Rorug04G0110700

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000435
Physical Location & Seq
Reverse (-)
17406930 .. 17407550
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0110700.1

Sequence Viewer

Length: 336 bp
ATGATGGAGACCTCTTGCACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCAACATCGCCCTTCTCGTCACCGGAACCCTCGGCATTGTTGTCGGCACCCTCATGGCCTATAATCGCGTCGGTGGCGAAAAAGCTCACGGTACCCTAACGCCACCGTTCTACTGCCACAGTGGTGACGCAGCCAAGGAATACTTGCAGAAACAAATTGAGATATTGAGGACAAAGTCTCACTGGAAGAAAGAATATTTTCATTTGTGGGTGAGGAATGTTCTTTGCAATTCTTGGTGGGATCTTGTTCATTCCAAGCTCTATTACACACGGATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

111

Amino Acids

12.74

Weight (kDa)

9.22

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 2 cut(s) 101, 146
AccII CGCG 1 cut(s) 123
AclWI GGATC 1 cut(s) 303
AfaI GTAC 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 2 cut(s) 140, 313
AluI AGCT 2 cut(s) 140, 313
Alw26I GTCTC 2 cut(s) 2, 237
AlwI GGATC 1 cut(s) 303
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 67, 191, 277
BanI GGYRCC 2 cut(s) 101, 146
BbvI GCAGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcoDI GTCTC 2 cut(s) 2, 237
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 82, 103, 148
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 2 cut(s) 85, 189
BsaWI WCCGGW 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 85, 189
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 2 cut(s) 101, 146
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 2, 237
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 2
Bsp143I GATC 2 cut(s) 48, 295
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 82, 103, 148
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 2 cut(s) 101, 146
BspTNI GGTCTC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 85, 189
BssMI GATC 2 cut(s) 48, 295
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 4 cut(s) 22, 146, 162, 176
BstDEI CTNAG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 2 cut(s) 51, 298
BstMAI GTCTC 2 cut(s) 2, 237
BstMBI GATC 2 cut(s) 48, 295
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 181, 235
CseI GACGC 2 cut(s) 112, 191
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 34, 113, 140, 188, 313
CviKI_1 RGCY 5 cut(s) 34, 113, 140, 188, 313
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 50, 297
DpnII GATC 2 cut(s) 48, 295
Eco130I CCWWGG 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 2
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 117
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 78
HgaI GACGC 2 cut(s) 112, 191
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 67, 191, 277
Hpy166II GTNNAC 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 4 cut(s) 22, 146, 162, 176
HpyCH4V TGCA 3 cut(s) 18, 202, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 1 cut(s) 112
KpnI GGTACC 1 cut(s) 150
Kzo9I GATC 2 cut(s) 48, 295
LpnPI CCDG 2 cut(s) 91, 223
Lsp1109I GCAGC 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 73, 179
MalI GATC 2 cut(s) 50, 297
MboI GATC 2 cut(s) 48, 295
MboII GAAGA 1 cut(s) 253
MflI RGATCY 1 cut(s) 295
MluCI AATT 2 cut(s) 210, 283
MnlI CCTC 6 cut(s) 22, 45, 95, 116, 216, 261
MroXI GAANNNNTTC 1 cut(s) 252
MslI CAYNNNNRTG 2 cut(s) 107, 177
MspI CCGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 2 cut(s) 48, 295
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 3 cut(s) 82, 103, 148
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 73, 179
OliI CACNNNNGTG 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 252
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 82, 103, 148
PsuI RGATCY 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 107, 177
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 48, 295
SetI ASST 3 cut(s) 14, 142, 315
SmiMI CAYNNNNRTG 2 cut(s) 107, 177
Sse9I AATT 2 cut(s) 210, 283
SspI AATATT 1 cut(s) 251
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 4 cut(s) 22, 146, 162, 176
TasI AATT 2 cut(s) 210, 283
TscAI CASTG 2 cut(s) 181, 242
TseFI GTSAC 2 cut(s) 73, 179
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 73, 179
TspDTI ATGAA 2 cut(s) 245, 293
TspRI CASTG 2 cut(s) 181, 242
Tth111I GACNNNGTC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.