Rh4CG178000

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000435
Physical Location & Seq
Forward (+)
38690173 .. 38690508
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG178000.1

Sequence Viewer

Length: 336 bp
ATGCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCATCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCTGAACATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCTGAGTTTGAATCTTTTGCTTCCGCAGATGCTGTTAAGGGCGACAGGTATCAGACTAGCGTCAGTACTTGGAGGAACTCTGAGACTCCACCGCTATCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

111

Amino Acids

12.4

Weight (kDa)

6.28

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 9 - 79 3e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 243, 311
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 2 cut(s) 5, 107
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 296
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 7, 109
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 26, 98, 276
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 7, 109, 147
BmiI GGNNCC 2 cut(s) 11, 151
BmrFI CCNGG 3 cut(s) 7, 109, 147
BmsI GCATC 2 cut(s) 93, 238
BoxI GACNNNNGTC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 5, 108, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 7, 109
BseDI CCNNGG 3 cut(s) 5, 108, 121
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 213, 291
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 296
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 243, 311
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 214, 292
BspLI GGNNCC 2 cut(s) 11, 151
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 5, 108, 121
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 7, 109
BstDEI CTNAG 2 cut(s) 222, 300
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 7, 109
BstPAI GACNNNNGTC 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 5, 107, 145
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 251
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 285
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 1 cut(s) 321
CviJI RGCY 5 cut(s) 17, 107, 188, 221, 329
CviKI_1 RGCY 5 cut(s) 17, 107, 188, 221, 329
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 222, 300
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 5, 107
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 324
FaiI YATR 4 cut(s) 33, 143, 322, 334
FatI CATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 3 cut(s) 26, 98, 276
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 324
HinfI GANTC 2 cut(s) 230, 304
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 273, 301
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 68, 84
HpyF3I CTNAG 2 cut(s) 222, 300
Hsp92II CATG 1 cut(s) 324
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 8 cut(s) 19, 89, 94, 121, 160, 188, 222, 250
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 93, 238
MaeI CTAG 3 cut(s) 26, 98, 276
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 224, 309
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 1 cut(s) 285
MseI TTAA 3 cut(s) 171, 183, 255
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 7, 109, 147
MvaI CCWGG 2 cut(s) 7, 109
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 2 cut(s) 11, 151
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 5, 107
PspGI CCWGG 2 cut(s) 5, 107
PspN4I GGNNCC 2 cut(s) 11, 151
PstNI CAGNNNCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 171, 183, 255
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 3 cut(s) 7, 109, 147
SduI GDGCHC 1 cut(s) 140
SetI ASST 5 cut(s) 11, 19, 27, 177, 269
SfaNI GCATC 2 cut(s) 93, 238
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 243, 311
SspI AATATT 1 cut(s) 45
SspMI CTAG 3 cut(s) 26, 98, 276
StyD4I CCNGG 3 cut(s) 5, 107, 145
StyI CCWWGG 1 cut(s) 121
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 171, 183, 255
Tru9I TTAA 3 cut(s) 171, 183, 255
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 104, 309
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 166
XspI CTAG 3 cut(s) 26, 98, 276
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.