Prupe.1G175700_v2.0.a1

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000435
Physical Location & Seq
Reverse (-)
14825373 .. 14828490
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G175700.1

Sequence Viewer

Length: 1005 bp
ATGGCAGGAGGAGTGAGGAGGATCAAGTTGGGTTCACAAGGCCTTGAGGTCTCTGCTCAAGGCCTGGGATGTATGGGCATGTCTGCCTTCTATGGCGCTCCGAAGCCCGACGCAGACATGATCAGTCTCATCCACCATGCCATTGACTCCGGAGTCACCTTCCTCGATACCTCTGACATCTACGGCCCCTTCACCAACGAAATTCTTCTTGGCAAGGTTGAGTTGGCCACCAAGTTTGGTATCAGCTTTGCTGATAACAAGCCGGAGGTTCGAGGTGATCCTGCATATGTGAGAGCTGCTATTGAGGGTAGCTTGAAGCGCCTTGGTGTTGATTCTGTTGATCTCTATTATCAGCATCGGATTGATACCCGTGTACCCATTGAAGTCACGGTTGGGGAACTGAAGAAACTAGTTGAAGAAGGTAAGGTAAAGTACATTGGACTATCCGAGGCCTCTGCTTCCACAATAAGAAGAGCACACGCTGTTCGTCCAATAACAGCTGTGCAGTTGGAGTGGTCGTTGTGGACAAGAGATGTGGAGGAAGATATAATTCCTACTTGCCGGGAACTTGGCATCGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTTTCATCAGGAGCTAAGTTCTTTGAAAATCTTCCCAATGATGATTTCCGAAAGTATCTACCCAGGTTCCAAGCTGAAAACCTAGAGCATAACAAAACAATATTCGAGCAGGTTAGTGATCTTGCAGCAAGGAAGGGGTGCACCCCATCTCAGCTAGCACTGGCCTGGGTTCATCATCAAGGCAACGATGTGTGTCCGATACCCGGAACCACTAAGATTGAGAATTTTAACCAGAACATTGGTGCTCTCTCTGTGAAACTGACACCAGAAGAACTGGCTGAGCTTGAATCTTTTGCTTCTGCTGATGCCGTTAAAGGTGGCAGATATCAGAATGACTTTAGTACTTGGAAGAACTCTGAAACTCCTCCAGTGTCTTCATGGAAAGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

335

Amino Acids

36.62

Weight (kDa)

5.73

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 712
AccIII TCCGGA 1 cut(s) 149
AclWI GGATC 2 cut(s) 29, 272
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 2 cut(s) 201, 835
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 3 cut(s) 375, 434, 955
AfiI CCNNNNNNNGG 1 cut(s) 815
AgsI TTSAA 5 cut(s) 316, 383, 416, 638, 899
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 3 cut(s) 63, 674, 776
AjuI GAANNNNNNNTTGG 6 cut(s) 192, 224, 375, 407, 641, 673
AluBI AGCT 8 cut(s) 246, 296, 312, 500, 626, 686, 766, 895
AluI AGCT 8 cut(s) 246, 296, 312, 500, 626, 686, 766, 895
Alw21I GWGCWC 3 cut(s) 478, 755, 859
Alw26I GTCTC 2 cut(s) 55, 131
Alw44I GTGCAC 1 cut(s) 751
AlwI GGATC 2 cut(s) 29, 272
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 6 cut(s) 40, 61, 184, 225, 450, 774
ApaLI GTGCAC 1 cut(s) 751
ApeKI GCWGC 2 cut(s) 296, 737
ApoI RAATTY 2 cut(s) 201, 835
Asp700I GAANNNNTTC 2 cut(s) 204, 642
AspLEI GCGC 2 cut(s) 98, 321
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 2 cut(s) 563, 816
AsuHPI GGTGA 3 cut(s) 148, 184, 287
AsuNHI GCTAGC 1 cut(s) 766
BaeGI GKGCMC 1 cut(s) 755
BaeI ACNNNNGTAYC 4 cut(s) 357, 357, 390, 390
BalI TGGCCA 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 978
Bbv12I GWGCWC 3 cut(s) 478, 755, 859
BbvI GCAGC 2 cut(s) 283, 749
BccI CCATC 1 cut(s) 766
BceAI ACGGC 2 cut(s) 199, 905
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 3 cut(s) 65, 676, 778
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 563, 816
BcoDI GTCTC 2 cut(s) 55, 131
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 4 cut(s) 410, 599, 695, 767
BfoI RGCGCY 2 cut(s) 99, 322
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 2 cut(s) 297, 738
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 2 cut(s) 298, 739
BmcAI AGTACT 1 cut(s) 955
Bme1390I CCNGG 5 cut(s) 65, 563, 676, 778, 816
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 187, 680, 820
BmrFI CCNGG 5 cut(s) 65, 563, 676, 778, 816
BmsI GCATC 3 cut(s) 364, 582, 907
BmtI GCTAGC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 978
BpmI CTGGAG 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 891
BpuEI CTTGAG 2 cut(s) 42, 65
BpuMI CCSGG 2 cut(s) 563, 816
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 5 cut(s) 64, 322, 447, 674, 777
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 815
Bse1I ACTGG 3 cut(s) 777, 891, 980
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 3 cut(s) 65, 676, 778
BseDI CCNNGG 5 cut(s) 64, 322, 447, 674, 777
BseGI GGATG 2 cut(s) 74, 129
BseLI CCNNNNNNNGG 1 cut(s) 815
BseMII CTCAG 2 cut(s) 776, 882
BseNI ACTGG 3 cut(s) 777, 891, 980
BseRI GAGGAG 3 cut(s) 24, 31, 966
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 2 cut(s) 283, 749
BsgI GTGCAG 1 cut(s) 524
BshFI GGCC 6 cut(s) 42, 63, 186, 227, 452, 776
BsiHKAI GWGCWC 3 cut(s) 478, 755, 859
BsiSI CCGG 4 cut(s) 150, 263, 562, 816
BslI CCNNNNNNNGG 1 cut(s) 815
BsmAI GTCTC 2 cut(s) 55, 131
BsnI GGCC 6 cut(s) 42, 63, 186, 227, 452, 776
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 3 cut(s) 478, 755, 859
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 5 cut(s) 21, 120, 277, 340, 730
Bsp1720I GCTNAGC 1 cut(s) 891
BspANI GGCC 6 cut(s) 42, 63, 186, 227, 452, 776
BspCNI CTCAG 2 cut(s) 775, 883
BspEI TCCGGA 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 187, 680, 820
BspMI ACCTGC 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 2 cut(s) 29, 272
BspQI GCTCTTC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 3 cut(s) 777, 891, 980
BssECI CCNNGG 5 cut(s) 64, 322, 447, 674, 777
BssMI GATC 5 cut(s) 21, 120, 277, 340, 730
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 3 cut(s) 65, 676, 778
Bst4CI ACNGT 2 cut(s) 391, 593
Bst6I CTCTTC 2 cut(s) 466, 598
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 4 cut(s) 627, 762, 825, 891
BstF5I GGATG 2 cut(s) 74, 129
BstH2I RGCGCY 2 cut(s) 99, 322
BstHHI GCGC 2 cut(s) 98, 321
BstKTI GATC 5 cut(s) 24, 123, 280, 343, 733
BstMAI GTCTC 2 cut(s) 55, 131
BstMBI GATC 5 cut(s) 21, 120, 277, 340, 730
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 3 cut(s) 65, 676, 778
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 5 cut(s) 63, 561, 674, 776, 814
BstSLI GKGCMC 1 cut(s) 755
BstV1I GCAGC 2 cut(s) 283, 749
BstV2I GAAGAC 1 cut(s) 978
BstXI CCANNNNNNTGG 1 cut(s) 851
BsuRI GGCC 6 cut(s) 42, 63, 186, 227, 452, 776
BtsCI GGATG 2 cut(s) 74, 129
BtsIMutI CAGTG 2 cut(s) 770, 987
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 1 cut(s) 768
CfoI GCGC 2 cut(s) 98, 321
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 374, 433, 954
CspCI CAANNNNNGTGG 6 cut(s) 217, 252, 516, 551, 811, 846
CviAII CATG 5 cut(s) 79, 118, 137, 990, 1002
CviQI GTAC 3 cut(s) 374, 433, 954
DdeI CTNAG 4 cut(s) 627, 762, 825, 891
DpnI GATC 5 cut(s) 23, 122, 279, 342, 732
DpnII GATC 5 cut(s) 21, 120, 277, 340, 730
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 466, 598
EarI CTCTTC 2 cut(s) 466, 598
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 3 cut(s) 42, 63, 452
Eco31I GGTCTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 63, 674, 776
EcoRV GATATC 1 cut(s) 938
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 5 cut(s) 82, 121, 140, 993, 1005
FatI CATG 5 cut(s) 78, 117, 136, 989, 1001
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 297, 738
FokI GGATG 2 cut(s) 81, 116
Fsp4HI GCNGC 2 cut(s) 297, 738
FspBI CTAG 4 cut(s) 410, 599, 695, 767
GlaI GCGC 2 cut(s) 97, 320
GluI GCNGC 2 cut(s) 297, 738
GsuI CTGGAG 1 cut(s) 963
HaeII RGCGCY 2 cut(s) 99, 322
HaeIII GGCC 6 cut(s) 42, 63, 186, 227, 452, 776
HapII CCGG 4 cut(s) 150, 263, 562, 816
HgaI GACGC 1 cut(s) 119
HhaI GCGC 2 cut(s) 98, 321
Hin1II CATG 5 cut(s) 82, 121, 140, 993, 1005
Hin6I GCGC 2 cut(s) 96, 319
HinP1I GCGC 2 cut(s) 96, 319
HinfI GANTC 5 cut(s) 146, 153, 332, 609, 899
HpaII CCGG 4 cut(s) 150, 263, 562, 816
HphI GGTGA 3 cut(s) 148, 184, 287
Hpy166II GTNNAC 4 cut(s) 35, 374, 525, 753
Hpy188I TCNGA 8 cut(s) 102, 175, 360, 448, 662, 810, 942, 970
Hpy188III TCNNGA 2 cut(s) 150, 621
Hpy8I GTNNAC 4 cut(s) 35, 374, 525, 753
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 97, 169, 199, 413, 739
HpyCH4III ACNGT 2 cut(s) 391, 593
HpyCH4V TGCA 5 cut(s) 284, 505, 587, 737, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 4 cut(s) 627, 762, 825, 891
Hsp92II CATG 5 cut(s) 82, 121, 140, 993, 1005
HspAI GCGC 2 cut(s) 96, 319
Kpn2I TCCGGA 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 5 cut(s) 21, 120, 277, 340, 730
LguI GCTCTTC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 103, 623
Lsp1109I GCAGC 2 cut(s) 283, 749
LweI GCATC 3 cut(s) 364, 582, 907
MaeI CTAG 4 cut(s) 410, 599, 695, 767
MaeIII GTNAC 2 cut(s) 154, 385
MalI GATC 5 cut(s) 23, 122, 279, 342, 732
MboI GATC 5 cut(s) 21, 120, 277, 340, 730
MhlI GDGCHC 3 cut(s) 478, 755, 859
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 201, 549, 835
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 140, 162
MmeI TCCRAC 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 149
MroXI GAANNNNTTC 2 cut(s) 204, 642
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 840, 924
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 150, 263, 562, 816
MspR9I CCNGG 5 cut(s) 65, 563, 676, 778, 816
MvaI CCWGG 3 cut(s) 65, 676, 778
MwoI GCNNNNNNNGC 1 cut(s) 318
NciI CCSGG 2 cut(s) 563, 816
NdeI CATATG 1 cut(s) 286
NdeII GATC 5 cut(s) 21, 120, 277, 340, 730
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 5 cut(s) 82, 121, 140, 993, 1005
NlaIV GGNNCC 3 cut(s) 187, 680, 820
NmuCI GTSAC 2 cut(s) 154, 385
NspI RCATGY 1 cut(s) 82
PceI AGGCCT 3 cut(s) 42, 63, 452
PciSI GCTCTTC 1 cut(s) 466
PdmI GAANNNNTTC 2 cut(s) 204, 642
PfeI GAWTC 3 cut(s) 332, 609, 899
PkrI GCNGC 2 cut(s) 298, 739
PleI GAGTC 2 cut(s) 140, 161
PpsI GAGTC 2 cut(s) 140, 161
Psp6I CCWGG 3 cut(s) 63, 674, 776
PspGI CCWGG 3 cut(s) 63, 674, 776
PspN4I GGNNCC 3 cut(s) 187, 680, 820
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 3 cut(s) 375, 434, 955
RsaNI GTAC 3 cut(s) 374, 433, 954
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 840, 924
SatI GCNGC 2 cut(s) 297, 738
Sau3AI GATC 5 cut(s) 21, 120, 277, 340, 730
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 2 cut(s) 140, 162
ScrFI CCNGG 5 cut(s) 65, 563, 676, 778, 816
SduI GDGCHC 3 cut(s) 478, 755, 859
SfaNI GCATC 3 cut(s) 364, 582, 907
SmlI CTYRAG 2 cut(s) 44, 57
SmoI CTYRAG 2 cut(s) 44, 57
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 3 cut(s) 201, 549, 835
SseBI AGGCCT 3 cut(s) 42, 63, 452
SspI AATATT 1 cut(s) 714
SspMI CTAG 4 cut(s) 410, 599, 695, 767
StuI AGGCCT 3 cut(s) 42, 63, 452
StyD4I CCNGG 5 cut(s) 63, 561, 674, 776, 814
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 391, 593
TaqI TCGA 3 cut(s) 165, 271, 717
TasI AATT 3 cut(s) 201, 549, 835
TatI WGTACW 2 cut(s) 432, 953
TfiI GAWTC 3 cut(s) 332, 609, 899
Tru1I TTAA 2 cut(s) 840, 924
Tru9I TTAA 2 cut(s) 840, 924
TscAI CASTG 2 cut(s) 777, 987
TseFI GTSAC 2 cut(s) 154, 385
TseI GCWGC 2 cut(s) 296, 737
Tsp45I GTSAC 2 cut(s) 154, 385
TspDTI ATGAA 3 cut(s) 606, 773, 978
TspRI CASTG 2 cut(s) 777, 987
VneI GTGCAC 1 cut(s) 751
XapI RAATTY 2 cut(s) 201, 835
XceI RCATGY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 987
XmnI GAANNNNTTC 2 cut(s) 204, 642
XspI CTAG 4 cut(s) 410, 599, 695, 767
ZrmI AGTACT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.