 cut(s) 1283, 2375, 3194
Zsp2I ATGCAT 1 cut(s) 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.