Rh4CG177900

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011719
Physical Location & Seq
Forward (+)
38686395 .. 38688324
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG177900.1

Sequence Viewer

Length: 591 bp
ATGGCGGGTGTGAGGAGGATGAAGCTCGGGTCACAAGGCCTGGAGGTCTCAGCTCAAGGACTGGGCTGCATGGGCATGTCAGCCTTCTATGGCCCCCCGAAGCCCGAAGCCGACATGATCAAGCTCATCCACCATGCCGTCGACTCCGGCGTCACCTTCCTCGACACCTCCGACATGTACGGTCCCCACACCAACGAAATGCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAATTGGCCACCAAATTCGGTGCCAGGTTTGCGGACAACAAAATGGAGATTCGAGGCGAGCCGGCATATGTGAGAGCTTCTTGTGAAGGAAGCTTGAAACGACTTGGTGTAGATTCTATTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAGTTGAAGAGGGTAAAATAAAGTATATTGGTTTGTCTGAGGCATCAGCTTCAGCAATAAGAAGAGCCCATTCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTAGAGGAAGAAATAATCCCTACTTGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

196

Amino Acids

21.55

Weight (kDa)

6.6

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 196 1.6e-45 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 5, 275
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 245, 340, 407, 440
AjnI CCWGG 2 cut(s) 39, 266
AluBI AGCT 9 cut(s) 25, 53, 124, 320, 336, 424, 433, 482, 532
AluI AGCT 9 cut(s) 25, 53, 124, 320, 336, 424, 433, 482, 532
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 2 cut(s) 52, 228
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 37, 91, 249
ApeKI GCWGC 2 cut(s) 66, 529
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 92, 182, 540
AsuHPI GGTGA 2 cut(s) 145, 241
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 426, 502
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 53, 541
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 41, 268
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 52, 228
BfaI CTAG 1 cut(s) 434
BisI GCNGC 2 cut(s) 67, 530
BlsI GCNGC 2 cut(s) 68, 531
Bme1390I CCNGG 2 cut(s) 41, 268
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 92, 182, 540
BmiI GGNNCC 3 cut(s) 94, 184, 265
BmrFI CCNGG 2 cut(s) 41, 268
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 485
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 2 cut(s) 62, 554
BpuEI CTTGAG 2 cut(s) 39, 410
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 2 cut(s) 41, 268
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 3 cut(s) 24, 126, 511
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 63, 462
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 28, 194
BseXI GCAGC 2 cut(s) 53, 541
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 3 cut(s) 39, 93, 251
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 147, 305
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 52, 228
BsmFI GGGAC 2 cut(s) 168, 383
BsnI GGCC 3 cut(s) 39, 93, 251
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 426, 502
Bsp143I GATC 2 cut(s) 117, 364
BspACI CCGC 2 cut(s) 5, 275
BspANI GGCC 3 cut(s) 39, 93, 251
BspCNI CTCAG 2 cut(s) 62, 463
BspLI GGNNCC 3 cut(s) 94, 184, 265
BspQI GCTCTTC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 117, 364
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 41, 268
Bst4CI ACNGT 2 cut(s) 182, 415
Bst6I CTCTTC 2 cut(s) 435, 490
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 302, 306
BstDEI CTNAG 2 cut(s) 49, 471
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 24, 126, 511
BstKTI GATC 2 cut(s) 120, 367
BstMAI GTCTC 2 cut(s) 52, 228
BstMBI GATC 2 cut(s) 117, 364
BstMWI GCNNNNNNNGC 3 cut(s) 72, 272, 430
BstNI CCWGG 2 cut(s) 41, 268
BstNSI RCATGY 2 cut(s) 79, 178
BstSCI CCNGG 2 cut(s) 39, 266
BstV1I GCAGC 2 cut(s) 53, 541
BsuRI GGCC 3 cut(s) 39, 93, 251
BtsCI GGATG 3 cut(s) 24, 126, 511
Cac8I GCNNGC 2 cut(s) 302, 306
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 92, 182, 540
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 178
CviAII CATG 5 cut(s) 70, 76, 115, 134, 175
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 49, 471
DpnI GATC 2 cut(s) 119, 366
DpnII GATC 2 cut(s) 117, 364
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 435, 490
EarI CTCTTC 2 cut(s) 435, 490
Ecl136II GAGCTC 1 cut(s) 424
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 426, 502
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 182, 540
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 39, 266
EcoT38I GRGCYC 2 cut(s) 426, 502
FaeI CATG 5 cut(s) 73, 79, 118, 137, 178
FaqI GGGAC 2 cut(s) 168, 383
FatI CATG 5 cut(s) 69, 75, 114, 133, 174
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 67, 530
FokI GGATG 3 cut(s) 31, 113, 498
FriOI GRGCYC 2 cut(s) 426, 502
Fsp4HI GCNGC 2 cut(s) 67, 530
FspBI CTAG 1 cut(s) 434
GluI GCNGC 2 cut(s) 67, 530
GsuI CTGGAG 2 cut(s) 62, 554
HaeIII GGCC 3 cut(s) 39, 93, 251
HapII CCGG 2 cut(s) 147, 305
HgaI GACGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 5 cut(s) 73, 79, 118, 137, 178
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 143, 292, 356
HpaII CCGG 2 cut(s) 147, 305
HphI GGTGA 2 cut(s) 145, 241
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 172, 472
Hpy188III TCNNGA 2 cut(s) 427, 552
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 94, 166, 323
HpyCH4III ACNGT 2 cut(s) 182, 415
HpyCH4V TGCA 2 cut(s) 69, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 272, 430
HpyF3I CTNAG 2 cut(s) 49, 471
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 5 cut(s) 73, 79, 118, 137, 178
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 364
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 207, 421
LpnPI CCDG 8 cut(s) 26, 47, 53, 160, 253, 280, 318, 518
Lsp1109I GCAGC 2 cut(s) 53, 541
LweI GCATC 1 cut(s) 485
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 3 cut(s) 30, 151, 409
MalI GATC 2 cut(s) 119, 366
MboI GATC 2 cut(s) 117, 364
MboII GAAGA 3 cut(s) 452, 507, 578
MhlI GDGCHC 2 cut(s) 426, 502
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 245, 257
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 2 cut(s) 147, 305
MspR9I CCNGG 2 cut(s) 41, 268
MvaI CCWGG 2 cut(s) 41, 268
MwoI GCNNNNNNNGC 3 cut(s) 72, 272, 430
NaeI GCCGGC 1 cut(s) 306
NdeI CATATG 1 cut(s) 310
NdeII GATC 2 cut(s) 117, 364
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 5 cut(s) 73, 79, 118, 137, 178
NlaIV GGNNCC 3 cut(s) 94, 184, 265
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 30, 151, 409
NspI RCATGY 2 cut(s) 79, 178
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 168
PdiI GCCGGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 292, 356
PkrI GCNGC 2 cut(s) 68, 531
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 39, 266
PspGI CCWGG 2 cut(s) 39, 266
PspN4I GGNNCC 3 cut(s) 94, 184, 265
PspPI GGNCC 3 cut(s) 92, 182, 540
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 426
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 490
SatI GCNGC 2 cut(s) 67, 530
Sau3AI GATC 2 cut(s) 117, 364
Sau96I GGNCC 3 cut(s) 92, 182, 540
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 41, 268
SduI GDGCHC 2 cut(s) 426, 502
SfaNI GCATC 1 cut(s) 485
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 54, 425
SmoI CTYRAG 2 cut(s) 54, 425
Sse9I AATT 2 cut(s) 245, 257
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 5, 275
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 39, 266
TaaI ACNGT 2 cut(s) 182, 415
TaqI TCGA 3 cut(s) 141, 162, 295
TasI AATT 2 cut(s) 245, 257
TfiI GAWTC 2 cut(s) 292, 356
TseFI GTSAC 3 cut(s) 30, 151, 409
TseI GCWGC 2 cut(s) 66, 529
Tsp45I GTSAC 3 cut(s) 30, 151, 409
TspDTI ATGAA 2 cut(s) 35, 500
VpaK11BI GGWCC 2 cut(s) 182, 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 257
XceI RCATGY 2 cut(s) 79, 178
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.