Rh4AG157500

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000435
Physical Location & Seq
Forward (+)
40138101 .. 40146719
8619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG157500.1

Sequence Viewer

Length: 1029 bp
ATGGGGGGTGTGAGGAGGATGAAGCTCGGGTCACAAGGCATGGAGGTGTCAGCTCAAGGACTGGGCTGCATGGGCATGTCTGCCTTCTATGGCCCCCCGAAGCCTGAAGCTGACATGATCAAGCTCATCCACCACGCCATTGACTCCGGCGTCACCTTCCTCGACACCTCCGACAACTACGGTCCGCACACCAATGAAATTCTCCTCGGCAAGGTTTTGAGTGGTGGGGTGAGAGACAAGGTTGAATTGGCCACCAAATTCGGTATCAGGTTTGCGGACAACAAAATGGAGATTCGAGGCGACCCAGCATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAGCGGCTCGGTGTAGATTCTATTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATTGGTCTGTCTGAGGCGTCGGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATATAGAGGAAGAAATAATCCCTTCTTGTCGGGAACTTGGCATTGGCATTGTTGCATATAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATTATCGAAAGAATATGCCCAGGTTCCAAGCTGGAAACCTAGAGCTTAATAAAACAATATTTGTGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCTTGGGTTCATCACCAGGGAAATGATGTGTGTCCCATACCCGGAACCACCAAGATTGAGAATTTAAACCAGAATATTGGAGCTCTGTCTGTGAACCTCACACCAGAAGAATTGGCTGAGCTTGAATCCTTTGCTTCTGCGGATTCTGTGAAGGGCGACCGATATCAAAATGGTATCAGTACTTGGATGAACTCTGAAACTCCACCATTGTCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

342

Amino Acids

37.46

Weight (kDa)

6.1

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 310 3.7e-70 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AciI CCGC 4 cut(s) 185, 275, 343, 938
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 4 cut(s) 198, 257, 652, 859
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 2 cut(s) 150, 476
AfaI GTAC 2 cut(s) 458, 979
AfiI CCNNNNNNNGG 2 cut(s) 211, 839
AgsI TTSAA 6 cut(s) 245, 340, 407, 440, 486, 923
AjnI CCWGG 2 cut(s) 698, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
Alw21I GWGCWC 2 cut(s) 426, 883
Alw26I GTCTC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 91, 249
ApeKI GCWGC 4 cut(s) 66, 320, 529, 761
ApoI RAATTY 4 cut(s) 198, 257, 652, 859
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 3 cut(s) 92, 182, 540
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 3 cut(s) 145, 241, 803
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 3 cut(s) 426, 502, 883
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 2 cut(s) 426, 883
BbvI GCAGC 4 cut(s) 53, 307, 541, 773
BccI CCATC 1 cut(s) 790
BciT130I CCWGG 2 cut(s) 700, 815
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 3 cut(s) 623, 719, 791
BisI GCNGC 5 cut(s) 67, 321, 344, 530, 762
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 5 cut(s) 68, 322, 345, 531, 763
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 3 cut(s) 700, 815, 840
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 92, 182, 540
BmiI GGNNCC 3 cut(s) 94, 704, 844
BmrFI CCNGG 3 cut(s) 700, 815, 840
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 39, 410
BpuMI CCSGG 1 cut(s) 840
BsaBI GATNNNNATC 2 cut(s) 637, 681
BsaHI GRCGYC 2 cut(s) 150, 476
BsaJI CCNNGG 3 cut(s) 205, 698, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 839
Bse1I ACTGG 2 cut(s) 66, 801
Bse8I GATNNNNATC 2 cut(s) 637, 681
BseBI CCWGG 2 cut(s) 700, 815
BseDI CCNNGG 3 cut(s) 205, 698, 814
BseGI GGATG 4 cut(s) 24, 126, 511, 990
BseJI GATNNNNATC 2 cut(s) 637, 681
BseLI CCNNNNNNNGG 2 cut(s) 211, 839
BseMII CTCAG 2 cut(s) 462, 906
BseNI ACTGG 2 cut(s) 66, 801
BseRI GAGGAG 2 cut(s) 28, 194
BseXI GCAGC 4 cut(s) 53, 307, 541, 773
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 958
BshFI GGCC 2 cut(s) 93, 251
BsiEI CGRYCG 1 cut(s) 958
BsiHKAI GWGCWC 2 cut(s) 426, 883
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 147, 840
BslFI GGGAC 2 cut(s) 383, 816
BslI CCNNNNNNNGG 2 cut(s) 211, 839
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 2 cut(s) 383, 816
BsnI GGCC 2 cut(s) 93, 251
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 426, 502, 883
Bsp143I GATC 3 cut(s) 117, 364, 754
Bsp1720I GCTNAGC 1 cut(s) 915
BspACI CCGC 4 cut(s) 185, 275, 343, 938
BspANI GGCC 2 cut(s) 93, 251
BspCNI CTCAG 2 cut(s) 463, 907
BspLI GGNNCC 3 cut(s) 94, 704, 844
BspQI GCTCTTC 1 cut(s) 490
BsrI ACTGG 2 cut(s) 66, 801
BssECI CCNNGG 3 cut(s) 205, 698, 814
BssMI GATC 3 cut(s) 117, 364, 754
BssNI GRCGYC 2 cut(s) 150, 476
Bst2UI CCWGG 2 cut(s) 700, 815
Bst4CI ACNGT 2 cut(s) 182, 415
Bst6I CTCTTC 3 cut(s) 435, 490, 622
BstACI GRCGYC 2 cut(s) 150, 476
BstDEI CTNAG 2 cut(s) 471, 915
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 4 cut(s) 24, 126, 511, 990
BstKTI GATC 3 cut(s) 120, 367, 757
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 117, 364, 754
BstMCI CGRYCG 1 cut(s) 958
BstMWI GCNNNNNNNGC 2 cut(s) 72, 430
BstNI CCWGG 2 cut(s) 700, 815
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 3 cut(s) 698, 813, 838
BstV1I GCAGC 4 cut(s) 53, 307, 541, 773
BstV2I GAAGAC 1 cut(s) 1002
BstXI CCANNNNNNTGG 1 cut(s) 875
BsuRI GGCC 2 cut(s) 93, 251
BtsCI GGATG 4 cut(s) 24, 126, 511, 990
BtsIMutI CAGTG 1 cut(s) 794
Cfr13I GGNCC 3 cut(s) 92, 182, 540
CpoI CGGWCCG 1 cut(s) 182
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 2 cut(s) 457, 978
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CspI CGGWCCG 1 cut(s) 182
CviAII CATG 6 cut(s) 40, 70, 76, 115, 503, 1014
CviQI GTAC 2 cut(s) 457, 978
DdeI CTNAG 2 cut(s) 471, 915
DpnI GATC 3 cut(s) 119, 366, 756
DpnII GATC 3 cut(s) 117, 364, 754
DraI TTTAAA 1 cut(s) 864
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 435, 490, 622
EarI CTCTTC 3 cut(s) 435, 490, 622
Ecl136II GAGCTC 2 cut(s) 424, 881
Eco24I GRGCYC 3 cut(s) 426, 502, 883
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 182, 540
Eco53kI GAGCTC 2 cut(s) 424, 881
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 2 cut(s) 424, 881
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 698, 813
EcoRV GATATC 1 cut(s) 962
EcoT38I GRGCYC 3 cut(s) 426, 502, 883
FaeI CATG 6 cut(s) 43, 73, 79, 118, 506, 1017
FaqI GGGAC 2 cut(s) 383, 816
FatI CATG 6 cut(s) 39, 69, 75, 114, 502, 1013
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 67, 321, 344, 530, 762
FokI GGATG 4 cut(s) 31, 113, 498, 997
FriOI GRGCYC 3 cut(s) 426, 502, 883
Fsp4HI GCNGC 5 cut(s) 67, 321, 344, 530, 762
FspBI CTAG 3 cut(s) 623, 719, 791
GluI GCNGC 5 cut(s) 67, 321, 344, 530, 762
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 93, 251
HapII CCGG 2 cut(s) 147, 840
HgaI GACGC 2 cut(s) 139, 465
Hin1I GRCGYC 2 cut(s) 150, 476
Hin1II CATG 6 cut(s) 43, 73, 79, 118, 506, 1017
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 6 cut(s) 143, 292, 356, 633, 923, 941
HpaII CCGG 2 cut(s) 147, 840
HphI GGTGA 3 cut(s) 145, 241, 803
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 3 cut(s) 172, 472, 994
Hpy188III TCNNGA 3 cut(s) 427, 552, 587
Hpy8I GTNNAC 1 cut(s) 892
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 6 cut(s) 94, 166, 323, 588, 763, 943
HpyCH4III ACNGT 2 cut(s) 182, 415
HpyCH4V TGCA 5 cut(s) 69, 529, 611, 761, 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 430
HpyF3I CTNAG 2 cut(s) 471, 915
Hsp92I GRCGYC 2 cut(s) 150, 476
Hsp92II CATG 6 cut(s) 43, 73, 79, 118, 506, 1017
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 364, 754
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 421, 878
Lsp1109I GCAGC 4 cut(s) 53, 307, 541, 773
MaeI CTAG 3 cut(s) 623, 719, 791
MaeIII GTNAC 3 cut(s) 30, 151, 409
MalI GATC 3 cut(s) 119, 366, 756
MboI GATC 3 cut(s) 117, 364, 754
MboII GAAGA 7 cut(s) 452, 507, 578, 639, 659, 917, 1002
MhlI GDGCHC 3 cut(s) 426, 502, 883
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 7 cut(s) 198, 245, 257, 435, 652, 859, 908
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 726, 863
MslI CAYNNNNRTG 3 cut(s) 44, 74, 192
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 2 cut(s) 147, 840
MspR9I CCNGG 3 cut(s) 700, 815, 840
MvaI CCWGG 2 cut(s) 700, 815
MwoI GCNNNNNNNGC 2 cut(s) 72, 430
NciI CCSGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 117, 364, 754
NlaIII CATG 6 cut(s) 43, 73, 79, 118, 506, 1017
NlaIV GGNNCC 3 cut(s) 94, 704, 844
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 30, 151, 409
NspI RCATGY 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 5 cut(s) 292, 356, 633, 923, 941
PkrI GCNGC 5 cut(s) 68, 322, 345, 531, 763
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 2 cut(s) 426, 883
Psp6I CCWGG 2 cut(s) 698, 813
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 2 cut(s) 698, 813
PspN4I GGNNCC 3 cut(s) 94, 704, 844
PspPI GGNCC 3 cut(s) 92, 182, 540
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 458, 979
RsaNI GTAC 2 cut(s) 457, 978
RseI CAYNNNNRTG 3 cut(s) 44, 74, 192
Rsr2I CGGWCCG 1 cut(s) 182
RsrII CGGWCCG 1 cut(s) 182
SacI GAGCTC 2 cut(s) 426, 883
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 726, 863
SatI GCNGC 5 cut(s) 67, 321, 344, 530, 762
Sau3AI GATC 3 cut(s) 117, 364, 754
Sau96I GGNCC 3 cut(s) 92, 182, 540
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 700, 815, 840
SduI GDGCHC 3 cut(s) 426, 502, 883
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 3 cut(s) 44, 74, 192
SmlI CTYRAG 2 cut(s) 54, 425
SmoI CTYRAG 2 cut(s) 54, 425
Sse9I AATT 7 cut(s) 198, 245, 257, 435, 652, 859, 908
SsiI CCGC 4 cut(s) 185, 275, 343, 938
SspI AATATT 2 cut(s) 738, 874
SspMI CTAG 3 cut(s) 623, 719, 791
SstI GAGCTC 2 cut(s) 426, 883
StyD4I CCNGG 3 cut(s) 698, 813, 838
TaaI ACNGT 2 cut(s) 182, 415
TaqI TCGA 4 cut(s) 162, 295, 660, 685
TaqII GACCGA 1 cut(s) 972
TasI AATT 7 cut(s) 198, 245, 257, 435, 652, 859, 908
TatI WGTACW 2 cut(s) 456, 977
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 5 cut(s) 292, 356, 633, 923, 941
Tru1I TTAA 2 cut(s) 726, 863
Tru9I TTAA 2 cut(s) 726, 863
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 3 cut(s) 30, 151, 409
TseI GCWGC 4 cut(s) 66, 320, 529, 761
Tsp45I GTSAC 3 cut(s) 30, 151, 409
TspDTI ATGAA 7 cut(s) 35, 210, 500, 646, 797, 1001, 1002
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 182, 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 4 cut(s) 198, 257, 652, 859
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 623, 719, 791
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.