Rmu_sc0000944.1_g000011

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000944.1
OG0000435
Physical Location & Seq
Reverse (-)
37406 .. 41129
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000944.1_g000011.1.cds

Sequence Viewer

Length: 1080 bp
ctggaagtatcaatatatagttctgcgaaaaaggaggatgtggatattgattgcttggactatgaagtcttatgggaagacatgataattggagagaggattgggcaaggttcatgtggaactgtataccatggtctgtgggatggatcagtatgttatcttgctctttctctacttcaaatgtggatgtgcacaagcaacaagcaatctctgattgcacaaccacttcccagacaaggatcatcggttgatgccaatcttcattactttactacacttgaacttgctaaattgactggagattttttctgctacgctggtgcattagagaggaccatttgtgcattactggtaatggtttcgcagactttcatggctctatggaccatttatgggatagaagaacaaatcttgtttacacagaaaaggatattgatgaagttcgggctgaatggacgaagcatggtgggggagctcaagaagctagttgaagagggtaaaataaagtatattggtttgtctgaggcatcagcttcagcaataagaagagcccattgtgttcatcccataactgctgtgcagctggagtggtccttgtggtcaagagatgtagaggaagaaataatccctacttgtcgggaacttggcattggcattgttgcatatagtcctctgggaagaggattcttttcatctggggcaaaattcatcgaaaatcttcccaatgatgattttcgaaagaatatgcccaggttccaagctgaaaacctagcgcataataaaacaatatttgagcgagtaagtgatcttgcagcaaggaagggttgcaccccatctcaactagcactggcctgggttcatcaccaaggaaatgatgtgtgccctatacccggaaccaccaagattgagaattttaagcagaacattaaggctctgtctgtgaaactgacaccagaagaaatggctgagcttgaatcttttgcttccgcagatgctgttaagggcgacaggtatcagactggcataagtacttggaggaactctgaaactccaccactgtcttcatggaaagccacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

359

Amino Acids

40.12

Weight (kDa)

5.75

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 987
AclWI GGATC 2 cut(s) 154, 247
AcsI RAATTY 2 cut(s) 704, 910
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 1 cut(s) 1030
AfiI CCNNNNNNNGG 3 cut(s) 236, 393, 890
AgsI TTSAA 4 cut(s) 179, 281, 491, 974
AjnI CCWGG 2 cut(s) 749, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 6 cut(s) 475, 484, 533, 583, 761, 970
AluI AGCT 6 cut(s) 475, 484, 533, 583, 761, 970
Alw21I GWGCWC 2 cut(s) 194, 477
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 2 cut(s) 154, 247
AlwNI CAGNNNCTG 1 cut(s) 995
AoxI GGCC 1 cut(s) 849
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 580, 812
ApoI RAATTY 2 cut(s) 704, 910
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 1 cut(s) 775
AspS9I GGNCC 3 cut(s) 333, 384, 591
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 1 cut(s) 854
AsuII TTCGAA 1 cut(s) 736
AvaII GGWCC 3 cut(s) 333, 384, 591
BaeGI GKGCMC 2 cut(s) 194, 884
BanII GRGCYC 2 cut(s) 477, 553
BbsI GAAGAC 2 cut(s) 84, 1053
Bbv12I GWGCWC 2 cut(s) 194, 477
BbvI GCAGC 2 cut(s) 592, 824
BccI CCATC 2 cut(s) 137, 841
BciT130I CCWGG 2 cut(s) 751, 853
BcnI CCSGG 1 cut(s) 891
BfaI CTAG 3 cut(s) 485, 770, 842
BisI GCNGC 2 cut(s) 581, 813
BlpI GCTNAGC 1 cut(s) 966
BlsI GCNGC 2 cut(s) 582, 814
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 3 cut(s) 751, 853, 891
Bme18I GGWCC 3 cut(s) 333, 384, 591
BmgT120I GGNCC 3 cut(s) 333, 384, 591
BmiI GGNNCC 2 cut(s) 755, 895
BmrFI CCNGG 3 cut(s) 751, 853, 891
BmsI GCATC 3 cut(s) 241, 536, 982
BpiI GAAGAC 2 cut(s) 84, 1053
BpmI CTGGAG 2 cut(s) 318, 605
Bpu1102I GCTNAGC 1 cut(s) 966
Bpu14I TTCGAA 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 4 cut(s) 130, 749, 852, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 393, 890
Bse1I ACTGG 4 cut(s) 301, 354, 852, 1024
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 751, 853
BseDI CCNNGG 4 cut(s) 130, 749, 852, 865
BseGI GGATG 4 cut(s) 43, 148, 192, 562
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 236, 393, 890
BseMII CTCAG 2 cut(s) 513, 957
BseNI ACTGG 4 cut(s) 301, 354, 852, 1024
BseSI GKGCMC 2 cut(s) 194, 884
BseXI GCAGC 2 cut(s) 592, 824
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 1 cut(s) 851
BsiHKAI GWGCWC 2 cut(s) 194, 477
BsiSI CCGG 1 cut(s) 891
BslI CCNNNNNNNGG 3 cut(s) 236, 393, 890
BsnI GGCC 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 4 cut(s) 194, 477, 553, 884
Bsp143I GATC 3 cut(s) 146, 239, 805
Bsp1720I GCTNAGC 1 cut(s) 966
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 987
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 2 cut(s) 514, 958
BspLI GGNNCC 2 cut(s) 755, 895
BspPI GGATC 2 cut(s) 154, 247
BspQI GCTCTTC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 736
BsrI ACTGG 4 cut(s) 301, 354, 852, 1024
BssECI CCNNGG 4 cut(s) 130, 749, 852, 865
BssMI GATC 3 cut(s) 146, 239, 805
BssNAI GTATAC 1 cut(s) 127
BssT1I CCWWGG 2 cut(s) 130, 865
Bst1107I GTATAC 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 751, 853
Bst4CI ACNGT 2 cut(s) 124, 1059
Bst6I CTCTTC 3 cut(s) 486, 541, 673
BstBI TTCGAA 1 cut(s) 736
BstDEI CTNAG 2 cut(s) 522, 966
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 4 cut(s) 43, 148, 192, 562
BstHHI GCGC 1 cut(s) 775
BstKTI GATC 3 cut(s) 149, 242, 808
BstMBI GATC 3 cut(s) 146, 239, 805
BstMWI GCNNNNNNNGC 1 cut(s) 481
BstNI CCWGG 2 cut(s) 751, 853
BstSCI CCNGG 3 cut(s) 749, 851, 889
BstSLI GKGCMC 2 cut(s) 194, 884
BstV1I GCAGC 2 cut(s) 592, 824
BstV2I GAAGAC 2 cut(s) 84, 1053
BstZ17I GTATAC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 4 cut(s) 43, 148, 192, 562
BtsIMutI CAGTG 2 cut(s) 845, 1055
CaiI CAGNNNCTG 1 cut(s) 995
CfoI GCGC 1 cut(s) 775
Cfr13I GGNCC 3 cut(s) 333, 384, 591
Csp6I GTAC 1 cut(s) 1029
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 6 cut(s) 82, 114, 131, 373, 463, 1065
CviQI GTAC 1 cut(s) 1029
DdeI CTNAG 2 cut(s) 522, 966
DpnI GATC 3 cut(s) 148, 241, 807
DpnII GATC 3 cut(s) 146, 239, 805
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 486, 541, 673
EarI CTCTTC 3 cut(s) 486, 541, 673
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 130, 865
Eco24I GRGCYC 2 cut(s) 477, 553
Eco47I GGWCC 3 cut(s) 333, 384, 591
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 749, 851
EcoT14I CCWWGG 2 cut(s) 130, 865
EcoT38I GRGCYC 2 cut(s) 477, 553
ErhI CCWWGG 2 cut(s) 130, 865
FaeI CATG 6 cut(s) 85, 117, 134, 376, 466, 1068
FatI CATG 6 cut(s) 81, 113, 130, 372, 462, 1064
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 581, 813
FokI GGATG 4 cut(s) 50, 155, 199, 549
FriOI GRGCYC 2 cut(s) 477, 553
Fsp4HI GCNGC 2 cut(s) 581, 813
FspBI CTAG 3 cut(s) 485, 770, 842
GlaI GCGC 1 cut(s) 774
GluI GCNGC 2 cut(s) 581, 813
GsuI CTGGAG 2 cut(s) 318, 605
HaeIII GGCC 1 cut(s) 851
HapII CCGG 1 cut(s) 891
HhaI GCGC 1 cut(s) 775
Hin1II CATG 6 cut(s) 85, 117, 134, 376, 466, 1068
Hin6I GCGC 1 cut(s) 773
HinP1I GCGC 1 cut(s) 773
HinfI GANTC 2 cut(s) 684, 974
HpaII CCGG 1 cut(s) 891
HphI GGTGA 1 cut(s) 854
Hpy166II GTNNAC 3 cut(s) 127, 192, 417
Hpy188I TCNGA 4 cut(s) 213, 523, 1017, 1045
Hpy188III TCNNGA 3 cut(s) 478, 603, 638
Hpy8I GTNNAC 3 cut(s) 127, 192, 417
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 2 cut(s) 124, 1059
HpyCH4V TGCA 8 cut(s) 192, 218, 323, 344, 580, 662, 812, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 481
HpyF3I CTNAG 2 cut(s) 522, 966
Hsp92II CATG 6 cut(s) 85, 117, 134, 376, 466, 1068
HspAI GCGC 1 cut(s) 773
Kzo9I GATC 3 cut(s) 146, 239, 805
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 592, 824
LweI GCATC 3 cut(s) 241, 536, 982
MaeI CTAG 3 cut(s) 485, 770, 842
MalI GATC 3 cut(s) 148, 241, 807
MboI GATC 3 cut(s) 146, 239, 805
MhlI GDGCHC 4 cut(s) 194, 477, 553, 884
MluCI AATT 4 cut(s) 87, 290, 704, 910
MnlI CCTC 9 cut(s) 28, 90, 324, 487, 517, 607, 674, 681, 1029
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 3 cut(s) 915, 927, 999
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 1 cut(s) 891
MspR9I CCNGG 3 cut(s) 751, 853, 891
MvaI CCWGG 2 cut(s) 751, 853
MwoI GCNNNNNNNGC 1 cut(s) 481
NciI CCSGG 1 cut(s) 891
NcoI CCATGG 1 cut(s) 130
NdeII GATC 3 cut(s) 146, 239, 805
NlaIII CATG 6 cut(s) 85, 117, 134, 376, 466, 1068
NlaIV GGNNCC 2 cut(s) 755, 895
NspV TTCGAA 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 684, 974
PkrI GCNGC 2 cut(s) 582, 814
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 749, 851
PspGI CCWGG 2 cut(s) 749, 851
PspN4I GGNNCC 2 cut(s) 755, 895
PspPI GGNCC 3 cut(s) 333, 384, 591
PstNI CAGNNNCTG 1 cut(s) 995
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 1030
RsaNI GTAC 1 cut(s) 1029
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 3 cut(s) 915, 927, 999
SatI GCNGC 2 cut(s) 581, 813
Sau3AI GATC 3 cut(s) 146, 239, 805
Sau96I GGNCC 3 cut(s) 333, 384, 591
ScaI AGTACT 1 cut(s) 1030
ScrFI CCNGG 3 cut(s) 751, 853, 891
SduI GDGCHC 4 cut(s) 194, 477, 553, 884
SfaNI GCATC 3 cut(s) 241, 536, 982
SfuI TTCGAA 1 cut(s) 736
SinI GGWCC 3 cut(s) 333, 384, 591
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 4 cut(s) 87, 290, 704, 910
SsiI CCGC 1 cut(s) 987
SspI AATATT 1 cut(s) 789
SspMI CTAG 3 cut(s) 485, 770, 842
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 3 cut(s) 749, 851, 889
StyI CCWWGG 2 cut(s) 130, 865
TaaI ACNGT 2 cut(s) 124, 1059
TaqI TCGA 2 cut(s) 711, 736
TasI AATT 4 cut(s) 87, 290, 704, 910
TatI WGTACW 1 cut(s) 1028
TfiI GAWTC 2 cut(s) 684, 974
Tru1I TTAA 3 cut(s) 915, 927, 999
Tru9I TTAA 3 cut(s) 915, 927, 999
TscAI CASTG 2 cut(s) 852, 1062
TseI GCWGC 2 cut(s) 580, 812
TspRI CASTG 2 cut(s) 852, 1062
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 3 cut(s) 333, 384, 591
XapI RAATTY 2 cut(s) 704, 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 1062
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 3 cut(s) 485, 770, 842
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.