Rmu_sc0001244.1_g000006

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001244.1
OG0000435
Physical Location & Seq
Forward (+)
24994 .. 27405
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001244.1_g000006.1.cds

Sequence Viewer

Length: 708 bp
atgaagggtgtttggttgagttatacacaagtttgtttggtgaaaaggaagcagtttggtggtggtggtggtggaggcgtcagcagtgaggtggtgggtgagctcaagaaactcgttgaagaaggtaagataaagtacattggtctctctgaggcttctgcttccacaataaggagagcccatgctgttcatccaataacagctgtacaactggagtggtccttgtggtcaagagatgcggaggaagaaattattcctacttgtcgtgaacttggcattggtattgttgcatacagtcctctaggaagaggattcctatcatctggggccaagttcgttgaaaatcttgccaacgatgatttccgaaagtatctacccaggttccaagctgaaaacctagagcataatcaaacaatattcgagcgggttagtgatcttgcagtaagaaaggggtgcaccccatctcaactagcactggcttgggttcatcaccaaggaaatgatgtgtgccccatacctggaaccaccaagattgagaattttaaccagaatattggagctttgtctgtgaaactgacaccagaggaattggctgagcttgaatcctttgcttctgcggatactgtaaagggtgaccggtatcagaatgactttagtacttggaagaactccgaaactccaccactgtcttcatggaaggccacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

6.24

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 424
AciI CCGC 3 cut(s) 239, 424, 617
AcsI RAATTY 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 137, 207, 658
AfiI CCNNNNNNNGG 2 cut(s) 171, 518
AgeI ACCGGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 119, 341, 602
AjnI CCWGG 2 cut(s) 377, 517
AjuI GAANNNNNNNTTGG 4 cut(s) 261, 293, 344, 376
AluBI AGCT 5 cut(s) 103, 203, 389, 560, 598
AluI AGCT 5 cut(s) 103, 203, 389, 560, 598
Alw21I GWGCWC 2 cut(s) 105, 458
Alw26I GTCTC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 454
AoxI GGCC 2 cut(s) 327, 699
ApaLI GTGCAC 1 cut(s) 454
ApoI RAATTY 1 cut(s) 538
AsiGI ACCGGT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 219, 327
AsuHPI GGTGA 4 cut(s) 52, 110, 482, 644
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 2 cut(s) 458, 512
BanII GRGCYC 2 cut(s) 105, 181
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 105, 458
BccI CCATC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 379, 519
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 3 cut(s) 302, 398, 470
BfuI GTATCC 1 cut(s) 613
BlpI GCTNAGC 1 cut(s) 594
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 379, 519
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 219, 327
BmiI GGNNCC 3 cut(s) 328, 383, 523
BmrFI CCNGG 2 cut(s) 379, 519
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 377, 493
BsaWI WCCGGW 1 cut(s) 636
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 518
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 2 cut(s) 216, 480
Bse8I GATNNNNATC 1 cut(s) 316
BseBI CCWGG 2 cut(s) 379, 519
BseDI CCNNGG 2 cut(s) 377, 493
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 171, 518
BseMII CTCAG 2 cut(s) 141, 585
BseNI ACTGG 2 cut(s) 216, 480
BseSI GKGCMC 2 cut(s) 458, 512
BshFI GGCC 2 cut(s) 329, 701
BshTI ACCGGT 1 cut(s) 636
BsiHKAI GWGCWC 2 cut(s) 105, 458
BsiSI CCGG 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 171, 518
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 329, 701
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 4 cut(s) 105, 181, 458, 512
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 433
Bsp1720I GCTNAGC 1 cut(s) 594
BspACI CCGC 3 cut(s) 239, 424, 617
BspANI GGCC 2 cut(s) 329, 701
BspCNI CTCAG 2 cut(s) 142, 586
BspLI GGNNCC 3 cut(s) 328, 383, 523
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 2 cut(s) 216, 480
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 377, 493
BssMI GATC 1 cut(s) 433
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 2 cut(s) 379, 519
Bst4CI ACNGT 3 cut(s) 296, 625, 687
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 150, 594
BstEII GGTNACC 1 cut(s) 632
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 433
BstNI CCWGG 2 cut(s) 379, 519
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 377, 517
BstSLI GKGCMC 2 cut(s) 458, 512
BstV2I GAAGAC 1 cut(s) 681
BstXI CCANNNNNNTGG 1 cut(s) 554
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 329, 701
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 91, 473, 683
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 219, 327
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 136, 206, 657
CspAI ACCGGT 1 cut(s) 636
CspCI CAANNNNNGTGG 4 cut(s) 197, 232, 514, 549
CviAII CATG 2 cut(s) 182, 693
CviQI GTAC 3 cut(s) 136, 206, 657
DdeI CTNAG 2 cut(s) 150, 594
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 2 cut(s) 105, 181
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 103
Eco91I GGTNACC 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 377, 517
EcoT14I CCWWGG 1 cut(s) 493
EcoT38I GRGCYC 2 cut(s) 105, 181
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 2 cut(s) 185, 696
FaiI YATR 6 cut(s) 24, 183, 292, 405, 515, 694
FatI CATG 2 cut(s) 181, 692
FauI CCCGC 1 cut(s) 417
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 2 cut(s) 105, 181
FspBI CTAG 3 cut(s) 302, 398, 470
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 329, 701
HapII CCGG 1 cut(s) 637
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 185, 696
HinfI GANTC 2 cut(s) 312, 602
HpaII CCGG 1 cut(s) 637
HphI GGTGA 4 cut(s) 52, 110, 482, 644
Hpy166II GTNNAC 2 cut(s) 269, 456
Hpy188I TCNGA 4 cut(s) 151, 365, 645, 673
Hpy188III TCNNGA 3 cut(s) 106, 231, 266
Hpy8I GTNNAC 2 cut(s) 269, 456
HpyAV CCTTC 2 cut(s) 116, 691
HpyCH4III ACNGT 3 cut(s) 296, 625, 687
HpyCH4V TGCA 3 cut(s) 290, 440, 456
HpyF3I CTNAG 2 cut(s) 150, 594
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 185, 696
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 557
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 302, 398, 470
MaeIII GTNAC 1 cut(s) 632
MalI GATC 1 cut(s) 435
MbiI CCGCTC 1 cut(s) 424
MboI GATC 1 cut(s) 433
MboII GAAGA 5 cut(s) 131, 257, 318, 676, 681
MhlI GDGCHC 4 cut(s) 105, 181, 458, 512
MluCI AATT 3 cut(s) 249, 538, 587
MnlI CCTC 7 cut(s) 68, 82, 145, 235, 302, 309, 577
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 637
MspR9I CCNGG 2 cut(s) 379, 519
MvaI CCWGG 2 cut(s) 379, 519
NdeII GATC 1 cut(s) 433
NlaIII CATG 2 cut(s) 185, 696
NlaIV GGNNCC 3 cut(s) 328, 383, 523
NmuCI GTSAC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 312, 602
PinAI ACCGGT 1 cut(s) 636
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 377, 517
PspEI GGTNACC 1 cut(s) 632
PspGI CCWGG 2 cut(s) 377, 517
PspN4I GGNNCC 3 cut(s) 328, 383, 523
PspPI GGNCC 2 cut(s) 219, 327
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 137, 207, 658
RsaNI GTAC 3 cut(s) 136, 206, 657
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 543
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 2 cut(s) 219, 327
ScaI AGTACT 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 379, 519
SduI GDGCHC 4 cut(s) 105, 181, 458, 512
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 249, 538, 587
SsiI CCGC 3 cut(s) 239, 424, 617
SspI AATATT 2 cut(s) 417, 553
SspMI CTAG 3 cut(s) 302, 398, 470
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 377, 517
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 3 cut(s) 296, 625, 687
TaqI TCGA 1 cut(s) 420
TasI AATT 3 cut(s) 249, 538, 587
TatI WGTACW 3 cut(s) 135, 205, 656
TfiI GAWTC 2 cut(s) 312, 602
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 3 cut(s) 91, 480, 690
TseFI GTSAC 1 cut(s) 632
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 4 cut(s) 17, 179, 476, 681
TspRI CASTG 3 cut(s) 91, 480, 690
VneI GTGCAC 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 3 cut(s) 302, 398, 470
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.