Rroxscaffold_5G00355580

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000435
Physical Location & Seq
Forward (+)
34333666 .. 34336213
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355580.1

Sequence Viewer

Length: 738 bp
ATGGGCAAAACCCTTGCTGCAACTCTTTTGAAGATTAGCTTAGTTGTCACTGAATATAGCATCTCGTTGGACCGCATGACCGAAGTTTCAGCAACTAAAGGAACCCCTCACTGTAATTCTCAAGTGGGGGAGCTCAAGAAACTCGTTGAAGAAGGTAAGATAAAGTACATTGGTCTGTCTGAGGCTTCTGCTTCCACAATAAGGAGAGCCCATGCTGTTCATCCAATAACAGCTGTACAACTGGAGTGGTCCTTGTGGTCAAGAGATGTGGAGGAAGAAATTATTCCTACTTGTCGTGAACTTGGCATCGGTATTGTTGCATACAGTCCTCTAGGAAGAGGATTCCTGTCATCTGGGGCTAAGCTATTTGAAAATCTTGCCAACAATGATTTCCGAAAGTATCTACCCAGGTTCCAAGCTGAAAACCTAGAGCATAATCAAACAATATTTGAGCGGGTTAGTGATCTTGCAGCAAGAAAGGGGTGCACCCCATCTCAACTAGCACTGGCTTGGGTTCATCACCAAGGAAATGATGTGTGCCCCATACCCGGAACCACCAAGATTGAGAATTTTAATCAGAATGTTGGAGCTTTGTCTGTGAAACTGACACCAGAGGAATTGGCTGAGCTTGAATCCTTTGCTTCTGCGGATGCTGTTAAGGGTGACCGATATCAGAATGGCTTCAGTACTTGGAAGAACTCCGAAACTCCACCTCTGTCTTCATGGATGGCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

245

Amino Acids

26.96

Weight (kDa)

6.1

Isoelectric Point (pI)

22.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 40 - 213 4.2e-40 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 454
AciI CCGC 3 cut(s) 73, 454, 647
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 667
AfaI GTAC 3 cut(s) 167, 237, 688
AfiI CCNNNNNNNGG 2 cut(s) 201, 548
AgsI TTSAA 4 cut(s) 31, 149, 371, 632
AjnI CCWGG 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 7 cut(s) 39, 133, 233, 364, 419, 590, 628
AluI AGCT 7 cut(s) 39, 133, 233, 364, 419, 590, 628
Alw21I GWGCWC 2 cut(s) 135, 488
Alw44I GTGCAC 1 cut(s) 484
AoxI GGCC 1 cut(s) 729
ApaLI GTGCAC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 17, 470
ApoI RAATTY 1 cut(s) 568
Asp700I GAANNNNTTC 2 cut(s) 282, 680
AspS9I GGNCC 2 cut(s) 70, 249
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 2 cut(s) 512, 674
AvaII GGWCC 2 cut(s) 70, 249
BaeGI GKGCMC 2 cut(s) 488, 542
BalI TGGCCA 1 cut(s) 731
BanII GRGCYC 2 cut(s) 135, 211
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 135, 488
BbvI GCAGC 2 cut(s) 4, 482
BccI CCATC 2 cut(s) 499, 721
BciT130I CCWGG 1 cut(s) 409
BcnI CCSGG 1 cut(s) 549
BfaI CTAG 3 cut(s) 332, 428, 500
BisI GCNGC 2 cut(s) 18, 471
BlpI GCTNAGC 2 cut(s) 360, 624
BlsI GCNGC 2 cut(s) 19, 472
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 2 cut(s) 409, 549
Bme18I GGWCC 2 cut(s) 70, 249
BmgT120I GGNCC 2 cut(s) 70, 249
BmiI GGNNCC 3 cut(s) 103, 413, 553
BmrFI CCNGG 2 cut(s) 409, 549
BmsI GCATC 3 cut(s) 69, 315, 640
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 2 cut(s) 360, 624
BpuEI CTTGAG 2 cut(s) 105, 119
BpuMI CCSGG 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 407, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 548
Bse1I ACTGG 2 cut(s) 246, 510
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 2 cut(s) 407, 523
BseGI GGATG 3 cut(s) 220, 655, 732
BseLI CCNNNNNNNGG 2 cut(s) 201, 548
BseMII CTCAG 2 cut(s) 171, 615
BseNI ACTGG 2 cut(s) 246, 510
BseSI GKGCMC 2 cut(s) 488, 542
BseXI GCAGC 2 cut(s) 4, 482
BshFI GGCC 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 135, 488
BsiSI CCGG 1 cut(s) 549
BslI CCNNNNNNNGG 2 cut(s) 201, 548
BsnI GGCC 1 cut(s) 731
Bsp1286I GDGCHC 4 cut(s) 135, 211, 488, 542
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 463
Bsp1720I GCTNAGC 2 cut(s) 360, 624
BspACI CCGC 3 cut(s) 73, 454, 647
BspANI GGCC 1 cut(s) 731
BspCNI CTCAG 2 cut(s) 172, 616
BspLI GGNNCC 3 cut(s) 103, 413, 553
BsrBI CCGCTC 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 235
BsrI ACTGG 2 cut(s) 246, 510
BssECI CCNNGG 2 cut(s) 407, 523
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 113, 326
Bst6I CTCTTC 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 40, 180, 360, 624
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 3 cut(s) 220, 655, 732
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstNI CCWGG 1 cut(s) 409
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 2 cut(s) 407, 547
BstSLI GKGCMC 2 cut(s) 488, 542
BstV1I GCAGC 2 cut(s) 4, 482
BstV2I GAAGAC 1 cut(s) 711
BsuRI GGCC 1 cut(s) 731
BtsCI GGATG 3 cut(s) 220, 655, 732
BtsIMutI CAGTG 3 cut(s) 48, 109, 503
Cfr13I GGNCC 2 cut(s) 70, 249
Csp6I GTAC 3 cut(s) 166, 236, 687
CspCI CAANNNNNGTGG 6 cut(s) 227, 249, 262, 284, 544, 579
CviAII CATG 3 cut(s) 76, 212, 723
CviQI GTAC 3 cut(s) 166, 236, 687
DdeI CTNAG 4 cut(s) 40, 180, 360, 624
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 2 cut(s) 135, 211
Eco32I GATATC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 70, 249
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 667
Eco91I GGTNACC 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 407
EcoRV GATATC 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 523
EcoT38I GRGCYC 2 cut(s) 135, 211
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 3 cut(s) 79, 215, 726
FaiI YATR 7 cut(s) 57, 77, 213, 322, 435, 545, 724
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 3 cut(s) 75, 211, 722
FauI CCCGC 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 18, 471
FokI GGATG 2 cut(s) 207, 662
FriOI GRGCYC 2 cut(s) 135, 211
Fsp4HI GCNGC 2 cut(s) 18, 471
FspBI CTAG 3 cut(s) 332, 428, 500
GluI GCNGC 2 cut(s) 18, 471
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 731
HapII CCGG 1 cut(s) 549
Hin1II CATG 3 cut(s) 79, 215, 726
HinfI GANTC 2 cut(s) 342, 632
HpaII CCGG 1 cut(s) 549
HphI GGTGA 2 cut(s) 512, 674
Hpy166II GTNNAC 2 cut(s) 299, 486
Hpy188I TCNGA 5 cut(s) 181, 395, 579, 675, 703
Hpy188III TCNNGA 3 cut(s) 136, 261, 296
Hpy8I GTNNAC 2 cut(s) 299, 486
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 113, 326
HpyCH4V TGCA 4 cut(s) 20, 320, 470, 486
HpyF3I CTNAG 4 cut(s) 40, 180, 360, 624
Hsp92II CATG 3 cut(s) 79, 215, 726
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 130, 587
LpnPI CCDG 8 cut(s) 227, 339, 359, 394, 421, 491, 562, 624
Lsp1109I GCAGC 2 cut(s) 4, 482
LweI GCATC 3 cut(s) 69, 315, 640
MaeI CTAG 3 cut(s) 332, 428, 500
MaeIII GTNAC 2 cut(s) 46, 662
MalI GATC 1 cut(s) 465
MbiI CCGCTC 1 cut(s) 454
MboI GATC 1 cut(s) 463
MboII GAAGA 6 cut(s) 43, 161, 287, 348, 706, 711
MhlI GDGCHC 4 cut(s) 135, 211, 488, 542
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 4 cut(s) 115, 279, 568, 617
MluNI TGGCCA 1 cut(s) 731
MmeI TCCRAC 2 cut(s) 48, 565
MnlI CCTC 7 cut(s) 117, 175, 265, 332, 339, 607, 723
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 282, 680
MscI TGGCCA 1 cut(s) 731
MseI TTAA 2 cut(s) 573, 657
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 2 cut(s) 409, 549
MvaI CCWGG 1 cut(s) 409
NciI CCSGG 1 cut(s) 549
NdeII GATC 1 cut(s) 463
NlaIII CATG 3 cut(s) 79, 215, 726
NlaIV GGNNCC 3 cut(s) 103, 413, 553
NmuCI GTSAC 2 cut(s) 46, 662
PdmI GAANNNNTTC 2 cut(s) 282, 680
PfeI GAWTC 2 cut(s) 342, 632
PkrI GCNGC 2 cut(s) 19, 472
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 407
PspEI GGTNACC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 103, 413, 553
PspPI GGNCC 2 cut(s) 70, 249
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 3 cut(s) 167, 237, 688
RsaNI GTAC 3 cut(s) 166, 236, 687
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 573, 657
SatI GCNGC 2 cut(s) 18, 471
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 2 cut(s) 70, 249
ScaI AGTACT 1 cut(s) 688
ScrFI CCNGG 2 cut(s) 409, 549
SduI GDGCHC 4 cut(s) 135, 211, 488, 542
SfaNI GCATC 3 cut(s) 69, 315, 640
SinI GGWCC 2 cut(s) 70, 249
SmlI CTYRAG 2 cut(s) 120, 134
SmoI CTYRAG 2 cut(s) 120, 134
Sse9I AATT 4 cut(s) 115, 279, 568, 617
SsiI CCGC 3 cut(s) 73, 454, 647
SspI AATATT 1 cut(s) 447
SspMI CTAG 3 cut(s) 332, 428, 500
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 407, 547
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 113, 326
TaqII GACCGA 2 cut(s) 95, 681
TasI AATT 4 cut(s) 115, 279, 568, 617
TatI WGTACW 3 cut(s) 165, 235, 686
TfiI GAWTC 2 cut(s) 342, 632
Tru1I TTAA 2 cut(s) 573, 657
Tru9I TTAA 2 cut(s) 573, 657
TscAI CASTG 3 cut(s) 55, 116, 510
TseFI GTSAC 2 cut(s) 46, 662
TseI GCWGC 2 cut(s) 17, 470
Tsp45I GTSAC 2 cut(s) 46, 662
TspDTI ATGAA 3 cut(s) 209, 506, 711
TspRI CASTG 3 cut(s) 55, 116, 510
VneI GTGCAC 1 cut(s) 484
VpaK11BI GGWCC 2 cut(s) 70, 249
XapI RAATTY 1 cut(s) 568
XmnI GAANNNNTTC 2 cut(s) 282, 680
XspI CTAG 3 cut(s) 332, 428, 500
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.