Prupe.1G175800_v2.0.a1

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000435
Physical Location & Seq
Reverse (-)
14842077 .. 14845488
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G175800.1

Sequence Viewer

Length: 1032 bp
ATGGCAGGAGGAGTGAGGAGGATCAAGTTGGGTTCACAGGGCCTTGAGGTCTCGGCTCAAGGCCTGGGCTGTATGGGCATGTCTGCCTTCTATGGCCCTCCCAAGCCCGACGCAGACATGATCAGTCTCATCCACCATGCCATCGACTCCGGCGTCACCTTCCTCGACACCTCTGACATCTACGGTCCCTTCACCAACGAAATTCTGCTTGGCAAGGCTCTGAAGGGTGGGGTACGGGAGAAGGTTGAATTGGCCACCAAGTTTGGTATCAGTTTTGCTGATAACAAGAGGGAGGTTCGAGGTGACCCTGCCTATGTGAGAGCTGCTATTGAGGGTAGTTTGAAGCGCCTTGGTGTTGATTCGGTTGATCTCTATTATCAGCATCGGATTGATACTCGTGTCCCCATTGAAGTCACGGTTGGGGAACTCAAGAAACTAGTTGAAGAAGGTAAGGTAAAGTACATTGGCCTATCCGAGGCCTCTGCTTCCACAATAAGAAGAGCACACGCTGTTCATCCAATAACAGCTGTGCAGTTGGAGTGGTCGTTGTGGTCAAGAGATGTGGAGGAAGATATAATTCCTACTTGCCGGGAACTTGGCATCGGCATTGTTGCGTACAGTCCTCTAGGAAGAGGATTCTTTTCATCAGGAGCTAACTTGGTCGAAAATCTTCCCAACGATGATTTCCGAAAGTATCTACCCAGGTTCCAAGCCGAAAACCTAGAGCATAATAAAACAATATTTGAGCGGGTTAGTGATCTTGCAGCAAGGAAGGGGTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAACGATGTGTGTCCGATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTGGTGCTCTCTCTGTGAAACTGACACCAGAAGAACTGGCTGAACTTGAATCTTTTGCTTCTGCTGATGCCGTTAAAGGTGACAGATATCAGAATGACTTTAGTACTTGGAAGAATTCTGAAACTCCTCCAGTGTCTTCATTGGAAAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

344

Amino Acids

37.55

Weight (kDa)

5.7

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 748
AciI CCGC 1 cut(s) 748
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 3 cut(s) 201, 862, 991
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 4 cut(s) 234, 461, 617, 982
AfiI CCNNNNNNNGG 2 cut(s) 475, 842
AgsI TTSAA 5 cut(s) 248, 343, 410, 443, 926
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 3 cut(s) 63, 701, 803
AjuI GAANNNNNNNTTGG 8 cut(s) 192, 224, 233, 265, 402, 434, 668, 700
AluBI AGCT 3 cut(s) 323, 527, 653
AluI AGCT 3 cut(s) 323, 527, 653
Alw21I GWGCWC 3 cut(s) 505, 782, 886
Alw26I GTCTC 2 cut(s) 55, 131
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 1 cut(s) 29
AoxI GGCC 7 cut(s) 40, 61, 94, 252, 466, 477, 801
ApaLI GTGCAC 1 cut(s) 778
ApeKI GCWGC 2 cut(s) 323, 764
ApoI RAATTY 3 cut(s) 201, 862, 991
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 40, 95, 185
AsuC2I CCSGG 2 cut(s) 590, 843
AsuHPI GGTGA 5 cut(s) 148, 184, 314, 806, 968
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 254
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 3 cut(s) 505, 782, 886
BbvI GCAGC 2 cut(s) 310, 776
BccI CCATC 2 cut(s) 149, 793
BceAI ACGGC 1 cut(s) 932
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 3 cut(s) 65, 703, 805
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 590, 843
BcoDI GTCTC 2 cut(s) 55, 131
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 4 cut(s) 437, 626, 722, 794
BfoI RGCGCY 1 cut(s) 349
BisI GCNGC 2 cut(s) 324, 765
BlsI GCNGC 2 cut(s) 325, 766
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 5 cut(s) 65, 590, 703, 805, 843
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 40, 95, 185
BmiI GGNNCC 3 cut(s) 187, 707, 847
BmrFI CCNGG 5 cut(s) 65, 590, 703, 805, 843
BmsI GCATC 3 cut(s) 391, 609, 934
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 990
BpuEI CTTGAG 3 cut(s) 42, 65, 413
BpuMI CCSGG 2 cut(s) 590, 843
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 6 cut(s) 64, 349, 474, 701, 804, 817
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 842
Bse1I ACTGG 3 cut(s) 804, 918, 1007
BseBI CCWGG 3 cut(s) 65, 703, 805
BseDI CCNNGG 6 cut(s) 64, 349, 474, 701, 804, 817
BseGI GGATG 2 cut(s) 129, 514
BseLI CCNNNNNNNGG 2 cut(s) 475, 842
BseNI ACTGG 3 cut(s) 804, 918, 1007
BseRI GAGGAG 3 cut(s) 24, 31, 993
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 2 cut(s) 310, 776
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 7 cut(s) 42, 63, 96, 254, 468, 479, 803
BsiHKAI GWGCWC 3 cut(s) 505, 782, 886
BsiSI CCGG 3 cut(s) 150, 589, 843
BslFI GGGAC 2 cut(s) 171, 386
BslI CCNNNNNNNGG 2 cut(s) 475, 842
BsmAI GTCTC 2 cut(s) 55, 131
BsmFI GGGAC 2 cut(s) 171, 386
BsnI GGCC 7 cut(s) 42, 63, 96, 254, 468, 479, 803
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 3 cut(s) 505, 782, 886
Bsp143I GATC 4 cut(s) 21, 120, 367, 757
BspACI CCGC 1 cut(s) 748
BspANI GGCC 7 cut(s) 42, 63, 96, 254, 468, 479, 803
BspLI GGNNCC 3 cut(s) 187, 707, 847
BspPI GGATC 1 cut(s) 29
BspQI GCTCTTC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 748
BsrI ACTGG 3 cut(s) 804, 918, 1007
BssECI CCNNGG 6 cut(s) 64, 349, 474, 701, 804, 817
BssMI GATC 4 cut(s) 21, 120, 367, 757
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 349, 817
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 3 cut(s) 65, 703, 805
Bst4CI ACNGT 3 cut(s) 185, 418, 620
Bst6I CTCTTC 2 cut(s) 493, 625
BstACI GRCGYC 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 302
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 2 cut(s) 129, 514
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 4 cut(s) 24, 123, 370, 760
BstMAI GTCTC 2 cut(s) 55, 131
BstMBI GATC 4 cut(s) 21, 120, 367, 757
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 3 cut(s) 65, 703, 805
BstNSI RCATGY 1 cut(s) 82
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 5 cut(s) 63, 588, 701, 803, 841
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 310, 776
BstV2I GAAGAC 1 cut(s) 1005
BstXI CCANNNNNNTGG 1 cut(s) 878
BsuRI GGCC 7 cut(s) 42, 63, 96, 254, 468, 479, 803
BtsCI GGATG 2 cut(s) 129, 514
BtsIMutI CAGTG 2 cut(s) 797, 1014
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 40, 95, 185
CseI GACGC 2 cut(s) 119, 142
Csp6I GTAC 4 cut(s) 233, 460, 616, 981
CspCI CAANNNNNGTGG 6 cut(s) 244, 279, 543, 578, 838, 873
CviAII CATG 4 cut(s) 79, 118, 137, 1029
CviQI GTAC 4 cut(s) 233, 460, 616, 981
DpnI GATC 4 cut(s) 23, 122, 369, 759
DpnII GATC 4 cut(s) 21, 120, 367, 757
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 493, 625
EarI CTCTTC 2 cut(s) 493, 625
Eco130I CCWWGG 2 cut(s) 349, 817
Eco147I AGGCCT 2 cut(s) 63, 479
Eco31I GGTCTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 965
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 991
EcoRII CCWGG 3 cut(s) 63, 701, 803
EcoRV GATATC 1 cut(s) 965
EcoT14I CCWWGG 2 cut(s) 349, 817
ErhI CCWWGG 2 cut(s) 349, 817
FaeI CATG 4 cut(s) 82, 121, 140, 1032
FaiI YATR 9 cut(s) 74, 80, 93, 119, 138, 315, 575, 729, 1030
FaqI GGGAC 2 cut(s) 171, 386
FatI CATG 4 cut(s) 78, 117, 136, 1028
FauI CCCGC 1 cut(s) 741
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 324, 765
FokI GGATG 2 cut(s) 116, 501
Fsp4HI GCNGC 2 cut(s) 324, 765
FspBI CTAG 4 cut(s) 437, 626, 722, 794
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 324, 765
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 7 cut(s) 42, 63, 96, 254, 468, 479, 803
HapII CCGG 3 cut(s) 150, 589, 843
HgaI GACGC 2 cut(s) 119, 142
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 4 cut(s) 82, 121, 140, 1032
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 4 cut(s) 146, 359, 636, 926
HpaII CCGG 3 cut(s) 150, 589, 843
HphI GGTGA 5 cut(s) 148, 184, 314, 806, 968
Hpy166II GTNNAC 2 cut(s) 35, 780
Hpy188I TCNGA 8 cut(s) 175, 222, 387, 475, 689, 837, 969, 997
Hpy188III TCNNGA 3 cut(s) 430, 555, 648
Hpy8I GTNNAC 2 cut(s) 35, 780
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 7 cut(s) 97, 169, 199, 217, 235, 440, 766
HpyCH4III ACNGT 3 cut(s) 185, 418, 620
HpyCH4V TGCA 3 cut(s) 532, 764, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 4 cut(s) 82, 121, 140, 1032
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 4 cut(s) 21, 120, 367, 757
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 2 cut(s) 310, 776
LweI GCATC 3 cut(s) 391, 609, 934
MaeI CTAG 4 cut(s) 437, 626, 722, 794
MaeIII GTNAC 4 cut(s) 154, 302, 412, 956
MalI GATC 4 cut(s) 23, 122, 369, 759
MbiI CCGCTC 1 cut(s) 748
MboI GATC 4 cut(s) 21, 120, 367, 757
MboII GAAGA 8 cut(s) 455, 510, 581, 642, 662, 920, 1000, 1005
MhlI GDGCHC 3 cut(s) 505, 782, 886
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 201, 248, 576, 862, 991
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 516
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 669
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 867, 951
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 150, 589, 843
MspR9I CCNGG 5 cut(s) 65, 590, 703, 805, 843
MvaI CCWGG 3 cut(s) 65, 703, 805
MwoI GCNNNNNNNGC 1 cut(s) 75
NciI CCSGG 2 cut(s) 590, 843
NdeII GATC 4 cut(s) 21, 120, 367, 757
NlaIII CATG 4 cut(s) 82, 121, 140, 1032
NlaIV GGNNCC 3 cut(s) 187, 707, 847
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 4 cut(s) 154, 302, 412, 956
NspI RCATGY 1 cut(s) 82
PceI AGGCCT 2 cut(s) 63, 479
PciSI GCTCTTC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 3 cut(s) 359, 636, 926
PkrI GCNGC 2 cut(s) 325, 766
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 63, 701, 803
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 3 cut(s) 63, 701, 803
PspN4I GGNNCC 3 cut(s) 187, 707, 847
PspPI GGNCC 3 cut(s) 40, 95, 185
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 4 cut(s) 234, 461, 617, 982
RsaNI GTAC 4 cut(s) 233, 460, 616, 981
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 867, 951
SatI GCNGC 2 cut(s) 324, 765
Sau3AI GATC 4 cut(s) 21, 120, 367, 757
Sau96I GGNCC 3 cut(s) 40, 95, 185
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 5 cut(s) 65, 590, 703, 805, 843
SduI GDGCHC 3 cut(s) 505, 782, 886
SfaNI GCATC 3 cut(s) 391, 609, 934
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 44, 57, 428
SmoI CTYRAG 3 cut(s) 44, 57, 428
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 5 cut(s) 201, 248, 576, 862, 991
SseBI AGGCCT 2 cut(s) 63, 479
SsiI CCGC 1 cut(s) 748
SspI AATATT 1 cut(s) 741
SspMI CTAG 4 cut(s) 437, 626, 722, 794
StuI AGGCCT 2 cut(s) 63, 479
StyD4I CCNGG 5 cut(s) 63, 588, 701, 803, 841
StyI CCWWGG 2 cut(s) 349, 817
TaaI ACNGT 3 cut(s) 185, 418, 620
TaqI TCGA 4 cut(s) 144, 165, 298, 663
TasI AATT 5 cut(s) 201, 248, 576, 862, 991
TatI WGTACW 2 cut(s) 459, 980
TfiI GAWTC 3 cut(s) 359, 636, 926
Tru1I TTAA 2 cut(s) 867, 951
Tru9I TTAA 2 cut(s) 867, 951
TscAI CASTG 2 cut(s) 804, 1014
TseFI GTSAC 4 cut(s) 154, 302, 412, 956
TseI GCWGC 2 cut(s) 323, 764
Tsp45I GTSAC 4 cut(s) 154, 302, 412, 956
TspDTI ATGAA 4 cut(s) 503, 633, 800, 1005
TspRI CASTG 2 cut(s) 804, 1014
VneI GTGCAC 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 473
XapI RAATTY 3 cut(s) 201, 862, 991
XceI RCATGY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 4 cut(s) 437, 626, 722, 794
ZrmI AGTACT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.