Rmu_co8497103.1_g000001

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8497103.1
OG0000435
Physical Location & Seq
Forward (+)
1 .. 1707
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8497103.1_g000001.1.cds

Sequence Viewer

Length: 550 bp
agcttcaacaataagaagagcccatgctgttcatccaataactgctgtgcagctggagtggtccttgtggtcaagagatgtggaggaagaaatagttcctacttgtcgggaacttggcattggtattgttgcatacagtcctctagcaagaggatttttttcactgggggccaagttcattgaaagtcttccgaacaatgattcccgaaagaagttgcccaggttccaagctgaaaacctagagcataatgaaacaatattccagcgggttagtgaacttgcagcaaggaagggatgtaccccatctcaacttgccctggcttggattcatcaccaaggaaatgatgtgtgccctatacccggaactaccaagattgagaattttgaccagaacattaaggctctatctgtaaaactgacaccagaagaaatggctgagcttgaatcttttgcttcggcagatgctgttaagggcgacagatatcagactggcatcagtacttggttgaactctgaaactccaccactgtcttcatggaaagccacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

182

Amino Acids

20.24

Weight (kDa)

5.98

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 2 cut(s) 299, 500
AfiI CCNNNNNNNGG 2 cut(s) 322, 360
AgsI TTSAA 4 cut(s) 7, 183, 444, 509
AjnI CCWGG 2 cut(s) 219, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 4 cut(s) 3, 53, 231, 440
AluI AGCT 4 cut(s) 3, 53, 231, 440
AlwNI CAGNNNCTG 1 cut(s) 465
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 50, 282
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 2 cut(s) 94, 187
AspS9I GGNCC 2 cut(s) 61, 169
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 180, 523
BbvI GCAGC 2 cut(s) 62, 294
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 221, 318
BcnI CCSGG 1 cut(s) 361
BfaI CTAG 2 cut(s) 144, 240
BisI GCNGC 2 cut(s) 51, 283
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 2 cut(s) 52, 284
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 3 cut(s) 221, 318, 361
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 169
BmiI GGNNCC 2 cut(s) 170, 225
BmrFI CCNGG 3 cut(s) 221, 318, 361
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 452, 502
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 180, 523
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 219, 316, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 360
Bse1I ACTGG 2 cut(s) 169, 494
BseBI CCWGG 2 cut(s) 221, 318
BseDI CCNNGG 3 cut(s) 219, 316, 335
BseGI GGATG 2 cut(s) 32, 300
BseLI CCNNNNNNNGG 2 cut(s) 322, 360
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 169, 494
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 2 cut(s) 62, 294
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 322, 360
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 23, 354
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 170, 225
BspQI GCTCTTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 169, 494
BssECI CCNNGG 3 cut(s) 219, 316, 335
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 221, 318
Bst4CI ACNGT 2 cut(s) 138, 529
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 32, 300
BstNI CCWGG 2 cut(s) 221, 318
BstSCI CCNGG 3 cut(s) 219, 316, 359
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 62, 294
BstV2I GAAGAC 2 cut(s) 180, 523
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 32, 300
BtsIMutI CAGTG 2 cut(s) 162, 525
CaiI CAGNNNCTG 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 61, 169
Csp6I GTAC 2 cut(s) 298, 499
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 2 cut(s) 24, 535
CviQI GTAC 2 cut(s) 298, 499
DdeI CTNAG 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 219, 316
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 2 cut(s) 27, 538
FaiI YATR 6 cut(s) 25, 134, 247, 357, 536, 548
FatI CATG 2 cut(s) 23, 534
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 51, 283
FokI GGATG 2 cut(s) 19, 307
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 51, 283
FspBI CTAG 2 cut(s) 144, 240
GluI GCNGC 2 cut(s) 51, 283
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 361
Hin1II CATG 2 cut(s) 27, 538
HinfI GANTC 3 cut(s) 201, 326, 444
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 3 cut(s) 193, 487, 515
Hpy188III TCNNGA 3 cut(s) 73, 108, 205
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 138, 529
HpyCH4V TGCA 3 cut(s) 50, 132, 282
HpyF3I CTNAG 1 cut(s) 436
Hsp92II CATG 2 cut(s) 27, 538
LguI GCTCTTC 1 cut(s) 11
Lsp1109I GCAGC 2 cut(s) 62, 294
LweI GCATC 2 cut(s) 452, 502
MaeI CTAG 2 cut(s) 144, 240
MboII GAAGA 5 cut(s) 28, 99, 180, 438, 523
MhlI GDGCHC 2 cut(s) 23, 354
MluCI AATT 1 cut(s) 380
MnlI CCTC 3 cut(s) 77, 144, 151
MroXI GAANNNNTTC 2 cut(s) 94, 187
MseI TTAA 2 cut(s) 397, 469
MspA1I CMGCKG 2 cut(s) 53, 266
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 3 cut(s) 221, 318, 361
MvaI CCWGG 2 cut(s) 221, 318
NciI CCSGG 1 cut(s) 361
NlaIII CATG 2 cut(s) 27, 538
NlaIV GGNNCC 2 cut(s) 170, 225
PciSI GCTCTTC 1 cut(s) 11
PdmI GAANNNNTTC 2 cut(s) 94, 187
PfeI GAWTC 3 cut(s) 201, 326, 444
PkrI GCNGC 2 cut(s) 52, 284
Psp6I CCWGG 2 cut(s) 219, 316
PspGI CCWGG 2 cut(s) 219, 316
PspN4I GGNNCC 2 cut(s) 170, 225
PspPI GGNCC 2 cut(s) 61, 169
PstNI CAGNNNCTG 1 cut(s) 465
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 299, 500
RsaNI GTAC 2 cut(s) 298, 499
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 397, 469
SatI GCNGC 2 cut(s) 51, 283
Sau96I GGNCC 2 cut(s) 61, 169
ScaI AGTACT 1 cut(s) 500
ScrFI CCNGG 3 cut(s) 221, 318, 361
SduI GDGCHC 2 cut(s) 23, 354
SetI ASST 5 cut(s) 55, 225, 233, 241, 442
SfaNI GCATC 2 cut(s) 452, 502
SinI GGWCC 1 cut(s) 61
Sse9I AATT 1 cut(s) 380
SsiI CCGC 1 cut(s) 266
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 144, 240
StyD4I CCNGG 3 cut(s) 219, 316, 359
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 138, 529
TasI AATT 1 cut(s) 380
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 3 cut(s) 201, 326, 444
Tru1I TTAA 2 cut(s) 397, 469
Tru9I TTAA 2 cut(s) 397, 469
TscAI CASTG 2 cut(s) 169, 532
TseI GCWGC 2 cut(s) 50, 282
TspDTI ATGAA 5 cut(s) 21, 167, 265, 318, 523
TspRI CASTG 2 cut(s) 169, 532
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 2 cut(s) 94, 187
XspI CTAG 2 cut(s) 144, 240
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.