Rorug04G0110600

reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
17372039 .. 17373564
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0110600.1

Sequence Viewer

Length: 1311 bp
ATGTTAGTTGCAGCATGCAGGAAACGTAATCAGAAAGGTAGCAGCTCTGATGATCCAATCTACACTCAGACCAAATTTCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAACTTCGGATTGCAACTGATAACTTCACCAACTTGTTGGGAGAAGATGATCCAATCTACACTCAGACCAAATTTCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAACTTCGGATTGCAACTGATAACTTCACCTACTTGTTGGGAAAAGGAGGGTTTGGTTCAGTTTATAAAGGAATATTTAGTAATGGAACGCTTGTGGCAGTGAAGGTTCTAAAGGATACCTCGGACAAGACAATTGATGAGCAATTCAGGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTTCGTGGTTTCTGCTTTGAGAGAGAGCTTAGAGCACTGGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCGACGGAAACAGGATTGTAGGATTTGAAAAGCTTCATGACATTGCGGTTGGGACGGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAACGAATAGTCCACTATGATATAAAACCTGAAAATATTCTTTTGGATGTGAATTTCCTCCCCAAAGTTGCTGACTTCGGTTTGGCCAAGCTGATCAACAGGGACAATACTCATATAACAATGACAGGTGGGAGGGGAACTCCGGGTTATGCTGCACCAGAACTTTGGCTACGGTTTGCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGCTGTTATTTGAGATCATAGGTAGAAGAAGGAACCATGACCTTAATCTTCCAGAGAGCCAAGACTGGTTTCTAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGAGAACTAATGGCAGTGTGTGGTATAGAGGAAAAAGATAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTATAGGTCCGAGTTGAGGCCCTTAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACAATCCTATCATGGCAGCATATAGCACTAGTGCCTCCGACACGGATTCCTCTCAAACAATAACTGGATATAACATTGTTCGTGAGACTCCCATCATGAAAAAATACGAGATTGAAATAGCGTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

50.01

Weight (kDa)

6.19

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 109 - 373 6.5e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 109 - 301 1.1e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccI GTMKAC 1 cut(s) 1304
AciI CCGC 2 cut(s) 443, 617
AclWI GGATC 2 cut(s) 47, 191
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 4 cut(s) 74, 218, 715, 1130
AfaI GTAC 2 cut(s) 454, 866
AfiI CCNNNNNNNGG 1 cut(s) 1089
AgsI TTSAA 4 cut(s) 599, 974, 1152, 1295
AhlI ACTAGT 1 cut(s) 1208
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AleI CACNNNNGTG 1 cut(s) 855
AluBI AGCT 7 cut(s) 45, 517, 604, 754, 870, 977, 1058
AluI AGCT 7 cut(s) 45, 517, 604, 754, 870, 977, 1058
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 1259
AlwI GGATC 2 cut(s) 47, 191
AoxI GGCC 2 cut(s) 747, 1091
ApeKI GCWGC 5 cut(s) 11, 42, 815, 1034, 1196
ApoI RAATTY 4 cut(s) 74, 218, 715, 1130
AseI ATTAAT 1 cut(s) 1155
Asp700I GAANNNNTTC 2 cut(s) 603, 699
AspS9I GGNCC 2 cut(s) 1080, 1092
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 4 cut(s) 166, 310, 992, 1123
AvaII GGWCC 1 cut(s) 1080
BalI TGGCCA 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 5 cut(s) 23, 54, 802, 1046, 1208
BccI CCATC 4 cut(s) 137, 281, 954, 1280
BceAI ACGGC 1 cut(s) 642
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 1259
BcuI ACTAGT 1 cut(s) 1208
BfaI CTAG 4 cut(s) 630, 986, 1143, 1209
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 5 cut(s) 12, 43, 816, 1035, 1197
BlsI GCNGC 5 cut(s) 13, 44, 817, 1036, 1198
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 1 cut(s) 1080
BmgT120I GGNCC 2 cut(s) 1080, 1092
BmiI GGNNCC 1 cut(s) 911
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 1 cut(s) 1164
BpiI GAAGAC 1 cut(s) 482
BplI GAGNNNNNCTC 2 cut(s) 787, 819
BpuMI CCSGG 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 1089
Bse1I ACTGG 3 cut(s) 531, 947, 1249
Bse3DI GCAATG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 715, 965
BseLI CCNNNNNNNGG 1 cut(s) 1089
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 80, 224
BseNI ACTGG 3 cut(s) 531, 947, 1249
BseXI GCAGC 5 cut(s) 23, 54, 802, 1046, 1208
BsgI GTGCAG 1 cut(s) 801
BshFI GGCC 2 cut(s) 749, 1093
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 806
BslFI GGGAC 2 cut(s) 637, 779
BslI CCNNNNNNNGG 1 cut(s) 1089
BsmAI GTCTC 1 cut(s) 1259
BsmFI GGGAC 2 cut(s) 637, 779
BsmI GAATGC 2 cut(s) 662, 882
BsnI GGCC 2 cut(s) 749, 1093
Bsp1286I GDGCHC 1 cut(s) 526
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 4 cut(s) 52, 196, 756, 891
BspACI CCGC 2 cut(s) 443, 617
BspANI GGCC 2 cut(s) 749, 1093
BspCNI CTCAG 2 cut(s) 79, 223
BspHI TCATGA 2 cut(s) 607, 1275
BspLI GGNNCC 1 cut(s) 911
BspPI GGATC 2 cut(s) 47, 191
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 3 cut(s) 531, 947, 1249
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 4 cut(s) 52, 196, 756, 891
Bst4CI ACNGT 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 1174
BstAUI TGTACA 1 cut(s) 864
BstC8I GCNNGC 2 cut(s) 16, 662
BstDEI CTNAG 4 cut(s) 66, 210, 518, 950
BstF5I GGATG 2 cut(s) 715, 965
BstKTI GATC 4 cut(s) 55, 199, 759, 894
BstMAI GTCTC 1 cut(s) 1259
BstMBI GATC 4 cut(s) 52, 196, 756, 891
BstMWI GCNNNNNNNGC 1 cut(s) 1174
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 805
BstV1I GCAGC 5 cut(s) 23, 54, 802, 1046, 1208
BstV2I GAAGAC 1 cut(s) 482
BstXI CCANNNNNNTGG 2 cut(s) 184, 828
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 749, 1093
BtsCI GGATG 2 cut(s) 715, 965
BtsI GCAGTG 2 cut(s) 396, 1008
BtsIMutI CAGTG 3 cut(s) 396, 524, 1008
Cac8I GCNNGC 2 cut(s) 16, 662
CciI TCATGA 2 cut(s) 607, 1275
Cfr13I GGNCC 2 cut(s) 1080, 1092
CseI GACGC 1 cut(s) 1290
Csp6I GTAC 2 cut(s) 453, 865
CviAII CATG 6 cut(s) 15, 473, 608, 914, 1192, 1276
CviQI GTAC 2 cut(s) 453, 865
DdeI CTNAG 4 cut(s) 66, 210, 518, 950
DpnI GATC 4 cut(s) 54, 198, 758, 893
DpnII GATC 4 cut(s) 52, 196, 756, 891
EaeI YGGCCR 1 cut(s) 747
EciI GGCGGA 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 1080
EcoO109I RGGNCCY 1 cut(s) 1092
FaeI CATG 6 cut(s) 18, 476, 611, 917, 1195, 1279
FaqI GGGAC 2 cut(s) 637, 779
FatI CATG 6 cut(s) 14, 472, 607, 913, 1191, 1275
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 1304
Fnu4HI GCNGC 5 cut(s) 12, 43, 816, 1035, 1197
FokI GGATG 2 cut(s) 722, 972
Fsp4HI GCNGC 5 cut(s) 12, 43, 816, 1035, 1197
FspBI CTAG 4 cut(s) 630, 986, 1143, 1209
GluI GCNGC 5 cut(s) 12, 43, 816, 1035, 1197
HaeIII GGCC 2 cut(s) 749, 1093
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 1290
Hin1II CATG 6 cut(s) 18, 476, 611, 917, 1195, 1279
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 4 cut(s) 466, 1138, 1226, 1267
HpaII CCGG 1 cut(s) 806
HphI GGTGA 4 cut(s) 166, 310, 992, 1123
Hpy166II GTNNAC 8 cut(s) 138, 282, 455, 478, 676, 865, 983, 1305
Hpy188III TCNNGA 4 cut(s) 608, 929, 1262, 1276
Hpy8I GTNNAC 8 cut(s) 138, 282, 455, 478, 676, 865, 983, 1305
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 4 cut(s) 388, 900, 1118, 1158
HpyCH4III ACNGT 1 cut(s) 837
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 11, 18, 161, 305, 649, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 1174
HpyF3I CTNAG 4 cut(s) 66, 210, 518, 950
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 6 cut(s) 18, 476, 611, 917, 1195, 1279
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 4 cut(s) 52, 196, 756, 891
Lsp1109I GCAGC 5 cut(s) 23, 54, 802, 1046, 1208
LweI GCATC 1 cut(s) 1164
MaeI CTAG 4 cut(s) 630, 986, 1143, 1209
MaeII ACGT 1 cut(s) 25
MalI GATC 4 cut(s) 54, 198, 758, 893
MboI GATC 4 cut(s) 52, 196, 756, 891
MboII GAAGA 6 cut(s) 203, 482, 665, 915, 917, 976
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 526
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 9 cut(s) 74, 97, 218, 241, 423, 434, 715, 1130, 1152
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 1 cut(s) 1261
MmeI TCCRAC 4 cut(s) 104, 248, 1101, 1242
Mox20I TGGCCA 1 cut(s) 749
MroXI GAANNNNTTC 2 cut(s) 603, 699
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 921, 1049, 1097, 1155, 1309
MslI CAYNNNNRTG 1 cut(s) 855
Msp20I TGGCCA 1 cut(s) 749
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 807
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 2 cut(s) 662, 882
MwoI GCNNNNNNNGC 1 cut(s) 1174
NciI CCSGG 1 cut(s) 807
NdeII GATC 4 cut(s) 52, 196, 756, 891
NlaIII CATG 6 cut(s) 18, 476, 611, 917, 1195, 1279
NlaIV GGNNCC 1 cut(s) 911
NspI RCATGY 1 cut(s) 18
OliI CACNNNNGTG 1 cut(s) 855
PaeI GCATGC 1 cut(s) 18
PagI TCATGA 2 cut(s) 607, 1275
PctI GAATGC 2 cut(s) 662, 882
PdmI GAANNNNTTC 2 cut(s) 603, 699
PfeI GAWTC 3 cut(s) 466, 1138, 1226
PkrI GCNGC 5 cut(s) 13, 44, 817, 1036, 1198
PleI GAGTC 1 cut(s) 1261
PpsI GAGTC 1 cut(s) 1261
PshBI ATTAAT 1 cut(s) 1155
PsiI TTATAA 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 911
PspPI GGNCC 2 cut(s) 1080, 1092
PsrI GAACNNNNNNTAC 2 cut(s) 816, 848
RsaI GTAC 2 cut(s) 454, 866
RsaNI GTAC 2 cut(s) 453, 865
RseI CAYNNNNRTG 1 cut(s) 855
SaqAI TTAA 5 cut(s) 921, 1049, 1097, 1155, 1309
SatI GCNGC 5 cut(s) 12, 43, 816, 1035, 1197
Sau3AI GATC 4 cut(s) 52, 196, 756, 891
Sau96I GGNCC 2 cut(s) 1080, 1092
SchI GAGTC 1 cut(s) 1261
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 1 cut(s) 1164
SinI GGWCC 1 cut(s) 1080
SmiMI CAYNNNNRTG 1 cut(s) 855
SpeI ACTAGT 1 cut(s) 1208
SphI GCATGC 1 cut(s) 18
Sse9I AATT 9 cut(s) 74, 97, 218, 241, 423, 434, 715, 1130, 1152
SsiI CCGC 2 cut(s) 443, 617
SspI AATATT 2 cut(s) 366, 700
SspMI CTAG 4 cut(s) 630, 986, 1143, 1209
StyD4I CCNGG 1 cut(s) 805
TaaI ACNGT 1 cut(s) 837
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 573
TasI AATT 9 cut(s) 74, 97, 218, 241, 423, 434, 715, 1130, 1152
TatI WGTACW 2 cut(s) 452, 864
TfiI GAWTC 3 cut(s) 466, 1138, 1226
Tru1I TTAA 5 cut(s) 921, 1049, 1097, 1155, 1309
Tru9I TTAA 5 cut(s) 921, 1049, 1097, 1155, 1309
TscAI CASTG 3 cut(s) 396, 531, 1008
TseI GCWGC 5 cut(s) 11, 42, 815, 1034, 1196
TspDTI ATGAA 3 cut(s) 458, 596, 1292
TspGWI ACGGA 2 cut(s) 591, 1238
TspRI CASTG 3 cut(s) 396, 531, 1008
VpaK11BI GGWCC 1 cut(s) 1080
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 4 cut(s) 74, 218, 715, 1130
XceI RCATGY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 1304
XmnI GAANNNNTTC 2 cut(s) 603, 699
XspI CTAG 4 cut(s) 630, 986, 1143, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.