AT1G60680

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000435
Physical Location & Seq
Reverse (-)
22347622 .. 22349317
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60680.2

Sequence Viewer

Length: 1041 bp
ATGGCTGAAGCTTGCAGAGTTAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATCTGCGCAAGGCCTTGGCTGCATGGCCCTCTCCGCTCGATACGGTGCTCCCAAGCCGGAAACTGACGCCATCGCTCTCCTCCACCATGCTATTAACTCCGGTGTTACTTTCTTTGACACCTCTGACATGTATGGTCCTGAAACCAACGAGTTGCTCCTCGGAAAGGCTCTGAAAGATGGGGTGAAGGAGAAAGTGGAGCTTGCGACCAAATTTGGATTCTTTATAGTAGAGGGGGAAATTTCTGAGGTAAGAGGAGATCCTGAGTATGTAAGGGCAGCGTGTGAGGCTAGTTTAAAGAGGCTAGATATTGCCTGCATTGATCTTTATTATCAGCATCGAATCGATACTCGTGTCCCTATCGAAATCACTATGAGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACTGCGGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCTATCTGCAGGGAACTTGGGATTGGAATCGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTTAGCAGCAGGACCCAAACTTGCTGAGAATCTGGAAAACGATGACTTCAGAAAGACTCTACCAAGATTCCAACAAGAAAACGTAGACCACAACAAGATTCTCTTTGAGAAAGTTTCTGCAATGGCTGAGAAGAAAGGGTGCACTCCAGCACAACTAGCCTTAGCATGGGTTCATCACCAGGGAGATGATGTTTGCCCCATTCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACATTAGAGCTTTGTCAGTAAAACTCACTCCTGAAGAAATATCTGAGCTCGACTCCCTTGCCAAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCTCAATGTCCACCTTCAAGAACTCCAACACTCCACCGTTGTCTTCCTGGAAAGCCACTTAA

Protein Analysis

346

Amino Acids

38.27

Weight (kDa)

5.98

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 229 2.4e-54 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 732
AccII CGCG 1 cut(s) 572
AciI CCGC 3 cut(s) 90, 536, 572
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 266, 294
AcuI CTGAAG 5 cut(s) 27, 458, 474, 679, 936
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 3 cut(s) 220, 813, 851
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 4 cut(s) 452, 498, 869, 997
AjnI CCWGG 3 cut(s) 825, 850, 1025
AjuI GAANNNNNNNTTGG 4 cut(s) 257, 289, 594, 626
AluBI AGCT 9 cut(s) 11, 34, 256, 445, 488, 494, 623, 893, 931
AluI AGCT 9 cut(s) 11, 34, 256, 445, 488, 494, 623, 893, 931
Alw21I GWGCWC 4 cut(s) 106, 514, 791, 933
Alw26I GTCTC 1 cut(s) 561
Alw44I GTGCAC 1 cut(s) 787
AlwI GGATC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 4 cut(s) 46, 67, 81, 978
ApaLI GTGCAC 1 cut(s) 787
ApeKI GCWGC 3 cut(s) 75, 332, 653
ApoI RAATTY 2 cut(s) 266, 294
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 4 cut(s) 82, 191, 552, 659
AsuHPI GGTGA 3 cut(s) 250, 515, 815
AvaII GGWCC 3 cut(s) 191, 552, 659
BaeGI GKGCMC 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BanII GRGCYC 1 cut(s) 933
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 1014
Bbv12I GWGCWC 4 cut(s) 106, 514, 791, 933
BbvI GCAGC 3 cut(s) 62, 344, 665
BccI CCATC 2 cut(s) 134, 227
BcgI CGANNNNNNTGC 2 cut(s) 923, 957
BciT130I CCWGG 3 cut(s) 827, 852, 1027
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 6 cut(s) 35, 345, 359, 446, 635, 803
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 3 cut(s) 76, 333, 654
BlsI GCNGC 3 cut(s) 77, 334, 655
Bme1390I CCNGG 3 cut(s) 827, 852, 1027
Bme18I GGWCC 3 cut(s) 191, 552, 659
BmgT120I GGNCC 4 cut(s) 82, 191, 552, 659
BmiI GGNNCC 2 cut(s) 661, 856
BmrFI CCNGG 3 cut(s) 827, 852, 1027
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 1014
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 43, 70, 214, 826
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 813, 851
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 1 cut(s) 614
BseBI CCWGG 3 cut(s) 827, 852, 1027
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 4 cut(s) 43, 70, 214, 826
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 614
BseLI CCNNNNNNNGG 3 cut(s) 220, 813, 851
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 5 cut(s) 291, 309, 663, 765, 918
BseRI GAGGAG 3 cut(s) 125, 203, 324
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 3 cut(s) 62, 344, 665
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 4 cut(s) 48, 69, 83, 980
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 4 cut(s) 106, 514, 791, 933
BsiSI CCGG 2 cut(s) 113, 156
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 220, 813, 851
BsmAI GTCTC 1 cut(s) 561
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 4 cut(s) 48, 69, 83, 980
Bsp1286I GDGCHC 4 cut(s) 106, 514, 791, 933
Bsp143I GATC 2 cut(s) 313, 376
BspACI CCGC 3 cut(s) 90, 536, 572
BspANI GGCC 4 cut(s) 48, 69, 83, 980
BspCNI CTCAG 5 cut(s) 292, 310, 664, 766, 919
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 661, 856
BspMAI CTGCAG 1 cut(s) 599
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 774
BssECI CCNNGG 4 cut(s) 43, 70, 214, 826
BssMI GATC 2 cut(s) 313, 376
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 2 cut(s) 43, 70
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 3 cut(s) 827, 852, 1027
Bst4CI ACNGT 2 cut(s) 101, 1017
Bst6I CTCTTC 3 cut(s) 447, 502, 634
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 13, 258, 370
BstDEI CTNAG 8 cut(s) 300, 318, 649, 672, 774, 808, 861, 927
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 316, 379
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 2 cut(s) 313, 376
BstMWI GCNNNNNNNGC 4 cut(s) 75, 89, 341, 803
BstNI CCWGG 3 cut(s) 827, 852, 1027
BstNSI RCATGY 2 cut(s) 187, 518
BstSCI CCNGG 3 cut(s) 825, 850, 1025
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 791
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 62, 344, 665
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 4 cut(s) 48, 69, 83, 980
BsuTUI ATCGAT 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 13, 258, 370
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 4 cut(s) 82, 191, 552, 659
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 2 cut(s) 131, 578
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 6 cut(s) 79, 143, 184, 515, 813, 976
DdeI CTNAG 8 cut(s) 300, 318, 649, 672, 774, 808, 861, 927
DpnI GATC 2 cut(s) 315, 378
DpnII GATC 2 cut(s) 313, 376
DraI TTTAAA 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 447, 502, 634
EarI CTCTTC 3 cut(s) 447, 502, 634
Ecl136II GAGCTC 1 cut(s) 931
Eco130I CCWWGG 2 cut(s) 43, 70
Eco147I AGGCCT 2 cut(s) 48, 69
Eco24I GRGCYC 1 cut(s) 933
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 191, 552, 659
Eco53kI GAGCTC 1 cut(s) 931
Eco57I CTGAAG 5 cut(s) 27, 458, 474, 679, 936
EcoICRI GAGCTC 1 cut(s) 931
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 3 cut(s) 825, 850, 1025
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 43, 70
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 2 cut(s) 43, 70
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 6 cut(s) 82, 146, 187, 518, 816, 979
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 734, 766
FaqI GGGAC 1 cut(s) 395
FatI CATG 6 cut(s) 78, 142, 183, 514, 812, 975
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 3 cut(s) 76, 333, 654
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 3 cut(s) 76, 333, 654
FspBI CTAG 6 cut(s) 35, 345, 359, 446, 635, 803
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 76, 333, 654
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 4 cut(s) 48, 69, 83, 980
HapII CCGG 2 cut(s) 113, 156
HgaI GACGC 2 cut(s) 131, 578
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 6 cut(s) 82, 146, 187, 518, 816, 979
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 2 cut(s) 9, 486
HinfI GANTC 9 cut(s) 273, 396, 615, 676, 703, 714, 745, 935, 953
HpaII CCGG 2 cut(s) 113, 156
HphI GGTGA 3 cut(s) 250, 515, 815
Hpy166II GTNNAC 4 cut(s) 523, 733, 789, 990
Hpy188I TCNGA 8 cut(s) 181, 218, 228, 301, 484, 506, 698, 928
Hpy188III TCNNGA 6 cut(s) 194, 317, 564, 680, 914, 997
Hpy8I GTNNAC 4 cut(s) 523, 733, 789, 990
HpyAV CCTTC 2 cut(s) 235, 1003
HpyCH4III ACNGT 2 cut(s) 101, 1017
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 7 cut(s) 15, 78, 372, 541, 597, 767, 789
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 89, 341, 803
HpyF3I CTNAG 8 cut(s) 300, 318, 649, 672, 774, 808, 861, 927
HpySE526I ACGT 1 cut(s) 729
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 6 cut(s) 82, 146, 187, 518, 816, 979
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 313, 376
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 109, 216, 253
Lsp1109I GCAGC 3 cut(s) 62, 344, 665
LweI GCATC 1 cut(s) 400
MaeI CTAG 6 cut(s) 35, 345, 359, 446, 635, 803
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 315, 378
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 313, 376
MboII GAAGA 9 cut(s) 451, 464, 519, 587, 590, 651, 790, 929, 1014
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 4 cut(s) 106, 514, 791, 933
MluCI AATT 2 cut(s) 266, 294
MlyI GAGTC 3 cut(s) 697, 929, 962
MmeI TCCRAC 2 cut(s) 742, 1029
MseI TTAA 3 cut(s) 150, 350, 1039
MspI CCGG 2 cut(s) 113, 156
MspR9I CCNGG 3 cut(s) 827, 852, 1027
MvaI CCWGG 3 cut(s) 827, 852, 1027
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 4 cut(s) 75, 89, 341, 803
NdeII GATC 2 cut(s) 313, 376
NlaIII CATG 6 cut(s) 82, 146, 187, 518, 816, 979
NlaIV GGNNCC 2 cut(s) 661, 856
NsbI TGCGCA 1 cut(s) 63
NspI RCATGY 2 cut(s) 187, 518
PceI AGGCCT 2 cut(s) 48, 69
PciI ACATGT 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 502
PfeI GAWTC 6 cut(s) 273, 396, 615, 676, 714, 745
PfoI TCCNGGA 2 cut(s) 850, 1025
PkrI GCNGC 3 cut(s) 77, 334, 655
PleI GAGTC 3 cut(s) 697, 929, 961
PpsI GAGTC 3 cut(s) 697, 929, 961
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 3 cut(s) 825, 850, 1025
PspGI CCWGG 3 cut(s) 825, 850, 1025
PspN4I GGNNCC 2 cut(s) 661, 856
PspPI GGNCC 4 cut(s) 82, 191, 552, 659
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 313
SacI GAGCTC 1 cut(s) 933
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 150, 350, 1039
SatI GCNGC 3 cut(s) 76, 333, 654
Sau3AI GATC 2 cut(s) 313, 376
Sau96I GGNCC 4 cut(s) 82, 191, 552, 659
SchI GAGTC 3 cut(s) 697, 929, 962
ScrFI CCNGG 3 cut(s) 827, 852, 1027
SduI GDGCHC 4 cut(s) 106, 514, 791, 933
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 595
SinI GGWCC 3 cut(s) 191, 552, 659
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 266, 294
SseBI AGGCCT 2 cut(s) 48, 69
SsiI CCGC 3 cut(s) 90, 536, 572
SspMI CTAG 6 cut(s) 35, 345, 359, 446, 635, 803
SstI GAGCTC 1 cut(s) 933
StuI AGGCCT 2 cut(s) 48, 69
StyD4I CCNGG 3 cut(s) 825, 850, 1025
StyI CCWWGG 2 cut(s) 43, 70
TaaI ACNGT 2 cut(s) 101, 1017
TaiI ACGT 1 cut(s) 732
TaqI TCGA 6 cut(s) 94, 394, 399, 417, 563, 933
TasI AATT 2 cut(s) 266, 294
TfiI GAWTC 6 cut(s) 273, 396, 615, 676, 714, 745
Tru1I TTAA 3 cut(s) 150, 350, 1039
Tru9I TTAA 3 cut(s) 150, 350, 1039
TseI GCWGC 3 cut(s) 75, 332, 653
TspDTI ATGAA 2 cut(s) 44, 809
VneI GTGCAC 1 cut(s) 787
VpaK11BI GGWCC 3 cut(s) 191, 552, 659
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 2 cut(s) 266, 294
XceI RCATGY 2 cut(s) 187, 518
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 6 cut(s) 35, 345, 359, 446, 635, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.